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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0280700 |
| Transcript ID | LotjaGi4g1v0280700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT1G72275.1 LOW protein: nuclease-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A1J7HDU9|A0A1J7HDU9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0280700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65175853..65180053) extracted from Lotus japonicus Gifu genome v1.2.
TGCTTTTTCACTTTCATTTTCAATTTCCACCACTTTAACCATTCTCATCACACCGTCAAGTTCCGGAATGGTTGCCGCCG CAAAGCGCAAGGCAAAGAAGAAGAAGAAGCCGCAGCAGCCCCAAACTCTGAACCAATCAAACCCTCAAAACCTGGTTGAT CTAATCTCCAGAGTCACACACACTGCACATTCCTTCCTCTCTCACAACGATCTCGCTCTTCTCCCTTCCCAATCTCTCAC CCTCGAATCCCTCATCGCTTCCACCTCTCACTCTCTCTCTAGAATCCTCTCTCTCCTCCCCAAACCCCTCCACCACCCTC CTCCCCTCCCTCCGCCGCAACGCGACAGCTGGTTCCGCCGCTTCCTCCTCGCCCCGGACTCCCGATGGGTCGACGCGTTT CGCATGTCAAAGCCCTCCTTCCTCCGCCTTGTCAATCTCCTCACTCCCTCCCTCGCCTCCGCGTTCCCCCAAATCGCCCC TGATTGCGCCCTAGCCGCCGCAATTTTCCGATTGGCCCACGGCGCCGGGTACAATGCGGTTTCACGGCGGTTCGGGATTA CGCAGCCCGAGGCCTGCCGCGCCTTCTTTGCCGTGTGCAAGGCGGTTACTGAGAGCCTGGGGCATCTCTTCGAGCTTCGC ACGGATTCTGAGAGGGTGGTGGTGGGTTTCGGTTGGAGTTCACTTCCCAACTGTTTTGGGGTTCTGGGGTTGGCTAGGTT TGGGATTGATGGCGAGTTTTTCGGTAACAATGGGAGCTTGATTGTTCAAGCATTGGTGGATTCTGAAGGGAGGTTCTTAG ATGTTTCAGCTGGGTGGCCTGGTAGTATGAAACCTGAAACCATTTTGCATCAGAGTAGGCTTTATCTTGGGGTAGAGGAA TCGAAGGAGTTGTTGCGAGGGCCGTCGTATAAGCTCAGCGACGGTCGGTTGATTCCTCAGTATGTTCTGGGAGATTCTTG TTTCCCATTGTTGCCTTGGCTGTTAACTCCATATAACAGGGTGAATGAGGAAGATAGTTTTGGTTCAGCTGAAAGGGCAT TTAACGGTGCTCATAGTCGCGCGATGGAGTTGGTTGGCGATGCGTTTGAGAGGCTTCGGGCTCGGTGGCAGCTTCTGTCA GCTTCAAGGAGATGGAAACAAGAGTGTGCTGAGTATTTACCTGTTGTGATTGTTACTGGTAGTTTGTTGCATAATTTTCT TGTTAAGTGTAACGAGCCTATGCCGGATAAAGGCGTGAATTGCGCGGAAAAGGAAGCGGATTTTGTTGATTTTGATGGTG TGGTGGATAAGAATGCACTGAGGATAAGGGATGCGCTTGCTTTGCATTTGAGTCGGGCGAACATGAGAAGATGAATGCTG TGGAATCCGGTGCGAATCTTCCTCTGTTTACATAACTAATGGATGATCTACTTGTTTGATTAGTGAACATGTTTGGGAAG TCTTTGTTACATGGAGCTTTTGGTACGAATCATTCAGTTTTTTTCTAAAACTGGCTAAGCTTCTAGTTAAGGAGATTAGT AGCAAGATGTGTAAATTATCTTTTTTAATGGTGAAAGTGTTTGTACTTTTATTATTCATTAACAAAAGTTAAGTGATTGA AGGATTCACATGGCTAAAGTTCATGAATGGAAAGAAAATCTGTGATAACAAAAATTATCTGCCTCTAGTACTGATGAGTT AAAATACTACTATAAGTAGCTATGCACATGATTTTTGCACATGATCCCTTGTACTTTCATTGCTACACAGCGCCTCAAGG AACACTGATTTCAAAAGGCATTTTACCCAGACAACTGGTAGTGGATCCAGAATGATTTTACTGGAAAGATATAAGATTTT CAACAACAGTGTCAAGTGTTGTCTCATCATGTCTGTCTCCTTGTAAAGTCATTACCTTCTCAAAAGGAGAATTCTAAAAA AAACTGTTATCACCAAGATCTTAAGTGCTGCCAGCCTGCCACTTAGTGCATTGTTTCTTAGAAGGAGCATCACTGTTGAA GAGGTGTCCTTGAAGTCTCTTATCCTGTCCTTGCTCAAATGTATTATTCTTGCAGTTTTGACTAGAGCTGGAATAGACTC TCCCAAGTTGTTTTGAGAGGTCTATATATGCTAGTGATGTAGAGCTCATTTGGATACCTGTTAGAAGGTATGAAAACGGG AAAGTAACACATCGTTGCTACTTCAACAAAAAGTGCACCGGGGTGTATTATTCTCTTGTTTTCGTTCTTTCTAACGGGCA TCCAAATGGGCTCGTAAGCTCTACTAATCATGTCGGAATAGATCCTTCAAGTTTATTATTGGTAAGGTGAAATGATACCA AATTTGAGAAGTTTTTGAACTCCCTGAGAATCTTAAGTGCTGAAATTATTATTGCTTATGTCTAAGTCGCGGTTGGCGAT GAACTAGAAAGGTCATTTCCATCTAGACACTGGGTTGATATAAGATCATTGTCAAAGCCTTTTTTTTTTTGTCAAACGAC TAGGATTTTGAAACATGAATGTTTTACCAACTGATCTTAATACTATTTTTGTCCTTGAATAATTAAACCTTTCTTTTGAG CTTCTTTCTGCAACTTTTTTTTCGAAAAGTCCAATGAATTAATGTCACTTACACACTCATTCATCTGGGGCTAAAATATT TAGAATGTTCCCAAGTTACAAAGAATGAGATGTAATTAGAATTTTCAGACTTAATCTAGCCACTATAGGTTAAATTTTAT ATTACAAACATTAACACTTGGGGTAAGATGGCCCAAGAAACCAAAAATTATGGGAAGCAAGAATATTTTTAAGGCAGCCG GAATGACAGGTATCCTCACAAGAAGATTTAACCCCAACAATCTGTACATATCTGAGTAGACAGCAGGCGCATCATGCTGA AGATGCATGTGAATTTGGATTCCCTTATGTAAGGAATTCAAGCAGACAGGAAATTTAAGTCATTTGATTGAACGGCACAC ATTTTAAGCTTATTTCTGTTGTTCGATCTTGATGAAATATATGAGCCGGATTTTGATTGAACGGATCAAATTCCTTGATT GTGTGAATGTAGGATGACCCGTTTGGCCTCGGCTGGGAACCAAAATCTGCATATCACACCCTCGCTTTAATTTCTGAGTG GTGAAGATGGATGCTTCTGAATGTGTCCCATCATAATTGAAGTTTAGATGATGACAAATTACTGACACAATTCATACAGC AAGATATCAAACTTCCAAAGCCAACACCTGATGACTTATTTTCTCTTCTCTGTATCACTCTCACAAACTCGCTTGCACTT AAGTTTCCATCACGGTTAGCATCAAACACATGAAATATTATGTCAACCACTTTATCTGTAACACAGATGCCACATACCTG CATTAAATATAACATGATACCATAAGATGTTTTTACTGAATTAAAATTAGTGAATAGCTTACTTCTGCACATTTATTTTA TAGCATATGGATATATTATTAGTACCTGAGATGCTGCTCTCTGAAAATCATTCTTTGTCAACACCCCATTAATTTTTCCA TAACTGAATAAGGCCAGAGAGAAGGATTGCAACTTCTTCCGCAGTTCTGCAAAGGCTTGAAATTCCTCATATGTAATTCT TATATCTCTTAGGTGCTGGTCACTGCTTAATTCTTCAACTCTATCTAACAGTTTGTTTATGTGATTGATGTCTGCAGATG CAACCAGGGACAGGGCAAAATCTTTGGCTGAAATGGTCCCTTTTTTATTGTAATCATAATGGGAAAACTCTAATCTCAAG ATCTGCAAATTAAAACATTATCTTGTCACCTAAATGTTGTTGATCATAGAAGGATGTGCTGCAAAATCATTAGATTGGGA GGACATACCTCATCATGCAAGTGTCTTAAGAACTCAACAAATCTTCCATGTTGCAAGCAAGCATTTCCATCTTTGCCAAA AAAATACTCCAAGAGACCCCCATTTTCTATTGAAGATTTCACACCTAGGCGCCGTCCATCTCTGTGGTTAGCTCCTTGTC TGTTCTGAGATCGCATCAACGCCATCACTTTCTTGAATTCTTGCTTGTCTATTTCCCCGTTATTGTCGATATCAAACATT TTAAAAGCCACTGAAAAGCTTGACTCTGGGATGCTGAGGAGTGTTACAAAAAAGATGTACCTGGTGTCAAGAAAGAGGAG GTTATATTATTTAACATTACATAGCCCTTGAGCTCTGAACA
CDS sequence (LotjaGi4g1v0280700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCCGCCGCAAAGCGCAAGGCAAAGAAGAAGAAGAAGCCGCAGCAGCCCCAAACTCTGAACCAATCAAACCCTCA AAACCTGGTTGATCTAATCTCCAGAGTCACACACACTGCACATTCCTTCCTCTCTCACAACGATCTCGCTCTTCTCCCTT CCCAATCTCTCACCCTCGAATCCCTCATCGCTTCCACCTCTCACTCTCTCTCTAGAATCCTCTCTCTCCTCCCCAAACCC CTCCACCACCCTCCTCCCCTCCCTCCGCCGCAACGCGACAGCTGGTTCCGCCGCTTCCTCCTCGCCCCGGACTCCCGATG GGTCGACGCGTTTCGCATGTCAAAGCCCTCCTTCCTCCGCCTTGTCAATCTCCTCACTCCCTCCCTCGCCTCCGCGTTCC CCCAAATCGCCCCTGATTGCGCCCTAGCCGCCGCAATTTTCCGATTGGCCCACGGCGCCGGGTACAATGCGGTTTCACGG CGGTTCGGGATTACGCAGCCCGAGGCCTGCCGCGCCTTCTTTGCCGTGTGCAAGGCGGTTACTGAGAGCCTGGGGCATCT CTTCGAGCTTCGCACGGATTCTGAGAGGGTGGTGGTGGGTTTCGGTTGGAGTTCACTTCCCAACTGTTTTGGGGTTCTGG GGTTGGCTAGGTTTGGGATTGATGGCGAGTTTTTCGGTAACAATGGGAGCTTGATTGTTCAAGCATTGGTGGATTCTGAA GGGAGGTTCTTAGATGTTTCAGCTGGGTGGCCTGGTAGTATGAAACCTGAAACCATTTTGCATCAGAGTAGGCTTTATCT TGGGGTAGAGGAATCGAAGGAGTTGTTGCGAGGGCCGTCGTATAAGCTCAGCGACGGTCGGTTGATTCCTCAGTATGTTC TGGGAGATTCTTGTTTCCCATTGTTGCCTTGGCTGTTAACTCCATATAACAGGGTGAATGAGGAAGATAGTTTTGGTTCA GCTGAAAGGGCATTTAACGGTGCTCATAGTCGCGCGATGGAGTTGGTTGGCGATGCGTTTGAGAGGCTTCGGGCTCGGTG GCAGCTTCTGTCAGCTTCAAGGAGATGGAAACAAGAGTGTGCTGAGTATTTACCTGTTGTGATTGTTACTGGTAGTTTGT TGCATAATTTTCTTGTTAAGTGTAACGAGCCTATGCCGGATAAAGGCGTGAATTGCGCGGAAAAGGAAGCGGATTTTGTT GATTTTGATGGTGTGGTGGATAAGAATGCACTGAGGATAAGGGATGCGCTTGCTTTGCATTTGAGTCGGGCGAACATGAG AAGATGA
Protein sequence (LotjaGi4g1v0280700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAAAKRKAKKKKKPQQPQTLNQSNPQNLVDLISRVTHTAHSFLSHNDLALLPSQSLTLESLIASTSHSLSRILSLLPKP LHHPPPLPPPQRDSWFRRFLLAPDSRWVDAFRMSKPSFLRLVNLLTPSLASAFPQIAPDCALAAAIFRLAHGAGYNAVSR RFGITQPEACRAFFAVCKAVTESLGHLFELRTDSERVVVGFGWSSLPNCFGVLGLARFGIDGEFFGNNGSLIVQALVDSE GRFLDVSAGWPGSMKPETILHQSRLYLGVEESKELLRGPSYKLSDGRLIPQYVLGDSCFPLLPWLLTPYNRVNEEDSFGS AERAFNGAHSRAMELVGDAFERLRARWQLLSASRRWKQECAEYLPVVIVTGSLLHNFLVKCNEPMPDKGVNCAEKEADFV DFDGVVDKNALRIRDALALHLSRANMRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 55 | 427 | 373 | 1.0E-102 | – | |
| PANTHER | 55 | 427 | 373 | 1.0E-102 | – | |
| Pfam | 230 | 376 | 147 | 4.8E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0280700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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