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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0274800 |
| Transcript ID | LotjaGi4g1v0274800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin, putative; TAIR: AT2G43290.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9LX27|CML4_ARATH Calmodulin-like protein 4; TrEMBL-Plants: tr|C6T8K7|C6T8K7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0274800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64435606..64437327) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAAATTGGGTATCAATCAAACATGGAATTGGAAAAAGTAAATGCAAACCCTGAGAAATTCCCGGTGGAAACGGAGGT ATGTGTTGTGGGGCAGCTAAAAGAGCAGTGAATGGATTCTATTATTCCACATCACATGATTGGATGAGATACTAAAGTGG TCATCATCCTTCCAATCCATAACAACACTTGTGGCTCAGTACTGTTTCTGCATCTTAATTATTTCACCACTGAATGGATA TAGTTTAGCTTAATGAAAAATACAACAATAAACCATCACTTTAAGCTTTTGATTTGTGAAGAATATCACTCAGATTTGCT TTCAGATAAGACATCGCTACGTAATAAACTTTGATATTTACACAGAACAAGACGTTACCGCGTTCACGCGGTTTGTGGGA TCAAATAAAGCACCCCAACCAAACACGCGTAACTTCTTTTTGTGTGCAACACATGTATTCTTTCCGCAACAAGTGTAGCA TACTCTTAGCTCCTAAATTCTATACTCGCTCCCCTGCTTCCTCTGTTTCCTTATCCCTGTCCCTTGTTTGTTTGTAACAC CATGCTTGACCAAAACATGGTTCTAGCTTCACTGTTTCTATCTGTGCTGTTCATTGCAGGCCTCATAAACATGTTCTTCT ACATACCTACCAACAAGATTCCCGCGTGGCTTCAAATCTTCTTCCCCAACAACAATGCTTGCAAAACCAAATTAACTGCG GCATCATCTTCACCAGCTGCGACCAATGTATTGGAGAGGAGTGAGCTCAGAAAGGTGTTTTCCACCTTCGACAAGAACGG TGACGGATTCATAACAAAGCAGGAGCTGAGGGAGTCACTGAGGAACATGAGAATCTCCATGACAGAAACAGAGGTTGATG ATGTTGTTGTCAAGTTCGATTCTAATGGAGATGGGTTGCTCGATTTTGATGAGTTTTGCTTGTTGACTATGGCAATGAGT GGAGGAGATGAGAAAGAGGGTGGTGGGGAAGATGAAGTAGAGGGGAATTTGAAGGAGGCTTTTGATGTGTTTGATAAAGA TGAAGATGGGTTAATTTCAGTGGAGGAGCTGGCTCTGGTGCTTACTTCTTTGGGATTAAGGGAAGGGAAGAAGATTGAAG AGTGCAGAGAGATGATTAAGAAGGTTGATATGGATGGAGATGGTATGGTCAATTTCAACGAGTTCAAGAAAATGATGATC AATGGAGGAAAGCTTGTCTTTGCTACATAGTCCATTACATGCTTTGCTAGTCTCCCGGTCTTGCCCTCTGAGACGCTGCT CGCATAAGTTTCTCCCTGAAATTGATTCTGACTTCAGAATCAATTGTAGAAAGGTTTCGGAAAATGCAACTACTCTTACT AGCTTATTCTAAAATTACTTCTCTCTTAAATGTGAAAATCTATTTTTAGCACACAGTGTTACTTTCCCTCCTACTCAAAT CCACCATGATAACTCGAAACACAGAAAATGAAGCCCTCATCACTGAAAGTCTGTGTGTATTACATGTAACACCACCACTT TGAAGAGATACATGAAATGTAGTGCTTGCTTTGATGTAATATGTGTGTAATATATGTGAATTCCTGACTAGTTTCCAAGA CATTGTATGGTTATGGCTATGAGTGACCCACTAATGTTCTTCTTTCCTATTTTCTTTCAAGTGATTTATTTCATTTTCTT TAATTTTGTGTTAGTGGTGGATGGAGTTGATACTGATAACCA
CDS sequence (LotjaGi4g1v0274800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGACCAAAACATGGTTCTAGCTTCACTGTTTCTATCTGTGCTGTTCATTGCAGGCCTCATAAACATGTTCTTCTA CATACCTACCAACAAGATTCCCGCGTGGCTTCAAATCTTCTTCCCCAACAACAATGCTTGCAAAACCAAATTAACTGCGG CATCATCTTCACCAGCTGCGACCAATGTATTGGAGAGGAGTGAGCTCAGAAAGGTGTTTTCCACCTTCGACAAGAACGGT GACGGATTCATAACAAAGCAGGAGCTGAGGGAGTCACTGAGGAACATGAGAATCTCCATGACAGAAACAGAGGTTGATGA TGTTGTTGTCAAGTTCGATTCTAATGGAGATGGGTTGCTCGATTTTGATGAGTTTTGCTTGTTGACTATGGCAATGAGTG GAGGAGATGAGAAAGAGGGTGGTGGGGAAGATGAAGTAGAGGGGAATTTGAAGGAGGCTTTTGATGTGTTTGATAAAGAT GAAGATGGGTTAATTTCAGTGGAGGAGCTGGCTCTGGTGCTTACTTCTTTGGGATTAAGGGAAGGGAAGAAGATTGAAGA GTGCAGAGAGATGATTAAGAAGGTTGATATGGATGGAGATGGTATGGTCAATTTCAACGAGTTCAAGAAAATGATGATCA ATGGAGGAAAGCTTGTCTTTGCTACATAG
Protein sequence (LotjaGi4g1v0274800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDQNMVLASLFLSVLFIAGLINMFFYIPTNKIPAWLQIFFPNNNACKTKLTAASSSPAATNVLERSELRKVFSTFDKNG DGFITKQELRESLRNMRISMTETEVDDVVVKFDSNGDGLLDFDEFCLLTMAMSGGDEKEGGGEDEVEGNLKEAFDVFDKD EDGLISVEELALVLTSLGLREGKKIEECREMIKKVDMDGDGMVNFNEFKKMMINGGKLVFAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 29 | 222 | 194 | - | – | |
| Gene3D | 30 | 142 | 113 | 7.8E-22 | – | |
| PANTHER | 46 | 212 | 167 | 1.2E-70 | ||
| PANTHER | 46 | 212 | 167 | 1.2E-70 | – | |
| ProSiteProfiles | 64 | 99 | 36 | 15.099 | ||
| SUPERFAMILY | 65 | 214 | 150 | 1.03E-40 | ||
| Pfam | 67 | 126 | 60 | 3.2E-15 | ||
| CDD | 68 | 126 | 59 | 6.80904E-16 | ||
| SMART | 68 | 96 | 29 | 2.6E-6 | ||
| ProSitePatterns | 77 | 89 | 13 | - | ||
| ProSiteProfiles | 100 | 135 | 36 | 10.971 | ||
| SMART | 104 | 132 | 29 | 0.14 | ||
| ProSitePatterns | 113 | 125 | 13 | - | ||
| Gene3D | 143 | 217 | 75 | 2.4E-21 | – | |
| ProSiteProfiles | 145 | 180 | 36 | 14.792 | ||
| SMART | 149 | 177 | 29 | 8.0E-5 | ||
| Pfam | 150 | 212 | 63 | 1.1E-12 | ||
| CDD | 150 | 212 | 63 | 1.02101E-17 | ||
| ProSitePatterns | 158 | 170 | 13 | - | ||
| ProSiteProfiles | 183 | 218 | 36 | 14.792 | ||
| SMART | 187 | 215 | 29 | 1.5E-5 | ||
| ProSitePatterns | 196 | 208 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0274800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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