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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275500 |
| Transcript ID | LotjaGi4g1v0275500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein; TAIR: AT2G10940.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein; TrEMBL-Plants: tr|I3SI27|I3SI27_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64583110..64585915) extracted from Lotus japonicus Gifu genome v1.2.
GTACTTTTTCTGTTAAGTACTTTAGTCTTCAATTCCCTCAAATTTACACTTTACTCTAACAAGCACAGAAGGCCGAAGAA GCTATGATTTGTGCAGTATGCAGTAATATAATTAACCCCATCAGCACATTATTTTCTGGGTCGACATGATCTAAAATCTT GTTGTAAATACATTAAGAATTGATTCATCATGTACACTTGTAATTGTAAGGCTAATTTTGCCAGCTTGCAAAATTTGGCA TTAGATTGTAGCTATAGCCCCATCTTCACGTGATGTTTTGTTTGCTTCTCCTCGTTACTATTCCTATATATCCCCTCTTC CACCCTTCACAATATTCTCACTACTACACTCTCTCATTCTTCACACTCTCTTTCTCACAAAGAGAGAAACCATAAGCATG GAGTCCTCAAAGATCCATGCTTACCTCTTCCTCTGCATGCTCTTCCTCTCCTCTGCCGCCCCCATTCTCGGTTGCGGCAC CTGCGGTAAGCCCGTCCCAAAGAAACACAAGCCCAGCAAAAAGCCCGGCAAGCCCGTGAAGCCACCAGGCATAGTGCCTC CTATTGTGAAGCCACCAGGCATAGTGCCTCCTATTGTGAAACCACCAGTGATATTGCCTCCGGTTACAGTGCCTCCAGTT ACAGTTCCTCCAATCACTGTCCCTCCGGTTGTGAAACCCACTCTTCCTCCGATTCCAGGTGTGACACCCATTCTTCCTCC GGTTCCGGTGCTGAACCCACCAAGCACTCCTACTCCTACTACTCCTGGTTCTGGTTCATGCCCACCACCAAAGTCTCCTC CTGGTGGCGGCGGTGGTTCGCAGGCGACATGTCCCATTGATACGTTGAAATTGGGGTCTTGTGTGGATCTGCTTGGCGGT TTGATTCACATTGGGTTGGGTGACCCAGCTGTGAACAAGTGCTGCCCTGTGCTTCAAGGGCTTGTGGAGGTTGAAGCTGC TGCATGTCTCTGCACCACTTTGAAGCTCAAGCTTCTGAATCTCAACATCTATGTGCCTCTAGCTCTTCAGCTCCTTGTTG CTTGTGGGAAGACTCCTCCTCCTGGCTACACCTGCTCCCTCTAAACCAGTTATAAGGTACTTCCCCCTCCTGACTAACAC CCTCCATAAAACCCTACAATATATGTTTTGGTTAATTTACATTTTCAAAGAGAATGATTTGCACTCATTCACATAAGGGT ATAGATGACGCTCAAAATGACAAAGAAAAAGATATGAAAATGAAATAATGAATGTGATATAATAGATGTGGTAAGAAGAA AGAGACACTAAAAAAATTAGGTGTTTAAACCGTATCTGCACCATTATAGTGTCCCAGTATTTTCAAAGACCTATTTCTTA AAATAATAAATAAAGAATCATTTTGTCATTCACTTCTTTGTTGTTAATTAACAAAATGAGATACACATAATTCTTTTTTA TAAATATTATCAGTTTGCTTTTAACTATAGCATGTTTAAAAATTCATCTAAATTTTAAAAGCTAAAATTAATTATAAAGA TAAATTTTTATGAGTAGCTTTTAAGTGTTAGAATTAATTCTTAAAATAATTAAGCTGATCAAATTTTGAATCCGCATTTA GAAATTGAAAACTTTAATGCTCAATCATTAAGTTATCTTCTCTTTCAAATTAAAAAGAAAAAAAAAAGTTCTTTTCACCA TTGATTAAGTTTATATCTTTATCAAAGTGGTTAACAACATGCATGTTTATCTACCTTTATTTTTGTGCACGCAGTGGAAA AAGTTTCTAATTTTTCTTTAAAATCTACTACTTTGGAACGCTAATTGGGACTCCATGCATATTAATTAAGCTTATAGGCA AGAACATGAAGAATTTAATATAGTTTCAAAAGATTTGTGATTATCCGAAAACAATAACTTTTTTGTCTACTCAATTGGAA ATTCTTAAATTAATTCGGGAATATTTGCTGATAAAAGCTACATATTACTTCTATATTATAACTTTCTCCATTTCAAAAAA AAAAATTATAACTTTCTCTAACTTTTTCCAAGAAAAAAATAGATGATGTATAAAATAATATAAGGTTTTGTAAATATTCT TTTTGCAACAGGAGAGGAGTTAATCACTGTTTTTACATTCTTCCTTTTACTTTCTTAATTTCTTGAAGCTGTTGCGATGA TTATATAAATGTTGTCGGGGACACTAAGTACATCACATGGAACTATGGATGCGTGATTTAATATTTCGAATTGGAATCAG CAAATATCGTCCTGTTTTCTACCCGTGAACTTGAAGTATTTTGTCTGATTGTATGTCACGTTCTATTCTTTGCAGGTTAA TGGATTCAAGAATATATGGTCCAAATCGACATGAGAGGATGTCAATTGAGCCAAGCCACTCTCTCTTTTTTTTTTTTTCT TCTTTTGATTGGAATTGATGTTGTTTGTTTCGCTATTAATTATTTGTAAAAGTACCATTTGTTTTTAATTGAGATTGTTT GCATGTATGTTTAATCCTAAGCAAGTAAAGTAGCTGCAAAGATTATTCTATGTGCCATTTTATTTTTTATATTTATGTGA TTTGTGTCTTGTTGAATATCAGCTTCGTGTTCTATTGTTATTGCATGAGATTTGTTTTCAATATTATTGGGGATGTGTTC AATCTCGAATCTCTATGTAGAAAATTAAATAATGTTATGAACACATGAGGACATTGGAACACATATCATTGGAAGTCAGG GAAATCTAAAATAAGGATAAAATTTATTTTAAAATCATTTTAAATTTTAACTAATTCGAGAGTCATGTGATTCATTGTTA ATGGAT
CDS sequence (LotjaGi4g1v0275500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCCTCAAAGATCCATGCTTACCTCTTCCTCTGCATGCTCTTCCTCTCCTCTGCCGCCCCCATTCTCGGTTGCGG CACCTGCGGTAAGCCCGTCCCAAAGAAACACAAGCCCAGCAAAAAGCCCGGCAAGCCCGTGAAGCCACCAGGCATAGTGC CTCCTATTGTGAAGCCACCAGGCATAGTGCCTCCTATTGTGAAACCACCAGTGATATTGCCTCCGGTTACAGTGCCTCCA GTTACAGTTCCTCCAATCACTGTCCCTCCGGTTGTGAAACCCACTCTTCCTCCGATTCCAGGTGTGACACCCATTCTTCC TCCGGTTCCGGTGCTGAACCCACCAAGCACTCCTACTCCTACTACTCCTGGTTCTGGTTCATGCCCACCACCAAAGTCTC CTCCTGGTGGCGGCGGTGGTTCGCAGGCGACATGTCCCATTGATACGTTGAAATTGGGGTCTTGTGTGGATCTGCTTGGC GGTTTGATTCACATTGGGTTGGGTGACCCAGCTGTGAACAAGTGCTGCCCTGTGCTTCAAGGGCTTGTGGAGGTTGAAGC TGCTGCATGTCTCTGCACCACTTTGAAGCTCAAGCTTCTGAATCTCAACATCTATGTGCCTCTAGCTCTTCAGCTCCTTG TTGCTTGTGGGAAGACTCCTCCTCCTGGCTACACCTGCTCCCTCTAA
Protein sequence (LotjaGi4g1v0275500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSKIHAYLFLCMLFLSSAAPILGCGTCGKPVPKKHKPSKKPGKPVKPPGIVPPIVKPPGIVPPIVKPPVILPPVTVPP VTVPPITVPPVVKPTLPPIPGVTPILPPVPVLNPPSTPTPTTPGSGSCPPPKSPPGGGGGSQATCPIDTLKLGSCVDLLG GLIHIGLGDPAVNKCCPVLQGLVEVEAAACLCTTLKLKLLNLNIYVPLALQLLVACGKTPPPGYTCSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 228 | 203 | - | – | |
| MobiDBLite | 32 | 52 | 21 | - | – | |
| PANTHER | 42 | 227 | 186 | 1.7E-70 | – | |
| PANTHER | 42 | 227 | 186 | 1.7E-70 | – | |
| MobiDBLite | 110 | 136 | 27 | - | – | |
| MobiDBLite | 110 | 142 | 33 | - | – | |
| Gene3D | 141 | 228 | 88 | 1.6E-19 | – | |
| CDD | 143 | 226 | 84 | 1.84297E-15 | ||
| Pfam | 144 | 226 | 83 | 2.2E-27 | ||
| SMART | 145 | 226 | 82 | 1.9E-5 | ||
| SUPERFAMILY | 147 | 227 | 81 | 1.85E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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