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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0286800 |
| Transcript ID | LotjaGi4g1v0286800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT2G24260.1 LJRHL1-like 1; Swiss-Prot: sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66; TrEMBL-Plants: tr|G7JGS7|G7JGS7_MEDTR BHLH transcription factor; Found in the gene: LotjaGi4g1v0286800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65897245..65900761) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAAGTAAACACAGCCTCAACATGTAAAAACATGTTAATCTAACAGAAGCCCTACACTTGGCACTAGCAATCCAGCT GTGACAACCTCCCAGAGAAGATCATATTTGGCCTCTTGTGAAGAGACACGATAAGCGCAAGAATGCAAAATAGAAAAGGA AAAAAAAAAACTTAAAATAGTAAAACCTTCCTCACCTTTATATATATCCAAACCAAAGTATTCAACATCTCTATCCTCTA GCTCTCTAACTAAGATTCAAATTGAATTACATTAAATTAAACCCCCACTATCTATCCCTCTCTTCTCTAACTTCCTCACC CCGCACTTTCTCATCTCAATCTCATGCAGCCGCCACCAGAAATGCAGCAAGACCTTAACTCCCTCTTCGACTCTCCTCAG ATCCAAATCAATCATCATGATCTCAACAACTTTCAACCCACTCCTCACGACGATTTCCTCAAGCAAATGCTCTCCACCAC CAATCCCTGGTCCCTCGACGCCGCCGACGGTAATGTGGCGGCTGCTTTCCCCTACGACGCTGAACACGCTAACCTCGCCT CCAAGTTCCGTAACCACCAGATCAGTGACAAAGCCCTCATGCTCCTCATGTCAACCGCTGCTGATTCTGGACTCCTCCAC ATGCCGCCGTCGCTGGGCGGCGCAGGAGGATTTGAGTCCACCCCGAACGACGGCTTCAACGGCTTCACTGGATCGATTCA GGAACAGTCCAACCAGACTCACCATTTTCAACATCCTCAGGTTCCATTTTCTATTTCATAAATTGAAGTGTACGTTATTG TGATCGATCTTCATGATGTGTGTTCATTTTGGTTTCTGAATTTTGAACTGCAGGGGCAGAGTTTTGGAGCTACGCCGAAC CAGGCTCCGGCGGCTGGGAACCCGGGTCCGCCGAAGCAGAGGGTGAGGGCTAGGAGAGGTCAAGCTACCGACCCGCACAG CATCGCAGAGAGGGTATGTCAGTTTATCTCTCACTTTCTTAGCTTCATTTAATTCTTTCAACATGTTTGGTTGCCGAGAA AATTGAGTCCGGGAATTTCAGTGGTCGTTTTTTCCTTGTGAGAATACTTCCAAAAACAACATTAAAACGTTATGTTTTTC AGAGAAAATGGGATCGTCAGTGCCTGACAGAATAACAACCGCATTTAATTTGGACTGAGGATTCTGCATTTAAAAAGGAA AAATATCCCTAATAGGACAGAATAAATGGTTTGTTTTCTTTATTTTGCTTTGATGTTATTGTACTATTGTGTATGGCAGT TACGGAGGGAAAGGATCGCAGAGAGGATGAAGGCTTTGCAGGAACTGGTTCCCAATGCCAACAAGGTAAACCCTGTTTAA CATTAATTAAATTAAAATCGATCCCCAGTTAAGTTCTCTTTTGTTGATTAATTAATAGGAGTCATGCTTAACTTAGTGAT ACTTATTAATTACTATAAGTTTCAAAACTGATATTGAAATTAATCCATTGTTCATAATCATAACTTACAAGAGCACAGCA CTTCCAATTGAGTAGTTGAATTCATTCCGTGCGTTTAGATTTTCATTAACCATTGCATAAACATACTTAGGGAGTTGAAG TATGTAGCTGGGATTTGCATAGTTTTTGTATGTGAAATTTGAGGGACAATTTGGTCATATACTATTATAGTAATTATACT GCTGCATAATGTTATGGGTCAATCCTTGTTGAAATTGAAATATTTGTTTGGTCTATGGAGTGACAGACAGACAAGGCCTC CATGTTGGATGAGATCATCGATTATGTGAAGTTCCTACAAGTCCAAGTCAAGGTCAGATTCCCCTCCGTTTCATCAACAT TCTTTGGGAAACTAAAATATACAAATATTCTCCATTAAAATGTGAATATGTAAAAATGTGTGTGACATAAATAATTTTGA TATGATTTTTCTTAATTTGATTTCATATTTCTTAAGTATTAAGTTATTTATTTCAATCCTGAATTCTTTATCTACATAGT AGTAGTGCTTCAAATTCTAATCTGAAATAATCGACATTTAAATGGTGATAGGTATTGAGCATGAGCAGATTGGGCGGAGC ATCGGCCGTCGCTCCACTTGTCGCTGATATGTCCTCCGAGGTACTAAATAACCCTACATTTTATCAATTTCTTTCCATAC ATATAAATCTCCCAAAGTTTTATAGGAAAATAGAAATTGATGATGATATTGGAAAAAAAAACAGAACCATGAGGATTTCC ATAATAAGAAAGACTAATATCAATGTTAAAAAAAGGAATATAACCTAGCTAGCAGTCTCAAAGCAGCATCGATGATCCAT GAAATGCTGTCGGAGGAGGAAGTGATGAGTCATCTCACACCTAGTTTGTTTTCTTGTTTATCTGTTGATGGCTTTGGCTT GTAGTAGTACACTACTCCAATCAATCAATCAATCAGTTTCCGAAATTCTCAATCACCACAAAACGACAATCCAAAAGCAG CACGCGTGGTCACTTTTTCTCAGATTCCTCTTTTTCTCTCTCTCACTCACTGACGTGTTTGTTGTGTTTGCAGGCAGGAG GAGGCGACTGTAACGGCACTAGGTCCCACCCCCGGAACTCCCAGAAGATGACAGCTTCATCCTCCAACGACAGCCTCACC GTGACGGAGCAGCAGGTGGCCAAGCTCATGGACGAAGACATGGGCTCCGCCATGCAGTACCTCCAGGGAAAAGGTCTCTG CCTCATGCCTATTTCCCTCGCCACCGCAGTCTCCGCCGCCACGTGTCACGCCAGGAACCCTTTGATGAACGCGGGCCACA ACATCAACAACAACCCTAGCCCGGTAATTGGATCCAACGGTGATAATGGGCCCTCTTCTCCCGGCATGTCCGCGAACAGC ATTGTCAAAGATGCAGCGTCCGTTGGTTGACTTTTGCTTTGTTTTTTTTGTTTTTTTTTTTTTGAAATGTCTTTTGCTTT GTTTGTTGGACGTGAAGAAGTGCGTGCTGAAGAAACGCAGAAAATGACGTGGTGGTGGAATTTCTAAAGTCTAGGAAAAT GAAACGTCACTATCATCGGGTGGACCTACAATGACGACGTCGTATTTGCCTTGACTTTGATAGATGCTATTTCTAGTTTC AACTTTGAGTTAATTAATTAATCGCAACTCTGTCAACTTTCTATTCCTTGATCCGATCTTTTTCTATAGTATTTGTTTTT TCCTCCATATTTTTGGCAATGGTGTTTTTTATTAGTATCCTCTTACACTTATGTTACTTTTATTTTCCTATTTTTCGCTT CACAATTTCTAATCAATATAGTATCTCGATGACAACGAAAAAAAAATATGAATAATGCGAAAAAAAAAATTACGAAAAAG GGGTGAAAAAAATGGAATTTACAGGAATGGTGTGTTTTTGGGCGTGGCAAGGAGGTGGGATCCGCTCCACCTAACGCGAA TCTCAAATGTGTCATTCGCCCCACATGACACGAATGCAAGCCATTTCTTTCCGTCAGAGATTCCATTCATTCCCAAG
CDS sequence (LotjaGi4g1v0286800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCCGCCACCAGAAATGCAGCAAGACCTTAACTCCCTCTTCGACTCTCCTCAGATCCAAATCAATCATCATGATCT CAACAACTTTCAACCCACTCCTCACGACGATTTCCTCAAGCAAATGCTCTCCACCACCAATCCCTGGTCCCTCGACGCCG CCGACGGTAATGTGGCGGCTGCTTTCCCCTACGACGCTGAACACGCTAACCTCGCCTCCAAGTTCCGTAACCACCAGATC AGTGACAAAGCCCTCATGCTCCTCATGTCAACCGCTGCTGATTCTGGACTCCTCCACATGCCGCCGTCGCTGGGCGGCGC AGGAGGATTTGAGTCCACCCCGAACGACGGCTTCAACGGCTTCACTGGATCGATTCAGGAACAGTCCAACCAGACTCACC ATTTTCAACATCCTCAGGGGCAGAGTTTTGGAGCTACGCCGAACCAGGCTCCGGCGGCTGGGAACCCGGGTCCGCCGAAG CAGAGGGTGAGGGCTAGGAGAGGTCAAGCTACCGACCCGCACAGCATCGCAGAGAGGTTACGGAGGGAAAGGATCGCAGA GAGGATGAAGGCTTTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCCATGTTGGATGAGATCATCGATT ATGTGAAGTTCCTACAAGTCCAAGTCAAGGTATTGAGCATGAGCAGATTGGGCGGAGCATCGGCCGTCGCTCCACTTGTC GCTGATATGTCCTCCGAGGCAGGAGGAGGCGACTGTAACGGCACTAGGTCCCACCCCCGGAACTCCCAGAAGATGACAGC TTCATCCTCCAACGACAGCCTCACCGTGACGGAGCAGCAGGTGGCCAAGCTCATGGACGAAGACATGGGCTCCGCCATGC AGTACCTCCAGGGAAAAGGTCTCTGCCTCATGCCTATTTCCCTCGCCACCGCAGTCTCCGCCGCCACGTGTCACGCCAGG AACCCTTTGATGAACGCGGGCCACAACATCAACAACAACCCTAGCCCGGTAATTGGATCCAACGGTGATAATGGGCCCTC TTCTCCCGGCATGTCCGCGAACAGCATTGTCAAAGATGCAGCGTCCGTTGGTTGA
Protein sequence (LotjaGi4g1v0286800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPPPEMQQDLNSLFDSPQIQINHHDLNNFQPTPHDDFLKQMLSTTNPWSLDAADGNVAAAFPYDAEHANLASKFRNHQI SDKALMLLMSTAADSGLLHMPPSLGGAGGFESTPNDGFNGFTGSIQEQSNQTHHFQHPQGQSFGATPNQAPAAGNPGPPK QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGASAVAPLV ADMSSEAGGGDCNGTRSHPRNSQKMTASSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHAR NPLMNAGHNINNNPSPVIGSNGDNGPSSPGMSANSIVKDAASVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 335 | 309 | 1.0E-106 | – | |
| PANTHER | 27 | 335 | 309 | 1.0E-106 | – | |
| MobiDBLite | 112 | 173 | 62 | - | – | |
| MobiDBLite | 115 | 149 | 35 | - | – | |
| Gene3D | 160 | 220 | 61 | 7.7E-15 | ||
| CDD | 167 | 223 | 57 | 5.62466E-14 | ||
| SUPERFAMILY | 167 | 229 | 63 | 4.06E-17 | ||
| ProSiteProfiles | 169 | 218 | 50 | 17.39 | ||
| Pfam | 174 | 219 | 46 | 9.2E-10 | ||
| SMART | 175 | 224 | 50 | 1.2E-13 | ||
| MobiDBLite | 248 | 275 | 28 | - | – | |
| MobiDBLite | 255 | 275 | 21 | - | – | |
| MobiDBLite | 334 | 355 | 22 | - | – | |
| MobiDBLite | 334 | 364 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0286800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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