Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287600 |
| Transcript ID | LotjaGi4g1v0287600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A151T389|A0A151T389_CAJCA TMV resistance protein N; Found in the gene: LotjaGi4g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66002994..66009614) extracted from Lotus japonicus Gifu genome v1.2.
AATACTCAATAGCACTGAAGTCAAAACTGATCAGACACGCACCACGGAAGGCACACACTTGTTCTTCTTGTTAATTGAAA AACCAGATTAGTTTGATTCCAATGGCCGGGAGCTCTTCTTCTTCTGCTGCTACTATGGCTCATCCTCCTCCTCCTCCTCC TACAAAGTATGATGTGTTTTTGAGCTTCCGAGGGGAAGACACGCGCAAGAACTTCATGAGTCATCTTTATGCTGGACTTG ACAGGAAAAAAATCAATGCCTTCATAGATGACAGATCACTAGAGACAGGTGATGAGATCTCACCTGAACTCTGCAAAGCA ATTGAAGCATCAATGATTTACGTCATCATTTTCTCCAAAGACTATGCTTCTTCCAAGTGGTGTTTGGATGAACTTGTGAA GATTATGGAATGCAAGAAGAAATATGAAAGGGTTGTGATACCTATTTTCTACTACGTGGAACCAGCAACTGTTAGGCATC AGAAAGAGACTTATGCAGATGCGGTTGTGAAGCATCAAAACCGGCTAGTACCAAAGGAAGTAATACAGAGATGGAAGGAA GCTCTAACCGAAGCTGCTGGAATCTCTGGCTGGGATTCAAACGCCGCCAGGTGACTACTTTTTTAGTTAATTCCACCGTT AGTCTGCATGTGTTTTTCTTAATCATCTGATCTAATCAATTTATAAATGTTTCGTTTTTAAAAATGTTGTGGTCTTTATT TTACAAATCAAAAGCAACAAATATGACACTACTATGTTTCCCTACTGTTGCTACGTAATGACCCCAAATTAATGTTGTTC CTTTCATATGTTCCAGAACAGAATTCGACTTTGTTGATGATATTGTAGAAGATATTTTAAAAAAATTGGATCGTTTTATC TCAAGTTATAGTGATAATAAAGGAATGGTTGGAATTGATGAGCATATTTCACAAATCCAGTCCTTCTCACAACTTGAGCC AGAAGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACACTGGCCCGGGCACTCACTACAAAAA ACTTGTCATATAGTGACTGCAGAAAGCCGTAGGTAAAGGGTAAAAAACCGTCGCTATTGTTCGAAAAACTTTTACCGACG GAAAAAATTTTCGTGGTTTTTATTTCGTTGTACCCACGGTTTTGGTTCCGTCGGTATAGCTTATAGTGACGGTAATCCTG CCTTAAGTTTAGCTCAACATGATATACCTACGGTTTTGTTTCCATCGGTATAGGTATTCATGACAATTTACGGTTGCACT ATACCCACGGAAATATTGCCGACGCTGTAACATTTTTGTGACGGAGAGTCGTCGTTGGTAGTACTTTAACTTATACCAAC GACAATATTTCTGTCAGTATAGGTTTTAATTGTTTTTTTTTAATAGCTACGAATTTAATATCATTGCTATTGGATTTAAT GACAGTAGTAAATACTAACAAATGAAGATTTTAATTACACATTATAAATTACAATTGTCAACATTACTCGATTATTATGG GTTCTAAGAACTTTTTTACTAATATAAGTTAAATATCCCTTAATTGTTTTAAAGGATAAAAGCACCTATACACATTCAGC TCACATAAAAAAGTGATTTTGCAAAACAAGGGTCGTTTGCGTTTTCAGAAGAAGAAGGCTTTTGTGTTCTCAATGTCCTT TTGCGTTTCAGAGAGAGTAAAGGCTTTTTTTCTCCTATAATTTTAGTCTTTTATGATTATTTTATGATAAAAATAACCTT TGCAAAAAAATAAGCCCTTAATTGTGAAATTTTTGGCGGGCAAATTTTAGCTACGGCATACAAAAGCGTTGGTTTATAAT ACTTATAGCCACGGTAAGTCAAATTCCGTTGGTATACGATATCTATTCTCACCCTATTTATATCTATCACTATATCCTAT AGCGACGAAATTATATCTGTAGATATATGTAATCTATACCCACAGATTTTATACTCGTCCCTAAAACATATAGTAACAAA ATAAAATATTGGTTGGTATATGATGCTTTTACCCATGGTTGAAGTTTTGTCACTAAATGAATTAGTTACAGTAATAATCA TCCGTAGGTATATCCTACCTATAGCCACGGTTAATAAGGAGTCTGTTGGTAAATAACACTTATACATACGCTTTTTAATG CTGTCACTAAAGCTGTCCGTTGGTATATGGCAATTTTTTTGTAGTGACTGTATGACAAACATGGGAACCAATTCAGTTCC ACGTTGGTTGAAAATGCTCAACAAGAAATAGACACAAATGGAACATACAGTCTACGTCAAAAGTACTTATCAAAGCTTGG TTTTTCAGATGAAAGGGTCAAACGGGCAAAGGTTCTTCTTATTCTTGATGACGTGAAAACTTCAAGTCAAATTCAAGAAT TGATTGGAGGGCATGGAAACTTTGGCCAGGGAAGTAGAATCATTGTGACTAGTAGAGACCTGCAGGTGCTTAAGAATGTT GAAGCGGATGAAATATATCAAGTCAACGAGATGAGTTACCAAGACTCTCTACGACTCTTCACATTGAGGGCCTTTAAACC AAACACTCCCGTGGAAGGTTATGCAGACTTGGTAGAAGAGGTATTAAAATATGCTAAAGGGGTTCCATTAGCTCTCCAAG TCTTAGGCTCGCTGCTTTATGATAAAAAAAGGGAAGTATGGGAAAGTCTACTACAAAAGCTGCGAAAACTTCCCAATCGT CAAATTATCGATGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAAGAGAAGGACATATTTCTTGACATTGCTTGCTT CTATGTAGGCCGGGTTGAGGATGCAGTAGTGGATTTCATAGATGCTTGTGGTTTCTCTGCTAAAGTTGGAATGGATGTTC TCAAAGATAGGTGCCTTATATCTATTTGGGATTATCGAGTCGTGGTGCATGATCTAATACAGGAAATGGGAAAAGATATT GTTCATCAACAATGTGCCAATGATCCTGGAAAACGTAGTCGTTTATGGGACTATGAAGATATTTACAATGTTTTAAAAAA TAACAAGGTATATTCTCACGCATCTCAACAACTCACATAGTCTCATGGATTTACTTCTCACACACTACAAAGTACTTAGC GGTTATTAAATTTCTTGCAACTAACTGCACATTCTTTCATGTTTATTTATCTATAATTCCTTGCTTTTACTTTTAGGGCA CGGATGCAATCCAATGTATATTCCTCGACATGAGCACGAAAACTGTTGTTCAACTACATCCTGAGACTTTTAAAAGCATG CCTAATCTGAGAATGTTTTGTTTGGATAGTCGTGATATTCAACCAAAAGTGACCCTTTCTGCATTTCTTGAAAGTCTTCC AGATGGTTTAAAATTGCTTCATTGGGTTGGGTTTCCTCAAAGATCCTTGCCGCTTTGTCCTGAAAATCTTGTTGAACTTA AAATGCGTCATAGCAAGCTTGAACAACTTTGGGAGGATGATCAGGTAGTTCAAATTTTATGTTGTGTTCCTTTATATTTT AGGTATGAATTGCAGTATAAATTGAGGAACTAACAACATACTAAGAAAACACAAACTTGTCTGAGACATGTGAAATCACA CCGTCTTAAGAATGATTTATTTACTTAGAGAAAAATCCCCTTAGAACAAGACGAGAATTCCCTTTATAAACCAGTAAAGC CATCAAATATGAAGGGAAAAATGAAAAATAAGTGATATGCTAAGTGATGTGATAGAAAATGCAGATAGATGAAAAGAAAA ATGAGTAAAATGAGATTGAGAAGAAAATGAGTGTGTATATATTAAAACTACTTACAAATATCATAAGCCATACATAGCTT AGCCTTTACGAGCAAAATTACCTAGATAGCAAAGCTTCTAGATAATAAATAATTTTTTTTCATATATATACAAATAATTT ATTTTCGATTGAATATATATAATAGATAAAATGACATGAAATAAAATAAAGAGAGAAAATAGAGGGAGTAATTACCAAGG ATAGTTTAGGAATTAAACATGAGTAATTTACAAAGTCAGTTAAAAGTCAATAAAAGTATTATTGAGAATTTAATTTTGCA CACTTTATAAAGCTTAAGGAGTTAAATACACATTTTTAAAACTTCAGGGACTATTTTGCTTTTTTAACTAGCTTATAACA TGAATATAGGGTTAAGTTTACCTGCTTTTTTTTTTTCTCCTAATCATTTACTACTTTTTACATCAGGAATTACCGAATTT GAAAAGGCTTGATCTTGGGGGTTCTAAGCAGTTGGTTCGAATACCAGACCTTTCAAAGTTCCCAAATATTGAAGATATAG TTCTTAGTGGTTGTGCAAGCTTAATTGAAGTTTACTCATCAAGTTTCCTCAGCAAACTCAAATGTTTAAAGTTAAGGAGG TGTGTTGAGCTTACAAGTTTAAATGTTCCTAGCAATATTCTATCGAGATCTTCTGGACTAGTGGAGCTCTCTAACTGTCG CAAGCTAAAAACGTTGTCAATCAACAGAACCAAGGTGGTTGAATCGCATTTTGATGGATCTTCCTATGAGTCTTGTTGTT TGATGCTCCATAATTGTGAATCGCTTACAAGCCTTCGAATCGACCTTTGTCGGTCAAAATTGCTGCAAAAACTTTGTCTG AGTGGTTGCTCAAATTTACAAACTTTTCCTGAAATTGAGGACACAGTTGAAAACTTAGTCGTGCTTCTCTTAGACGAAAT AGCTATACAAGAACTACCTTCATCCTTGCATCGCTTTGTGGGGCTTCAAGAATTGAGCTTGCGTAATTGCTCAAGGCTTG AGATTATTCCTTGTTCCATTGGAAGACTCACCAAACTCCGCAGCTTAGACCTTACCGGTTGTGAATCACTTGAAACATTT CCAAGTAGCATTTTCAAATTAAAGTTGACAGAACTCGATTTGGATGGTTGCTCAAAGCTAAAGACATTCCCAAAAATCTT GGAGCCTGCAGAAAGTTTTGCTGACATTAACTTACCATATACAGCAATTAAAGAACTGCCTTCATCTTTGGACTTCTTGG TGGGTCTTCAAACCTTGTGTCTGTATGGGTGTCGTAATCTGGAGTCACTTCCAAACAGCATTTGCAATCTAAAGCTTCTA TCTAAGCTTGACTGTTCAGGTTGTCGCAACTTAACAGAAATCCCAAATGACATTGGCCGCTTGTCATCATTAAGGAACTT GCAACTGCATCGTACCAAAATTGTGAACTTCCCAGAGAGCATTGGTCATCTTTCAAGCTTGGAATCACTTAATGCAAGTT ATACCGGAATTGTGAACCTTCCAGAGAGTATTGCTCATCTTTCAAGCTTGAACTCACTTAATGTAAGTTATTCCGAAATT GTGAACCTTCCAGAGAGCATGGGTCATCTTTCAAGCTTGAAATCACTTAATGTAAGTTATACTGGAGTTGTGAACCTTCC AGAGAGTATTGCTCATCTTTCAACCTTGAAATCACTTAATGTCAGTGGTTGCAGAAAGCTTGAATGTATCCCAAAACTTC CACCATTTCTGAAATGGTTATTGGCATTTGATTGCCCATCCATTACAAGAGTGATTTCAAATTCAACGTTCAAACACCCT TCAGATTCCAAAGAAGGTACCTTCCAATTTCATTTCACCAGTAATGAAGATCAGGATCCAAGTGCTTGTAGTGATGTTGT GGCCGATGCAAGGCTTAAGGTCATAGAGGATGCATATAGATTTGTGTACTATTGCTTTCCAGGGAGTGCAGTTCCATATT GGTTCCCTTATCGATGCGAGGGAGATTCAGTAACTGTGGATAAAGATTCTCTAAATTGGTGCAATGATAACAGGCTCATC GGTTTTGCTATGTGTTTCGTTTTGCAACATAAAAATACAGGATCTGGTTCTTTAAAATGCAGCATAATAGTTAAATCTGA TGGGTGCACATTCACCCTTCCCCAAGAAGATCAGCTAAGAGACTCTTTCTCTTGCAGTGCTGCACAAGTGGGACAGAGAG ATCACACATTCCTATGGAAATATTACTTAACGGACTCTGTCGACGAAGGGATCTTTCACGCCTCCAGCTTCACTTTTAAG ATCCCTATTCCGAGCTATCATGAACCAAGTTATGAGGTGAAAGAGTGTGGAATATGCCCCCTTTATACCTCCATCATATC AGAGAAGCGAAAACCCCCCGAAAACCCGTTAAGAAGAAGAAGAAGGTCGTCTCCCTTCGTCGTTGTTCAGATCTGAAGCC AAACTTCGCATTCCTCCTTCGCTGTTCACATCTGAAGTCAATACTATAAAACCTTGGCTGATCAAAGAAAAAGAAATAAT AATAATTACTATAAAACGGCTAAGGTGCTTCTATCTTCGGTTACAGAGAATACACAATACTAGGCCTCTGTATAAGATGA AACAATAATGGAACCCCTGGTTGAGGGAAAATTTGGACTGCTATGCTATTCTAATACTAGTACTACACAAGTATTTACAA ACTATGTCTATCTCCCGTCAAAAGAAGCACACTAAGAGCAGCTGGAATATGTCTCTGACTTGATTACCCGAGTATTGTAA GAGCCACATAGTCCACACTTGTGATACAAACTGACTTGATAGACAAGAAATTTACAACAAC
CDS sequence (LotjaGi4g1v0287600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGGAGCTCTTCTTCTTCTGCTGCTACTATGGCTCATCCTCCTCCTCCTCCTCCTACAAAGTATGATGTGTTTTT GAGCTTCCGAGGGGAAGACACGCGCAAGAACTTCATGAGTCATCTTTATGCTGGACTTGACAGGAAAAAAATCAATGCCT TCATAGATGACAGATCACTAGAGACAGGTGATGAGATCTCACCTGAACTCTGCAAAGCAATTGAAGCATCAATGATTTAC GTCATCATTTTCTCCAAAGACTATGCTTCTTCCAAGTGGTGTTTGGATGAACTTGTGAAGATTATGGAATGCAAGAAGAA ATATGAAAGGGTTGTGATACCTATTTTCTACTACGTGGAACCAGCAACTGTTAGGCATCAGAAAGAGACTTATGCAGATG CGGTTGTGAAGCATCAAAACCGGCTAGTACCAAAGGAAGTAATACAGAGATGGAAGGAAGCTCTAACCGAAGCTGCTGGA ATCTCTGGCTGGGATTCAAACGCCGCCAGGGCACGGATGCAATCCAATGTATATTCCTCGACATGA
Protein sequence (LotjaGi4g1v0287600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSSSSSAATMAHPPPPPPTKYDVFLSFRGEDTRKNFMSHLYAGLDRKKINAFIDDRSLETGDEISPELCKAIEASMIY VIIFSKDYASSKWCLDELVKIMECKKKYERVVIPIFYYVEPATVRHQKETYADAVVKHQNRLVPKEVIQRWKEALTEAAG ISGWDSNAARARMQSNVYSST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SUPERFAMILY | 14 | 164 | 151 | 3.66E-43 | ||
| PANTHER | 19 | 170 | 152 | 1.2E-71 | – | |
| PANTHER | 19 | 170 | 152 | 1.2E-71 | – | |
| Gene3D | 19 | 181 | 163 | 6.6E-65 | ||
| ProSiteProfiles | 21 | 161 | 141 | 28.831 | ||
| SMART | 22 | 161 | 140 | 1.4E-47 | ||
| Pfam | 22 | 168 | 147 | 2.1E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0287600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…