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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0273400 |
| Transcript ID | LotjaGi4g1v0273400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone acetyltransferase; TAIR: AT3G24150.1 hypothetical protein; Swiss-Prot: sp|Q12TC8|DNAA_SHEDO Chromosomal replication initiator protein DnaA; TrEMBL-Plants: tr|I1LZP3|I1LZP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64246408..64249919) extracted from Lotus japonicus Gifu genome v1.2.
CCACACCCTACACTACTACACAAAGAAAAATAAAAGAAAAAAGATTGAACAACAACAACAACAACAAAAGAAAAGAACCA TGGTAATGTAATGTAATGTAATGGTAAACCAAACCAAACCAAACCAAAACAAACCCCTCCCTCTAAATTATTGGGGGGAA GACAATAGACAATAGAAAATAGAGAGAGAAGAGAGGTACCCCATTCTTTCTTTGTTTCTCCCCAAACAAAACCATGAGAA ATGGCAACAACAAAGACAAGTGAGTGAGGAAAGGCCAAGTAAGCTAATTGACCCATCAAACAAACAAAACCCATGTAGAG AGAGCAGTGTCACACTGTGTTTGTTTGTTTGTTTGTTGTGTATATAGCAATTGCTATTGCAAACTCTTCCTCCCCCAACA CCAACAGCACACACACCTCAATTATTTCTTCTTCTTCTTCCTCCCATATTGTTCCTCCTGTGTCAGAAGGGTTTTCTTCT TCTTGGGTTGTTGTTGCTGAAGATGCCGAGGCCAGGGCCAAGGCCTTACGAGTGTGTCAGAAGGGCTTGGCACAGCGAGC GCCACCAACCCATTAGAGGAACCATCATTCAACAGATTTTCAGGTTCTGGGTTCATCTTGGTTTTTTCAGTTTCCCCTCT TTTTTCTTAGCATGCCCATTTTGTTGACTTTGATTGTTGCACACCACCTGTTTGATTAGGGTCGTCAATGACGCGCACAG TCCTGCTACTAAGAAGAACAAGGAATGGCAAGAGAAGCTTCCTTTTGTTGTTCTCAAAGCTGAAGAAATCATGTACTCCA AGGCAAATTCTGAGGTTTTTTACACCTAATGCTTGTGGAATTTTAGATCTTTCACTGTGTTGCATGAACCCTTTTTGCCT AATTTTTGTGTGGTTTTGTTTGTTGGTTAGGCAGAGTACTTGAATCCTGATACGCTCTGGGACCGCCTTAATGATGCTGT TAACACAATCATTCGGAGAGATGAGGCTACTGAGACAGGAGACCTCTTGCCCCCATGTGTTGAAGGTACTCAATTTTTCA TCTTTTATGGATCCACTACTTATAGTTTGTGTCAAAATGCTATTTTGTTGTGTCATTTGGGATATAGAGAGTATGTATTG TAGAGTGAAAAGTTTAGTAATTTTAGCTGCCAGTGATGTGTTTTTCATTTTTGGTTTTCTGGGTATGTTTGATCAGCTGC ACTCAACCTGGGATGCAAACCAGTGAGAACTTCGAGAAGTGATCGGCACAATAACCCCAGAACATACCTTTCTCCAAGTA CTCAACAACCTCCTCCTGGGTCTCCTAGACCTGCTGGGGGGAATCCCTTAAACTATGCAAGAGTGACAACTTCTGCACTT GCATCTGTTCCTGTGTCAAATTCTACCCACCAAAGTAGTAAGGTGATGGGTAACCGTAGCTATCCCTTTTCAGACAATTT CCCTTCTGGTCATCACCAGCCATTGGCAATGGAAGCTAAACCCTCATTGAACTTGGGTTCAGTTTATCCCTTGTACTATG TTTATGATGCCAGAGAGCCTCAACCAAGGTCGACCGCCCTAGATAACCCTTGTTCTGACACCATCTTTGTTGGCAGACCA GTCATTACTCCAGCCCCAGAGACATCTGGAATTGGTCTTTTGGAACACACATCCTATGGTAGGTTTCATCATGCTCCAAA CAGAATTGCTAAGGAAACTGCTGTAGGCACTACTCAGGAGGAGTCACAAGATGGGGAATGTGATTTATCTTTGAGGTTGG GTCAGTGTTTGCATCCTTGTTCCAGCAGCAAAAGTGGTTCAGCATATGGAATTGATGATGTTAGTTTAGGACTTTCTCAG GAGGGCAGCAAGTTCAGTCATCTATCTTTGCAGAAAAATCAGGAGTTTTGTTTTCACCCTAGAGAAGCAGGTTATGGGAC CATTGACCCCAATTCCAGATATAATGTAGAGGGTGGAGATCAGAACTTGGAGGCAACTTTCCGGAAGCGCAAAGCACCTT TAGGTAACAATGAGGAGGATGGGCAATTTTGCCGGCATCTAGGAGTCCCATCCAATCGTTTTATTGGTAGGCCAGGTTTG TAGACAGACTTTTGTTAGATCATATATGCATTTGCAATGCAAGATGATCCAAACATTGTTGAATCCTAGTGTGTAGAGAC TTTTTGTGCATGTGTAGCTCTGCTTGTGAAAAAATCTTAGAAGTTGGGGTTGAGTTGCTAATAGCACTGCTGCAAATGTG AACTGTATATAAAATCTTTACTTGCTTTGTTTAATTTGTGCCTAGCTCTGAAAATATCAAGAGAGAAAAAGTATCAAATG TGAACTTTTGAAATGGAGTGTCTAAATGCAGTTATATTCCCTGAACCAAGTATGACGGTTCATTGTCGCCAAAGTTCATG TTTGGATGCACAGTGGAAAACCATGGTGAAACCAACATCACGGTGACCAAAATCAACTTTCCTTAGCTTTGTGACTGCCC ACATGATTCTGGTGGCTTTTCATCATGTATCCAAACATACACAAAGACTATGCCAACTATAATCTTTTTTCTTAGTTAAG ATTTGCTCTAAACCCAAGTCTATTGGCTTCTGGCTGGCTTTCAGCATTATCTTTTTTCACAAAATCATCAAGTGAGATGC ACCAAGGTTTGATTTTCCTTATCAAGTGATCGGTGACAAAAATAACTACAGTACAAGTTTGTCATTAAACAGCGCAGACC CTAGCTGCATAAAACTGAATCATACTTACTTTTTCAACTGCAATTAGAGATCAAATGGGGAATTCTTTGGTGGGGCAATG CTTCCTAGTTCCTACCATAGGCAATCTACTCTACATTAAGCACGTGTGGCACTGTGTGGATCATATTAGAAATGCAATGT AATGCCTTTACACGTGTCAACTATTTCACTGCCTACCTAAAGAATTTCTCAAGGCCCCCCTAATAGTGTCAGATCACGTT AGCAGTGTGCATGCTTGAATCTATTCAAAGAATCAGTTTGAAGTTTATCTGATCAAGTTCATTTGAAGTGTGAATTTCAA GACATTGTTCAGAGGATAAGCTTCAAGATGTCCCTTAGGATGAATTTCATAATTTCCGCGGACCCTATTCTAATTTAGGA TGGGGCTTTTGGTCCTAACTCTTAACATTTGGTACAACTTGTAGGGGTAATAACCTAAGGGAGTGTAAACGGGTGGAGCT GGTATTGTTTGAGCCATAATTTGATCCAAATCAGTTCACAACTTTTGGATAAAAAACGCAATATAAAACATACCTTTAGG TTATAATTAAAAATAAAAAATGCACGTGTGGTTAATTTTGTTTATACACATCAAATAATAACTCAAGTGATTAATAGATG ACAAAGTTATTGCCTAATGAAGAACTTTCCATTGTGAAAATGTGGAGTTGCTTTATGAAGTTTTCTCTACTTTGAGCGCA TTTATGCAATTCGTGCTCATTAAAACCCACTTTAGAAAAAGTAATGACAACACGAACCTATCATGTTTGAAT
CDS sequence (LotjaGi4g1v0273400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAGGCCAGGGCCAAGGCCTTACGAGTGTGTCAGAAGGGCTTGGCACAGCGAGCGCCACCAACCCATTAGAGGAAC CATCATTCAACAGATTTTCAGGGTCGTCAATGACGCGCACAGTCCTGCTACTAAGAAGAACAAGGAATGGCAAGAGAAGC TTCCTTTTGTTGTTCTCAAAGCTGAAGAAATCATGTACTCCAAGGCAAATTCTGAGGCAGAGTACTTGAATCCTGATACG CTCTGGGACCGCCTTAATGATGCTGTTAACACAATCATTCGGAGAGATGAGGCTACTGAGACAGGAGACCTCTTGCCCCC ATGTGTTGAAGCTGCACTCAACCTGGGATGCAAACCAGTGAGAACTTCGAGAAGTGATCGGCACAATAACCCCAGAACAT ACCTTTCTCCAAGTACTCAACAACCTCCTCCTGGGTCTCCTAGACCTGCTGGGGGGAATCCCTTAAACTATGCAAGAGTG ACAACTTCTGCACTTGCATCTGTTCCTGTGTCAAATTCTACCCACCAAAGTAGTAAGGTGATGGGTAACCGTAGCTATCC CTTTTCAGACAATTTCCCTTCTGGTCATCACCAGCCATTGGCAATGGAAGCTAAACCCTCATTGAACTTGGGTTCAGTTT ATCCCTTGTACTATGTTTATGATGCCAGAGAGCCTCAACCAAGGTCGACCGCCCTAGATAACCCTTGTTCTGACACCATC TTTGTTGGCAGACCAGTCATTACTCCAGCCCCAGAGACATCTGGAATTGGTCTTTTGGAACACACATCCTATGGTAGGTT TCATCATGCTCCAAACAGAATTGCTAAGGAAACTGCTGTAGGCACTACTCAGGAGGAGTCACAAGATGGGGAATGTGATT TATCTTTGAGGTTGGGTCAGTGTTTGCATCCTTGTTCCAGCAGCAAAAGTGGTTCAGCATATGGAATTGATGATGTTAGT TTAGGACTTTCTCAGGAGGGCAGCAAGTTCAGTCATCTATCTTTGCAGAAAAATCAGGAGTTTTGTTTTCACCCTAGAGA AGCAGGTTATGGGACCATTGACCCCAATTCCAGATATAATGTAGAGGGTGGAGATCAGAACTTGGAGGCAACTTTCCGGA AGCGCAAAGCACCTTTAGGTAACAATGAGGAGGATGGGCAATTTTGCCGGCATCTAGGAGTCCCATCCAATCGTTTTATT GGTAGGCCAGGTTTGTAG
Protein sequence (LotjaGi4g1v0273400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRPGPRPYECVRRAWHSERHQPIRGTIIQQIFRVVNDAHSPATKKNKEWQEKLPFVVLKAEEIMYSKANSEAEYLNPDT LWDRLNDAVNTIIRRDEATETGDLLPPCVEAALNLGCKPVRTSRSDRHNNPRTYLSPSTQQPPPGSPRPAGGNPLNYARV TTSALASVPVSNSTHQSSKVMGNRSYPFSDNFPSGHHQPLAMEAKPSLNLGSVYPLYYVYDAREPQPRSTALDNPCSDTI FVGRPVITPAPETSGIGLLEHTSYGRFHHAPNRIAKETAVGTTQEESQDGECDLSLRLGQCLHPCSSSKSGSAYGIDDVS LGLSQEGSKFSHLSLQKNQEFCFHPREAGYGTIDPNSRYNVEGGDQNLEATFRKRKAPLGNNEEDGQFCRHLGVPSNRFI GRPGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 398 | 398 | 5.8E-178 | – | |
| PANTHER | 1 | 398 | 398 | 5.8E-178 | – | |
| Gene3D | 13 | 80 | 68 | 1.6E-6 | ||
| MobiDBLite | 120 | 156 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0273400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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