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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0277600 |
| Transcript ID | LotjaGi4g1v0277600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-5; TAIR: AT1G05500.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|A0A1J7GHG0|A0A1J7GHG0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0277600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64771504..64779451) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTCGTGTTCGGCGTGGTGGCCGGAATAATAGTCGGCCTCGCCATCATCGTCGCCTTCGTCCGCTCCGAGAATGC GCGCTCCGCCCAGCGATCCCAACTCGCCGCCACCGTCGCCGCTTTCGCCAGAATGACGGTGGAAGATTCCAGAAAACTTC TCCCTTCTCAGTACTACCCTTCCTGGGTCGTCTTCTCCAATCGCCAGAAGCTAACTTGGCTCAACTCGCATCTCACCAAG ATCTGGCCCTATGTCAATGAAGCTGCTTCTGAGCTCATCAAAACCTCCGTCGAACCGATTCTGGAGCAGTATAGACCCAT GATTTTGGCTTCTCTGAAGTTTTCCAAGTTCACTCTTGGCACTGTAGCGCCGCAGTTTACAGGTTTGTTCAGTTTTTTGA TCCAATTGCTTTGAATTTGTGAATGTTATCATCTTGCAGTTGATTTAATCTGTTTCTAGATTGTGCCTCTTTGGATGTAT TTGTGAACTGTTTGAGATTTGTTATGCATTTTGATTGGTAAAACATCAATGTAGATGCGTTTTCTGAATCAATATATTGA AAGCTTAAACTTAAATGCAAATGTGCATTGATGGTATTATACAACGGCCCCGTTTGGAAGAGCTTATTTGAGCTTATCTG ATAGCATAAGGGCTTCTGTAAGTGTTTGGGAGAGCTTATGTACCAGCGTATGTACCATAAGCTGTTTTGAGCTCATTTTC ATAAGCTACTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAATTTTTA AAAATAGTTGATGAATAAGCGCTTATGGATGACCATAAGCGCTTAATTAAGCTCATTTGATAAGGTTTATGTATTTTTGT CTTTATTTTTATAATTTTTACGCTGTCAGGTTATCCTGTAACTGCTTTTACGTTTTGAAGATCTTTTGCTTTTCGATGTC ATGCGTTTCTTTGGAGCTTCTAATTTTTTTTTTTCATTAGGGGTGTCTATAATTGAAGATGGTGGAGTGGATGGTGTTAC AATGGAGTTAGAAATGCAGTGGGATGGGAATCCTAATATTATACTTGATATTAAAACTCTGCTTGGTGTTGCACTACCAG TGCAGGTACTTTTCTCTAAGTTTTAACTGCCACTGCATGTGTGGTTACTACTTCTACTTGCTTAGGTCATCGTATTTATT TCTACCTGACCTTACCATTGAAGGCTCCATGCCAAAAATCATGTCTTTGTATTTTCCCGTTCAATCAAACTGTTGTAAGA CCCAAATTCTTCCAGTTTATTTAATTGGATATATTGTCATTTAGCTCTGAAACTAAAAGTAGTCCTAGTCTCCTAGACTT ATTGGTTTTTTTTATCTTACAAAATAGTTAACTAGGGTTATTCCTGAAAAGGGATAGTTGTGACTAAAATTATAGGGATA GTTGTGACTAAAACCTTTCTGATTTTGTGCTCTTACACTCTCTGCTCTTCAGGTAAAAAATATAGGATTTACTGGCGTTT TCAGGTTGATTTTTAAGCCGCTAGTTAATGAATTTCCTGGCTTTGGAGCAGTTTGCTATTCATTAAGGCAGAAGGTATGA TATCTCTTCTTAAAATATTAATTTCCAACTTGTTTCAGCGCCCTTACATTAGTGCTAGAATTTCAATGGATTTGTTTGAA TTTTTTTTTTGCGGTACAATGAGGCCAACCATCACAAGCCATATAGTTTATCAAGACAATTGCATTATCCCCATGGATGG AATCCATCCAAATGATTTATATTTGCATTTAATTTTTCTGCATCATGGGTCAGCGTTTTTGCAAAGCTAAGGTTTGATGC CTTGTGACATGGTGGTTGTAGACCTGCAGTTACTAGTAATGAGAACAGTCTCTCTTCTCATTGAATCTCTCGCTTCATTG TGCCTTTTTGCCCCCACATGCACATGGATCCCGCATGCACTACTTTCCTTTTGCCCATATTTTTTTGCATGCAAGAAACA TTTGCAGAGCCGCAAAGACATTAAGCTCCTGTGAAGACATGTTTATTGTATAATACATTTAACCTTTTCAGAATATTTTA CTTTCAGAAAAAGTTGGATTTTACCCTAAAAGTCATTGGTGGCGACATATCAACAATCCCTGGATTATATGATGCCATTG AGGTTTGGACTACAACTCTTGTATGTTAATGATACCGCTTTGCTGCTTTACATGATTCTTTAACCTTTTGCAATATTTTC AACATATTTCTAATGAGAATATGTCATGTTAATCTTCATAGAGCACATCATGTTATTTGAAAGCCTTCCAAATACTGTTG CAGAAACCTGTAACTTTAGTTATTTTCATCTTCCAAGCAGACGACGTGTTCAGGATATGCTCGATGTTGGTTAAAGAATG AATTATATCAGTTCAAGTAGATTTCTCGATTTGTGTCATTTGATTTTGCTGATTTGCCATCAGTTGAAATGTAATATGAG ATTAATTTTCACTTTTTTTAAAAAGAAATGGCAATAACTATGGATATATTTTACTTGGCTCAGAGAAAATCAATTTTGGT CAAGGGAACTTTTTAAATTGAGTTTTAGCTTTGCTTACCAAATATCTTTAATATACTCAAGATGAAGAGAAATTTAGGAT AATGAATAGTTTTTCTATGAATATGCTCGAGTGAAAACACACTCAGTAGAGGGCTTTTTATATGCATCATCACTATAGAG ATAATAAATTTAGAATGCAGTTTACAAGAAGAATAATTAGGCTAATTCTATTCCCTAAGACACATTGAACTTATGCAACT TGGAAGGAACTTCAAGTTAGTACAGTATGTTATTTCTAACATTCCCCCTCGAGTTAGAGCGTAGAGATCAAAAGCATACA ACTTGTTGCAAATATAAGATATTCTTGGTCCTCAAAGAGCTCGTGTATTTTCTCCATTGTTTTAATTATACCCTTACTTG TAAAGTCTCTTGAAATGAGCTTTTAAATGGCCATTTAACCAATAAGCTGGTCTATTTTTTCCATTGTTTCAGTCTTTGAA TGTACCTTTGTTACTTTTGGTGTTTTCTAGTGTAACTATATCTGATGCTGCAATGTTTTTCTTATTTATAGAATTTATAT TATCCACAATTGTGATCTTTTATGAACAGAATAGTTAGCTTTTCTTATTATTCTTTCCCTTTTCTTCTTTCTTTCCCTTT CTCTCCATTAAGTGAATTAGGTATGCTTTGTGATAATTTGGTCTAGTGAATTATTACAGGGGACAATCCGAGACGCTGTT GAAGATTCTATAACATGGCCAGTGAGAAAAATTGTACCCATCTTGCCCGGAGACTATAGGTAATCAATTAAACAGAGAAG GATCACTCAAGAACACTTCAACTGTATCATTGTTGGTCCTTTTTTGTTATTGCCAATCTAAGTTTTTGGTTTTTGGTTAG ACTTCGAAGTTTCTACTGCAGTTGAGTATAATATGTTTTCTTTAAGTTTCTATTTTGAAATCCTTATCTGTTTAGTTATT TTAGGACTTGAATCAATCGAAGATAATATGTAGTTATTCTTTCTTAATCTTAGGAAATTAGTCATTTTTTCAAAGCTCTA TCAGCAAGCTTTAAAAAGAAAGCGATTATTTCCTCAAAATGTGTTAATCTAAATATGCATGTAATCTGGTAATTATGTAA GTTATAACTGCCAATGAGCTATAAACGAGATTCTGCAACTAGTTTCATGATACTGATTATGGTTATTCCAATTATCTTTT ATGAAATAGGGAACATAATACAGAGAAACATGTTTAAACGCTAGACTAAGGGTGGCCATTTGAAATATGTATCTCAATGT TACTTTATGTCCAGTCTACATGTCTAACTTGTTGACCTGTCAAATTTTGGCAGCGCATTCACATGGCTGCATCAATCACA GGATAAATTTTCAGGTTAACTTATATTGAAATTAGAGGGTTTAAGCACAAAAAAAGGAACATTTAGAATACAAATTTATA TTGATATTTGGTATGAAGGGTGTCTTACAAAATACAAACAATACTAACCCTTATTCACACTATTACTACTATTAGACTCC TAATCCTGATTAAGAAGAGTATTATGAAATATAATGATAGTATGAGATATTTACTTGATATTCTAGCAGCTAGTTGATCA CATGATTACTTCCACTATCGTCTTTGGCTGGTTAAAATACAGATTTGCCATTTTGTACCTAACTGTATTTTCTTGTTCAG TGATCTGGAGTTGAAGCCTGTGGGGATATTAGAAGTAAAACTTGTGCAAGCAAAGGAGTTAACAAACAAGGATATTATTG GAAAATCGGATCCATATGCTGTACTATACATACGGCCTATACGTGACAGAATGAAAAAAAGCAAGACAATTGTAAGTTAG TTTCCTTTTCCTGGCAGTTTCTGTCTTTTTTTTCTCTAGCAATTTTTGGTTCTCAATTCTGGAAGAAATAACAGTAATTT GTTTTCTCTCTCCAGAACAATGATTTAAATCCAATTTGGAATGAGCACTATGAATATATCGTTGAAGATGTGTCCACTCA ACACTTGATTGTCAAGATTTATGATTCGGAGGGTTTGCAGGCGTCTGAATTGATTGGATGTGCTCAGATACGGCTTAGTG ATCTTGAACCTGGTAAAGTAAAAGATGTGTGGTTGAAGCTAGTCAAGGACTTGGAGCTGCAAAGAGATAACAAGAACAGA GGGCAGGTGAGAAATTTTATCATATATGGTCAGAAGGGTCTGGTACGAGAGAAAATGGAAGGAAAGAAAGTTTAAACTTT TCTTACCTATTGTTTGATTGTGTAGAAAGTGGGGGGTTGAAAATTTAATGTTTATGAAATTACATAAATAGTCCCAAGTA AAAATGAAATGTACTTAAATAAAATGAATGTATTTAAAAAAGATCTTTTTTATGCAAAAGAATTTTTTATATCATCGTCA TCATTATTATTTTTATCATTATTGTTATTATAAGATCTGAAATAGGGAGATTGAAGGGTATTATAAAAAAGGAGAAATGG CCCAAATTGCAATTGTCGAAGATCTTCACAGATTATTGAGTGGATTAATAAAATTGCCAAAATTGCAATCGATGAACATA GTCCTATAATATGGGTGTTATAGACAATTGGCTCAAAGATCCTTTGTATGTTTTCTGCTCATCTCATTGTAAAAAACTTT TTAAGTGGGCCCCGTACTCTTTTTTCTTCTTTCCACTCTTATTTAGTAACCAAATAATGGAAAACATGGCTTTATTCCCC TTTTCTCTCCTCTCTTCTTTTCTTTCCTTCCCTTTTCCATAGAACCAAACAATGTATTAATCTTTGATAGGATATTTATT TTGAGGAAAATGTAGATTTTATTAATATTATGAATCTAATAGGATTTATCTGAATTTTTGTTTATTTGGGATTTTTTGTC TTCAGTTTATAGTATTCTTTGGATTTATTATGTTTTAGAGTTTGATGATTGAATAAGCTACAGTTTTCTTCAGAGTATTT TATTTTGACTGAGAACCTTCCACATCTAAGGGAGTGTCTTGGGTTTTTCAGGGGAGTATTGCCAATATAAGCACTCTTTG GTAATTTGATTTTACACCACCCAGACGATGGGAGGAATATAACATGGACACGGCACCCTCCAACATAGATCATATACTGA AATAATTATATAGTTATATATGTTAACAGCCTGAGCATAAGAACATAAACACTTATGAAGTGCGTTTAAAAAAAGTATTT AAGTAGTATTTAATTTCATTTTTTTGTTATTACAGTATTTGAAAAATTGTAACTCCTGAAATTATTGTTTAAACTTAAAG TTTTTAACTGTTGTATTGTTAATCCCGCTTTAGGTGCTTTATATTCTTTATTTCCTGAGTATTAATCAATATTAATTTAT AGGCTTAACCTCACTTTTGGTCCCTGACTCTCTAGTATGGATAATGTGTGATTTTTGTTCCCTTAATTCTTTTAAGCTGA TTAAGTCCATTTACTTTTAAAATTCAACAAATTTAGTCCTTCTCTCAATTTTTATCTCTAAATTAACAGAAGGTATCGGT GAAATTTAATATATTGGTCGATGAGGTTTGTATGGAAGAAGGTTTGAAGTGATTTAATCATTTCAATTTGAAAATAATTT TCTGATGGAAGTACTTAATTGTAGCCATTACAAAATTTAAGGGAGTAAATTTGCTCAAAAAATTATTAGGGGATTAAAAC CACACATTAACTATAGTACGAGGATTGAAAGTATAATTAAGCCTTATTTATATCAATTTCTTAGTTTGTAAACAGTTGTT GAAACATATTTTCTTTGTCTGACATGATAAATATATTCGCTTTTCTGCTAAATGTTACTTTGAAAAACAAATTTTCCCTC ATAGTTAAGTGAATTCAGACATGATATACTTATTGTTCTTTCGGCTTAGGTACATTTGGAGCTTTTGTACTGTCCTTTTG GCATGGAGAATAGCTTTACCAATCCATTTGCTCCCAACTACTCAATGACATCCTTGGAAAAGGTTCTTAAAAGTTCAACA AATGGAATAGAGGCTAATGGAAATGAAAATGCAGCTACACAGAAGAAAAAGGAGGTTATTATTAGAGGAGTTCTTTCTGT TACTGTGATATCTGCTGAAGAATTGCCTGCAGTAGATTTCATGGGAAAATCTGATCCCTTTGTTGTTCTGACCTTGAGGA AAGCAGAAACAAAAAACAAAACCAGGGTAAGATTTTGATGGACCAAGAACCAAAAATAGCATATAGTTTTTAACCATTTT GAGAATCAGAGATGAGCCTACAGCTGTTATTGTTAATGAACTTTATTCTCTCATGTAAGATCTTTTTTTCTTTATTCTTG GGGTGGGTTAGGGGCATTGGGCGAGGATATTTATAAGGTGCATTGTAAGTCTGTTGCTGCTTTCCAGTTTTATGGCTTTA TTAATTATCAACATATTATGAACTTGACCCTGAAAGTTTGTTCTCAGGTCGTGAACGACAGCTTAAATCCTGTTTGGAAT CAAACATTTGACTTTGTTGTTGAGGACGGATTACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTTGGAAA GGTAATACATTTTGCATTATGTTGAACTGGTTACTAGACTGCCTTTTTTTCATGTCTTGATGACTTGAAGTCAATTGGCA CTGAACTTCAAACGCAAACTATGTGGACTACCAATTTGGTATTAACAGTATCAGAACAGCTGAATGGAGGTTAGAAATCT CCGAATGTATGGGCCTTAACTATCATTACTAAGATGGATACCGGATTTGGTTTTCAGCAGAATAATTCTAAATCCTCTTA CTAATTTCTTCTAATAATAATTCTAAATTTGTAATTACTAAATAAATTGAATGTTTTAAGATGTTTAATGTTTTCATTTT TTCATTTACTAAATGTATCCATTATGTATATTCGCATGATGTGTAGTTACTAAACTTACTATTAAAAAATGCAACATTTA ATAGGTTAACAACTTAAAAGTTGTACATTTCAATAGATATTTTCCACTTGATTTATCAATCAATGTTCTTAGATCACTTG TTGGCATTGTCATGTTCAAATTGTTGTTTGAATTTATTGTTAAAAAAAAATTAATTCCCACCTTTTGTTGTAGATGTTAT ACTCATTATACTTGAAGTTAAAACACTCTGCACAGAAGTGCAAATAAAATATCTGCGACTTAGTTTTCTGAAGTTGATAA TTTTTGGTAAATTCTGATTGTTCTCTTTGCAATGCACGCAGGATTATATGGGGAGATGCATATTGACGCTTACCAGGGTA ATACTGGAGGGGGAATACAAAGAACGTTTTGAGCTAGATGGTGCCAAATCTGGCTATTTGAATCTTCATCTCAAGTGGAT GCCCCAACCAATTTACCGCGATTCTTAA
CDS sequence (LotjaGi4g1v0277600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCGTGTTCGGCGTGGTGGCCGGAATAATAGTCGGCCTCGCCATCATCGTCGCCTTCGTCCGCTCCGAGAATGC GCGCTCCGCCCAGCGATCCCAACTCGCCGCCACCGTCGCCGCTTTCGCCAGAATGACGGTGGAAGATTCCAGAAAACTTC TCCCTTCTCAGTACTACCCTTCCTGGGTCGTCTTCTCCAATCGCCAGAAGCTAACTTGGCTCAACTCGCATCTCACCAAG ATCTGGCCCTATGTCAATGAAGCTGCTTCTGAGCTCATCAAAACCTCCGTCGAACCGATTCTGGAGCAGTATAGACCCAT GATTTTGGCTTCTCTGAAGTTTTCCAAGTTCACTCTTGGCACTGTAGCGCCGCAGTTTACAGGGGTGTCTATAATTGAAG ATGGTGGAGTGGATGGTGTTACAATGGAGTTAGAAATGCAGTGGGATGGGAATCCTAATATTATACTTGATATTAAAACT CTGCTTGGTGTTGCACTACCAGTGCAGCCGCTAGTTAATGAATTTCCTGGCTTTGGAGCAGTTTGCTATTCATTAAGGCA GAAGCGTTTTTGCAAAGCTAAGGTTTGA
Protein sequence (LotjaGi4g1v0277600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFVFGVVAGIIVGLAIIVAFVRSENARSAQRSQLAATVAAFARMTVEDSRKLLPSQYYPSWVVFSNRQKLTWLNSHLTK IWPYVNEAASELIKTSVEPILEQYRPMILASLKFSKFTLGTVAPQFTGVSIIEDGGVDGVTMELEMQWDGNPNIILDIKT LLGVALPVQPLVNEFPGFGAVCYSLRQKRFCKAKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 189 | 189 | 3.3E-90 | – | |
| PANTHER | 1 | 189 | 189 | 3.3E-90 | – | |
| TMHMM | 4 | 22 | 19 | - | – | |
| Phobius | 6 | 22 | 17 | - | – | |
| Phobius | 23 | 195 | 173 | - | – | |
| ProSiteProfiles | 67 | 195 | 129 | 19.071 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi4g1v0277600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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