Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0282100 |
| Transcript ID | LotjaGi4g1v0282100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT2G25620.1 DNA-binding protein phosphatase 1; Swiss-Prot: sp|Q69QZ0|P2C27_ORYSJ Probable protein phosphatase 2C 27; TrEMBL-Plants: tr|I3S2T9|I3S2T9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0282100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65335891..65337941) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAAAGCATATGTGAGGATGCAGAAACTACCGAGAAAAAACATAACATGATGAATTTTGTCCCTACTCTTCGGTCTGG AGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGGAT ATAATGTGCTCGGCGAGGAAGCCATTTCCTTCTATGGTGTAAGCAATCTTATTGACATAGCATGTCTAGATCAGCTTCTC TTAATCAATTCTAAGACTTGTGAAAAGCTTCCTCGCGGAATTCTCGGAATTGATCCTGAGTTCCTGACTTTAGAATCAAC TGTAGAAGAGTTTCCAAACATGCACTAAGCTAATTACCGGTTGTCAGAAATTTCATGGCTCAGAAGTTTCCTATCCTACA AATTTAGCAAGCAAATGAACTCGTAGTTAGATTTTATTCAACTAGACAATGACCAGATAACATTATATGATGCTATGAAT CAAAGTTAGGAGATATAAGATCATGTCTTCCATAATATTTTTCTTGTTTCAATTTTTCCAATGGTGAGATTGTAGTTTTT CTTTTTCATCATTGCCATACTCCTCTTCCCCTTTTAGACCTGAAAAGGTGTGCGTAAAACAAATTATACAAGCTAGAAAA ATTCACTCCGGGCAAAAAGAGGATAAACATCTATTAGCCATCTTTTGTAGGGCGATATACATCTTTTCAATCAGGATTTG ACATGTAAGGGCAAATGGATTTCTATGCAGGTATTTGATGGACATGGAGGGAAGAGTGCGGCACAATTTGTCCGTGATCA TCTGCCGAGGGTGATTGTTGAGGATGCAGACTTCCCTTTGGAACTTGAGAAGGTGGTGACAAAGTCATTTTTGGAGACTG ATGCAGAGTTTGCTAAGACATGCTCTAGTGAGTCTTCGGGTACAACTGCACTCACTGCAATTATATTGGGAAGGTTAGCA TTCATCTCCATAGTTCTTATTGCGTGCTTGGATCAGCGTTTGTCACAATAGATTTTGGTAAAATTGATTATACTAAAAAT GAGCTGGAAGTGAAGTGAATTACGTTTAGATACATTTATGAAAAAGTGAGTTTTGTTGGATAATGTTGTGAAATTGAGTT GTAAAATCTCACAATTGATTATGTTCAACACAGAAACTACTAGCTCTAGCTTCTACTAGAGTTGATGGCTCTCAAATATC AATATTTTCATCCATAATTGATTTTACTCTACTAAAACTGATTTTGCAGTTTCCCAACGGAAAACCAAACACACTTCTAG GCCTTTATAGCCACATGATAGTGTTCCAACTTCCCAGCTCATTTGTGAAAGGCATACTACTTTAAAGTCAGATGCAGTGT CTAACATCACAAGATCTTTACTTTCAGGATTTATTCTTGTTCACTTATAATATCAAATAATAGGACCCTGTTGAACTGTT TTGAATAGACATTTGATGCTGCAAAATAAATGTCATTTGTCCTGTTCAGGTCTTTACTTGTAGCCAACGCCGGAGACTGC CGCGCTGTTCTATCCCGGTCTGGAGCGGTCATGGAAATGTCCAAGGATCACAGGCCCTTGTGCATGAAAGAAAGGACGCG GGTCGAGTCTCTAGGAGGATTCATTGATGACGGCTACCTGAATGGTCAGTTAGGTGTCACTCGTGCTCTAGGCGACTGGC ATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGAGGACCCTTGAGTGCCGAGCCTGAACTTAAACTGGTGACACTGACC AAGGAAGATGAATTCCTGATAATCGGCAGTGATGGAATCTGGGACGTTTTTCGCAGCCAAAATGCCGTTGATTTTGCTCG AAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGCAAGGAAATTATAGGGGAAGCAATGAAGAGAGGAGCAACAG ACAACTTGACAGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCACCTGTGGTTGTTGAAAGGCCTAGATTCAGGAGA AGTATATCTGCTGAGGGACTGCAGAATCTTAAATGTCTGCTAGAAGGATAG
CDS sequence (LotjaGi4g1v0282100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACAT ATGCATTGGAGACTTGGCAAAGAAATTTGGATATAATGTGCTCGGCGAGGAAGCCATTTCCTTCTATGGTGTATTTGATG GACATGGAGGGAAGAGTGCGGCACAATTTGTCCGTGATCATCTGCCGAGGGTGATTGTTGAGGATGCAGACTTCCCTTTG GAACTTGAGAAGGTGGTGACAAAGTCATTTTTGGAGACTGATGCAGAGTTTGCTAAGACATGCTCTAGTGAGTCTTCGGG TACAACTGCACTCACTGCAATTATATTGGGAAGGTCTTTACTTGTAGCCAACGCCGGAGACTGCCGCGCTGTTCTATCCC GGTCTGGAGCGGTCATGGAAATGTCCAAGGATCACAGGCCCTTGTGCATGAAAGAAAGGACGCGGGTCGAGTCTCTAGGA GGATTCATTGATGACGGCTACCTGAATGGTCAGTTAGGTGTCACTCGTGCTCTAGGCGACTGGCATCTTGAAGGAATGAA GGAAATGAGTGGAAGAGGAGGACCCTTGAGTGCCGAGCCTGAACTTAAACTGGTGACACTGACCAAGGAAGATGAATTCC TGATAATCGGCAGTGATGGAATCTGGGACGTTTTTCGCAGCCAAAATGCCGTTGATTTTGCTCGAAGGAGGCTTCAAGAG CACAATGATGTGAGACAGTGTTGCAAGGAAATTATAGGGGAAGCAATGAAGAGAGGAGCAACAGACAACTTGACAGTTGT GATGGTGTGTTTTCACTCAGATCCACCACCACCTGTGGTTGTTGAAAGGCCTAGATTCAGGAGAAGTATATCTGCTGAGG GACTGCAGAATCTTAAATGTCTGCTAGAAGGATAG
Protein sequence (LotjaGi4g1v0282100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVLGEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPL ELEKVVTKSFLETDAEFAKTCSSESSGTTALTAIILGRSLLVANAGDCRAVLSRSGAVMEMSKDHRPLCMKERTRVESLG GFIDDGYLNGQLGVTRALGDWHLEGMKEMSGRGGPLSAEPELKLVTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQE HNDVRQCCKEIIGEAMKRGATDNLTVVMVCFHSDPPPPVVVERPRFRRSISAEGLQNLKCLLEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 272 | 269 | 3.53E-74 | ||
| PANTHER | 5 | 286 | 282 | 2.9E-165 | – | |
| SMART | 5 | 269 | 265 | 4.8E-78 | ||
| PANTHER | 5 | 286 | 282 | 2.9E-165 | ||
| Gene3D | 5 | 275 | 271 | 8.6E-82 | ||
| ProSiteProfiles | 9 | 271 | 263 | 48.468 | ||
| CDD | 9 | 271 | 263 | 1.85507E-84 | ||
| Pfam | 21 | 263 | 243 | 2.8E-67 | ||
| ProSitePatterns | 48 | 56 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi4g1v0282100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…