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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0281000 |
| Transcript ID | LotjaGi4g1v0281000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G80530.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|G7JGM2|G7JGM2_MEDTR Nodulin-like/MFS transporter; Found in the gene: LotjaGi4g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65193149..65197374) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAAGAAATATAGTTATCTACAAACCATCTAGAGTGTAGATCTTGTCGGTAGTATCACTAAGTTGATATTTTCAAAA ATAGTCTAAATCAGAATCATATTTATATAATACTAATCAACAGATTTAACAGTGACTTGAGATATCTGAATTGCAAATGT TCAAGTCCACAAATTAAAAGTACACCCGCCTCTGACACCAACCACTCGCAAATGCAAATTTCCATTCTTCCTCTTCAAAC TTCATCCTTCAGTTTCCATTACTCTGCACTTTGTAGCACCTCACACAACACAACAAAACCGCCACAATCACACAGAAGCT AAACCAAACTAAGCTAAAAGCTCCATGGTGTTGAAAGTGAAGGGAGGAACAAGGCCACCATGGGTGGGACTTGGAGTTTC TGTGTGGGTTCAAATTGCTGTTGGAGTTGCCTACACTTTTCCACTCTACTCTCCTTCCTTCAAATCTGTTCTGGGTTTCA ACCAGAGCCAGGTTGCACTCCTTGGTGTTGCCAATGATGTTGGTGAGAATGTTGGTCTTCTTCCTGGGATTGCCTCCAAC AAGCTCCCACCTTGGCTCATGCTTTCCATTGGCTGTCTCTGCTCTTTCATCGGTTTTGGTCTCATCTGGCTCTCTATCAC CCAAACACTCTCCCTTCCTTTCTTCTTGGTATGTCTTACTTTACTTTTTGTAGTTTTATCACCAATCACTTTGATCTGGG TTTCATGAAGTTTGGATCTTTTTTAGATTTCTGGTTAATTACTTTGGTTTAATCTGATCTGTTAGTTTTTGGGTTTTTAA GAATTTCTCAAAGACAAATTATATTTAACTTTACCTTTACTTTATCTGGAAAGTTGAAGGGGACAACTGGGAGGAGTTGT GAATAAGCCATAGTATCAAATAATCAAACCTTTCTGAAATGGATATTCCCTTTCCTTTTTCTATTATTCCTTAAGTTCAT AATCTTCATTTCGTCATATTACATCATGGTTTGGTCAAGCTTATTTTTACTCGACCATCAACGGTGTAGATCAACTGGTA CAAGGTTATTCTAGCTTAAGTAGAGGTTTTGGTTTCGAGTCTCTGTGGATGCAGCTGTGTTATATAGTATATACTTGATA GGGAGAACTTTGCCGCTCATAGAGGTCCTACCCGACTCGAACAAAATCGCATCAGTAGATGATACATGTAGTTTAAACTT TAAACTAAAAAAAAAACTTATTGTTACTTGGAATCAATTATAGCACTTAAGAGCTACTTAACATAAGCTTCTCTTTTGGC TTCAGAATCAATTTTAGAAGGATTTCCAAATTCATCTAATAATTACTATAAAGAGTAAATTGTTTTCATCTCTTCTTGGT CCTTTACCAGGATATCAATTTTCAACTCACAAGTATATGAAATTCATGTAAAATGTATAATGGTTCTGTATTGTATTGCT AACACTGAGAAGAGTTTCCCTCATGCACATTTTCCTTTTAGCATATGAACCAGTTTAGATTTCAAATCTGTGTTGCTGAT AGAATACAACTCTACTGAGTGGATCTAACTGTCATCTATTTCAATCTTATTGCAGCTATGGATAGCACTTGTTATTGCTA ACAACAGTTGTGCATGGTTAACCACTGCTGTTCTTGTAACCAACATGAGAAATTTCCCTGTCACTAGAGGCACCGTCGCG GGAATCCTGAAAGGTTATGGGGGGATCGCCGCTGCAATTTTCACTGAAATTTACAGGGTGGTTCTTAAAAACTCTCCTAG CAATTTCCTCTTGTTCCTTACCGTCGGTATTCCTGTTGTATGCTTCAGTGTGATGTTTTTTGTTCGACCTTGTACTCCGG CTTCTGCTGAAAATTCTGCAGAAAAAGGGCATTTTCTTTTTATCCAAGTTTCAAGTGTGTTCTTGGCTGTGTATCTACTT GCAAGAACAATACTTGACTACACTCTCAACATAAGTGATGCAGTGTCATATGTTCTAGTGGCTGTGATGATTCTCATTCT TATGGCTCCATTGGCTATTCCTGTAAAGATGACACTGTATCCCAGAAAAGCCACTGACTCAGAATCAGAAAAATCTGAGC AAACAGTTGAATCTTCAGAATTTCTGGTTCAAGAAGGCAAAGAAGATAATACAAAACCCCTCTTGCCATCTTCATCAGCC GGCACTCTTGAAAATTATTATGATACTGATGGCTCGTCCGATGTGGCTATGCTTCTTGCTGAAGGTGAGGGAGCAGTAGT TCCAGTGAGGAGGAGAAGGCCGAGACGAGGAGAAGATTTTACATTTGCTGAGGCTCTAGTAAAGGCCGATTTCTGGCTAC TATTTTTTGTGTATTTTGTTGGTATTGGAACTGGGATCACTGTTGTTAATAATCTGGCTCAAATAGGCACTGCACAAGGT GTTGAAGATACCACTATCCTGCTTTCGCTTTTCAGCTTTTTCAACTTTGTGGGGAGGCTTGGTGGAGGAGTTGTTTCTGA ACATTTTGTCAAGTAAGTAACCATTTCACTCTCGTGCTCATATCAGTTAAAATCTGAAGAGGACAATGTATATATGTTTG TGCATGTCTGGAAACCCTTCTACACTAGATTAAGCTATAATCATTTCTGTTAAGAAGTTTCCCTGAGTAGTTTTTTGGTT CCAATATTGATTCTGATGAAAGAGAAATCATTTCAAACATGTGAGTAGAATATCATATATCCCCTCATTTCAAAATTGAT TCAAGCTACATGTGAAAAGTGGTTGGATTTCCAAACATGCTAGTAACCTTTTCATGTAACTAGATGCTAGTTTTGACAAG CACACTGTAACAATTACTTCTACACTTATCTACCTTTGCAAAATAAAAGTAGAGCAAGTGCTTTGAAGTGCATGTGTTTC TTTTTTTACTATCATAGATTGAAATGAATGATGTAGCACCATTATGTTTTCCATTTGCAGGACAAAAACAATTCCGCGGA CATTTTGGATGACATGCACACAGATAACCATGATCATCATATACCTTCTGTTTGCCTATGCGATCAAGGGAACACTTTAC CCTGCAATTGCATTTCTTGGTACCTGCTTCGGCGTGCAATTCTCCATACTGATCCCCACTGTCTCGGAGCTTTTTGGTTT GAAGCACTTTGGTTTATTTTTCAACTTCATGTGTTTGGCGAATCCACTCGGAGCACTCCTTTTCTCATTTCTGCTAGCTG GGCGTGTGTACGATAATGAGGTGGCGAGGCAGCTTGCTCTAGGACTCATTGATTCAGGTGTTTCATGTGTTGGTGCAGAT TGTTTTAAGCTCACATTTTTTGTTCTGGCTGGTGTGAGTGCTGCTGGTGCCTTCTGCAGCATTATCTTGACTATGAGAAT TAGGCCTGTTTACCAAATGCTTTATGCTGGTGGTTCTTTCAAGCTACCACAAACTTCAGGGCACTAAAATGTAGTGGAGT TGAATAAGGGAATTAAGCAGAACAGTACTTCTCAGCTGCTATTCTAGACAGATCTATTAAGCTGCTGTTTCCCTGTCTGC CAGTACTGGGAGGGACAAGAAATTTTGGTTTCCACACGTTTTCACTCATTGTACTTGTTTGGTATGATAAAGTTCAAAAT TTAGCTATTTAACCTGGAAAATGCTTGTTTTAGTATGCATATGAGGTTGTATTATGACATTGAGGACTGATAAATGAGAT GGTTTGAAGGGTCTGAAACGTGATCTGTATACAAATGGATGGAATTCGAAGGGAATTAAATCTATCAGATACTTAGGATG ATCACATACAGCAATATGTGATGATGATAATGATTAGAATTTGGGAGGCCTAACTCAACCCAAACGGTAGCTCCAAAAGT TGAGGATTGTCTTTCCATATATAAGGGTCATCTTGGACATATCTCTAATCAATGTTGGCATCTCAACAATAATGATACAA TTAGTGAGCTTCATTTATGATCTTAGTTTTTTGTTTTGTTTTTGTGAGTGTATTAGCTATTATTAAATGTGACACTTATT GCATAAATTTGCTGAAAATCCCCTGTAAGAACAACAATGTGTATACATATCAGAGCGGAGAGGAACACACGAAGGTTTTG GTCACACAGCTCGGTCAAATTGCATACGTCTACGACTATAGATCAACTATAATTCCGTTTATGAATTCGTTCTGAATACA ATAATTGTGACTTCAGTGTTACAAGCATATATAAGGATACTAATAAATCCAGATTACAATAATGCC
CDS sequence (LotjaGi4g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGAAAGTGAAGGGAGGAACAAGGCCACCATGGGTGGGACTTGGAGTTTCTGTGTGGGTTCAAATTGCTGTTGG AGTTGCCTACACTTTTCCACTCTACTCTCCTTCCTTCAAATCTGTTCTGGGTTTCAACCAGAGCCAGGTTGCACTCCTTG GTGTTGCCAATGATGTTGGTGAGAATGTTGGTCTTCTTCCTGGGATTGCCTCCAACAAGCTCCCACCTTGGCTCATGCTT TCCATTGGCTGTCTCTGCTCTTTCATCGGTTTTGGTCTCATCTGGCTCTCTATCACCCAAACACTCTCCCTTCCTTTCTT CTTGCTATGGATAGCACTTGTTATTGCTAACAACAGTTGTGCATGGTTAACCACTGCTGTTCTTGTAACCAACATGAGAA ATTTCCCTGTCACTAGAGGCACCGTCGCGGGAATCCTGAAAGGTTATGGGGGGATCGCCGCTGCAATTTTCACTGAAATT TACAGGGTGGTTCTTAAAAACTCTCCTAGCAATTTCCTCTTGTTCCTTACCGTCGGTATTCCTGTTGTATGCTTCAGTGT GATGTTTTTTGTTCGACCTTGTACTCCGGCTTCTGCTGAAAATTCTGCAGAAAAAGGGCATTTTCTTTTTATCCAAGTTT CAAGTGTGTTCTTGGCTGTGTATCTACTTGCAAGAACAATACTTGACTACACTCTCAACATAAGTGATGCAGTGTCATAT GTTCTAGTGGCTGTGATGATTCTCATTCTTATGGCTCCATTGGCTATTCCTGTAAAGATGACACTGTATCCCAGAAAAGC CACTGACTCAGAATCAGAAAAATCTGAGCAAACAGTTGAATCTTCAGAATTTCTGGTTCAAGAAGGCAAAGAAGATAATA CAAAACCCCTCTTGCCATCTTCATCAGCCGGCACTCTTGAAAATTATTATGATACTGATGGCTCGTCCGATGTGGCTATG CTTCTTGCTGAAGGTGAGGGAGCAGTAGTTCCAGTGAGGAGGAGAAGGCCGAGACGAGGAGAAGATTTTACATTTGCTGA GGCTCTAGTAAAGGCCGATTTCTGGCTACTATTTTTTGTGTATTTTGTTGGTATTGGAACTGGGATCACTGTTGTTAATA ATCTGGCTCAAATAGGCACTGCACAAGGTGTTGAAGATACCACTATCCTGCTTTCGCTTTTCAGCTTTTTCAACTTTGTG GGGAGGCTTGGTGGAGGAGTTGTTTCTGAACATTTTGTCAAGACAAAAACAATTCCGCGGACATTTTGGATGACATGCAC ACAGATAACCATGATCATCATATACCTTCTGTTTGCCTATGCGATCAAGGGAACACTTTACCCTGCAATTGCATTTCTTG GTACCTGCTTCGGCGTGCAATTCTCCATACTGATCCCCACTGTCTCGGAGCTTTTTGGTTTGAAGCACTTTGGTTTATTT TTCAACTTCATGTGTTTGGCGAATCCACTCGGAGCACTCCTTTTCTCATTTCTGCTAGCTGGGCGTGTGTACGATAATGA GGTGGCGAGGCAGCTTGCTCTAGGACTCATTGATTCAGGTGTTTCATGTGTTGGTGCAGATTGTTTTAAGCTCACATTTT TTGTTCTGGCTGGTGTGAGTGCTGCTGGTGCCTTCTGCAGCATTATCTTGACTATGAGAATTAGGCCTGTTTACCAAATG CTTTATGCTGGTGGTTCTTTCAAGCTACCACAAACTTCAGGGCACTAA
Protein sequence (LotjaGi4g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLKVKGGTRPPWVGLGVSVWVQIAVGVAYTFPLYSPSFKSVLGFNQSQVALLGVANDVGENVGLLPGIASNKLPPWLML SIGCLCSFIGFGLIWLSITQTLSLPFFLLWIALVIANNSCAWLTTAVLVTNMRNFPVTRGTVAGILKGYGGIAAAIFTEI YRVVLKNSPSNFLLFLTVGIPVVCFSVMFFVRPCTPASAENSAEKGHFLFIQVSSVFLAVYLLARTILDYTLNISDAVSY VLVAVMILILMAPLAIPVKMTLYPRKATDSESEKSEQTVESSEFLVQEGKEDNTKPLLPSSSAGTLENYYDTDGSSDVAM LLAEGEGAVVPVRRRRPRRGEDFTFAEALVKADFWLLFFVYFVGIGTGITVVNNLAQIGTAQGVEDTTILLSLFSFFNFV GRLGGGVVSEHFVKTKTIPRTFWMTCTQITMIIIYLLFAYAIKGTLYPAIAFLGTCFGVQFSILIPTVSELFGLKHFGLF FNFMCLANPLGALLFSFLLAGRVYDNEVARQLALGLIDSGVSCVGADCFKLTFFVLAGVSAAGAFCSIILTMRIRPVYQM LYAGGSFKLPQTSGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 573 | 571 | 4.0E-286 | – | |
| PANTHER | 3 | 573 | 571 | 4.0E-286 | – | |
| CDD | 11 | 544 | 534 | 3.57428E-97 | – | |
| Pfam | 12 | 258 | 247 | 7.4E-80 | ||
| Phobius | 12 | 32 | 21 | - | – | |
| Gene3D | 13 | 203 | 191 | 3.1E-7 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| SUPERFAMILY | 19 | 196 | 178 | 7.06E-10 | ||
| Phobius | 33 | 76 | 44 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 77 | 98 | 22 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| Phobius | 104 | 129 | 26 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 161 | 171 | 11 | - | – | |
| TMHMM | 172 | 191 | 20 | - | – | |
| Phobius | 172 | 194 | 23 | - | – | |
| Phobius | 195 | 205 | 11 | - | – | |
| Phobius | 206 | 225 | 20 | - | – | |
| TMHMM | 206 | 224 | 19 | - | – | |
| Phobius | 226 | 236 | 11 | - | – | |
| SUPERFAMILY | 227 | 556 | 330 | 2.62E-18 | ||
| Phobius | 237 | 256 | 20 | - | – | |
| TMHMM | 237 | 256 | 20 | - | – | |
| Phobius | 257 | 353 | 97 | - | – | |
| MobiDBLite | 269 | 302 | 34 | - | – | |
| Gene3D | 342 | 555 | 214 | 5.7E-9 | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 354 | 376 | 23 | - | – | |
| Phobius | 377 | 387 | 11 | - | – | |
| Phobius | 388 | 409 | 22 | - | – | |
| TMHMM | 389 | 406 | 18 | - | – | |
| Phobius | 410 | 420 | 11 | - | – | |
| Phobius | 421 | 440 | 20 | - | – | |
| TMHMM | 421 | 439 | 19 | - | – | |
| Phobius | 441 | 445 | 5 | - | – | |
| Phobius | 446 | 465 | 20 | - | – | |
| TMHMM | 446 | 468 | 23 | - | – | |
| Phobius | 466 | 476 | 11 | - | – | |
| Phobius | 477 | 500 | 24 | - | – | |
| TMHMM | 478 | 500 | 23 | - | – | |
| Phobius | 501 | 530 | 30 | - | – | |
| Phobius | 531 | 552 | 22 | - | – | |
| TMHMM | 532 | 554 | 23 | - | – | |
| Phobius | 553 | 575 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0281000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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