Transcript — View — Lotus Base

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LotjaGi4g1v0279500.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0279500
Transcript ID	LotjaGi4g1v0279500.1
Lotus japonicus genome version	Gifu v1.2
Description	RING/U-box superfamily protein, putative; TAIR: AT1G75400.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9D304\|RN128_MOUSE E3 ubiquitin-protein ligase RNF128; TrEMBL-Plants: tr\|A0A1J7IL27\|A0A1J7IL27_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0279500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:64999263..65002343) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCTCAGCCATTAACATTAACTTCATTTAGTTTTTTTCCTTCCTTTTTCTGTTTGTTTTCTTCTAATAAAATTAATTA CCATTTCCTCATCACACCTTCTCCCAGACGGATCATTACCCCAGTTTGTGTTCTCCTTCCTCAGGTAATTTTTCTTTAGC TTTATTTCTTTCTTCTTGTTTTGTTTTCAAGTGTTGTCACTGCAAAATAGTTACATTAATTGAAGTGAACAAATAAAAAC TCTCTCTTCCCCTTATTTTTGAGGCCAATCCTTTTTGTTTAAGTGAGAATTTTATTCACTGTTGCTTTTTGAGGAAGTCA AGGAAAGAAATTGACTTTCTTCACCCTTTTCTCCCTAGTTTTAAGTGGGTTTGGAAGGCATTTTCTGAATCTAAAAAATG AGGAATAAAGGAGTGCATATTGCTTTGTAGTTTCTTGTCTGGTCTCTTTCATTCTCTGAGTAGTTTCATGAGCTTTTCTT GACTAGCAAATTGTTCCTTATCTGCTCTTTGAACTATGACCAGTTTTTTTCAATAGCATCATCGATCTTAGACTGCTTTA TTTTCACCACTCCTTCATCACATTGTATATTCTTTTGCTATGTGTGCTCTATTTAAATGGCTAAGATTTAGGCTTAACCA ATGTATCAATAGATTGCATGCCAAGTTACATTATAGAATTAGGAAATTGATGTGATGTGATATAGTTTGCATGCTATGGT TTTGGGGGCTAAGATATTGGTCAGTATGTTTAGTTTCTCACACTAACAGCATATCAACATTGAAATTGTAAAACCTTGCA ATGAAATTTAATTGCATTGTGAATCTTTAAGAAACAACCTAAATGGTCTCTTTATTTCTTTTTCCTCTCTGTTATTTATT TTTAGTTTGTACTCTATGATGTGTGTGATTGATCATAAGCCACATTACTAAATGATTGTTGTCCTTTTCATCAATATTGC AAAGCCATTCAATGCTCTTCCAACATGGAGCTGTTGTCGGATGAGGTTGGCTTTCTTCTCCCGTTCCTTCCATGATAAAT TTAAAGATCCCTCCAATTTAAATCTCTCTTCCACTTTCATCATTCTTATTCAATTTCCTTACATCACCTGTTGATAAGGT CATAAATGAATAAACTTGTGCACATACAGAATGTACTCTTTTTCTTATCTTTGGAAGTAGTATGAAAGTGAATTGCAAGC ATCCATTGCTTCCTTTTGATCTCATTATACATAATTGAATAGTATGTTTGTATCGGTTTCTCTTACATTACAATCAATTC TAAAACGCAGAAGCTACTCATAAAAGTTTCTCCCCAAAATTGATGCTACCTTGAGTGCAGACAGGTTTCAAAACATGCAC TAATATCATTTGTCCCCCTTTTCTTGTTTCATTCCAGAAGCCTTCACATTCATGCAATCCTGGTACACTCCCACTACCAG CTGTATTGGACATAACAGATGGATCTATGAAGCTGCTAAATACCCATCCAAACATGACACATCATCACCAGAGTCTTGGC CGTTCAATATTTTTGAAACGTTCGCGGCATTATTATGGCCACCAATATTCTCGACGAAACTCTGCTAACCATGCCAGTGC ATCTTCTTCTCGTGGAAAGGGAGCTTCATTTGATGACAAGCTTTCTTTCAAGTTGGCTCCCCAACCCAACACACAGCCAA GACAACATACAGGTTTGTCTTTAATGCTTACTTTTTGTTCTGTACTAGTTAATTTTCAGTATTTCAAAATTAGTTTATAC TCATTATACTCTGATGGATACTTTCTGTAGAAAAATTACTTTCATTGTATGATGTCTTGGGAATGTTAGGATGCTTTTGT GTTTTTGATGCGAGCAATATTGAACATTACAAGAATGCTTCTTATTTGTTGTGTTTTCTCTTTGGAGAATCGTTCTTGTT GTTAGATATATATTATAAAACATTCATGTACATGATTGATTTCATTTAGGCCAGGTCTTGGTTCGAGTCTTGTAAATGGA AAAAAATTCACTGGAAGAGTTAGCTAATCCCACCATGATATGAATGTTCATGATTCAAATAGAGTTGCCTCCCGTGGAGA TGCATGCAGCATGCAGTCTACACAAAAAATAAACTTTTGAGATAATTAGCTCATACCATGGTAGAAAATTGAAATTCAGG ACAAATATACGAACTTGTGTTCCAGACATTTTGCATGAGGGGCGTGCTAGAAATATATAATATAAAACCATTAACATGTC ATTTACCCACTAGTTTTTGCGATAATTGATTCATGCACTTGTCACCACTTCAGTGCTGCTACTTTGGGACTGGGAGATTG AAAACTCTTGTGCTCTATCCTTTTTTTCTTTTCTTTTCAGAATACAGAGAAAAGACAGTTTCTAGGCCAGAGAGAATCCG TTCAAGTTCCTTAGCGATGGATGCAGTATCACCAGATGCAATGAAGACGATTTGTGGGATTTGTGAGAAGCCATTGAGGC GCAAATTTAATTTTCTTGGAAATTCTGTGTCTTGCAGTGAGCTTTCAGTTGTGGCAGTTTTAGTATGCGGTCATGTTTAT CATGCAGAGTGTCTGGAGCACGAAACTCTGATTGAAGAACTGCGTGATCCGCCATGTCCTATGTGTGCATGTTCACTCTT GCATGCTAATGACTCTAAAGGGCATGAATAGTTTCCTAGCAGGTGAATGTTGCCATTTGATGCTGATTATCTACTATGGA ACAAAATTTTGTGAAAGATAACAAAATGCTCTCATGAAAGGTAGTTCATTTTGTTGCAAATGAACTAGTAGCTAGGATAA AGAATTAAAGATCTTGTAGACTCTCAGGATATGTGGATTAGGGAGAGTTTGTATAATTTCCTGTATATCACTTTTATTTT TCACTAGGCACATATGACATAGGGGATCATAATATTGTATCACTTACTTAATGCTTTGGTAATATGAGGCATAACACAGA ATTTCTAGTAGCTGTGCATGTTTTAGAATTTGAAAGATATACCAAGTTGAAAATATTACCCATTCTACAGTACTTATGCT GTCATCAGAAAGATTAATCTTCCATCAGTTTTTCTAAAAAT

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0279500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTGTTGTCGGATGAGAAGCCTTCACATTCATGCAATCCTGGTACACTCCCACTACCAGCTGTATTGGACATAAC AGATGGATCTATGAAGCTGCTAAATACCCATCCAAACATGACACATCATCACCAGAGTCTTGGCCGTTCAATATTTTTGA AACGTTCGCGGCATTATTATGGCCACCAATATTCTCGACGAAACTCTGCTAACCATGCCAGTGCATCTTCTTCTCGTGGA AAGGGAGCTTCATTTGATGACAAGCTTTCTTTCAAGTTGGCTCCCCAACCCAACACACAGCCAAGACAACATACAGAATA CAGAGAAAAGACAGTTTCTAGGCCAGAGAGAATCCGTTCAAGTTCCTTAGCGATGGATGCAGTATCACCAGATGCAATGA AGACGATTTGTGGGATTTGTGAGAAGCCATTGAGGCGCAAATTTAATTTTCTTGGAAATTCTGTGTCTTGCAGTGAGCTT TCAGTTGTGGCAGTTTTAGTATGCGGTCATGTTTATCATGCAGAGTGTCTGGAGCACGAAACTCTGATTGAAGAACTGCG TGATCCGCCATGTCCTATGTGTGCATGTTCACTCTTGCATGCTAATGACTCTAAAGGGCATGAATAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0279500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELLSDEKPSHSCNPGTLPLPAVLDITDGSMKLLNTHPNMTHHHQSLGRSIFLKRSRHYYGHQYSRRNSANHASASSSRG KGASFDDKLSFKLAPQPNTQPRQHTEYREKTVSRPERIRSSSLAMDAVSPDAMKTICGICEKPLRRKFNFLGNSVSCSEL SVVAVLVCGHVYHAECLEHETLIEELRDPPCPMCACSLLHANDSKGHE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	20	20	-	–
PANTHER	PTHR31150 View details on PTHR31150 Search for proteins/transripts with this domain View external data on PTHR31150	2	197	196	3.9E-68	–
PANTHER	PTHR31150:SF6 View details on PTHR31150:SF6 Search for proteins/transripts with this domain View external data on PTHR31150:SF6	2	197	196	3.9E-68	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	64	116	53	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	64	83	20	-	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	118	198	81	4.6E-7	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	136	199	64	2.97E-8	–
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	137	194	58	9.922	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	137	194	58	9.3E-4	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0279500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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