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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288000 |
| Transcript ID | LotjaGi4g1v0288000.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNAse I-like superfamily protein; TAIR: AT4G30900.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q5UQW5|YL388_MIMIV Uncharacterized protein L388; TrEMBL-Plants: tr|A0A1J7I0C6|A0A1J7I0C6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0288000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66038884..66042656) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAG AAGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGTTTTCACTTTTTCTTCT TCGTGTATTATATTTCTCTGGATGCTCCTCCAATGCCTGTGTTCCTTTGTGGATCTTAATTTTCATCTGGGGTTGCTAAA ATGATTGCTTTGCTAGCTTTTTTTTGGGATTGGGGTTTTGATGGATCATTCTGGATCCTATTTGGTGAAGCTGGCTTTCA ATAAGCGATTGCTTGTTTTGTTTACATGCGTTTTTTTGGGGTGTGGGGTGTTGATTGTTTGATTTGAAGATTTTTGCTTT GCTTGTCTATCATGGTGTTCTTAGCTTGCTTGTCCACCCTTCCCTTCTCTTGTTCTCTCACCTTGGATTGTTTGATCTGG GTGCTTCTGTTTTTTCCTTACAAAAATTGATGGCATTTTACCAGCTTGTTCATTGATTGTTCTGATTCACTTTTATTTAT CCTTTACACTGTTTTGATTTGCATCTGGATTCAGGAGTCAAAGCTCAATTGGATTTTCTCCAGCAGGGTTTGCCAGGTAA CAATTTTTTTGAGTATGTGGTTCTAGGTTCAGAAAGGATTGGTTTATAGTTCTCAAATTCATTACATGTTTGGTTGGTCA CAAGCATATTTGTAACTTATTCGATAATGTATGTGCCGCAAGCCATAGTCATGGCCTTGGTAAAGGATTTATATCATACG GTATTGGTTATGAAGAGAAATATGTCTAGAAGGTGCTTTTTATTTTCACATAGTACTTTAGAGTTAAGGTCGGCTCAAAT ATTTAGTAATACTAATACTCGCTATGTATATGTTCTTATGTAAAGAGTGTGTAGTTCATTCAATAATGTCAAGAAGGTTA GGCAAAATAATATTCTAACTAGAATGAGAAACTAGAGTATAAATAGGCAGATTCTCTCCCTGCTGTCAAATTTATATACA AAAGGAACTTGAAAAGAAGTTTTATGGACTTTATTGAGATTTCACTTATTACAAAACGATCAAAATATCTTAAATGTCAG TTTGTTCGGCCAATAGTTGTGTTGGAGTGGTTTGAGCAAGCATGCCTATGTATTTGTTTTGGGAAATGATACCATTTATC TCTAGTAACTATGCTTTCTTCATTATTTAGTCACTTTAATTAGCTTGTTTTATGCTCATGTTGAAAAGTTTTAGCTCAAA TTACTGGCTTCCTTTGTTGACGAACATATGAATTGATGTTCAAGGCTGACTTTAAAAGTGCTAAAAAAGTGATACTTGGA GTCCTAAGCAAGATATGACAACACTCATAGAAATTTGGGTCAGGTAGCTCTATCCCAAAAGCCAAATAAAGGTGAGGATT GCTCAGGCCAGACATCTCAAGCTAGAATTGCTGACGCGATATTGTCGCGAATGCCCTTTACACCTGCTATGGATACCTTC GAGGCTAGATTCACTTTCATTGAATTCTCGTGGAATAGTCACATGCTAGATTGACCTCATTAATTGTTCTTTTTTGGAAT AACCATCGGTTAGGTTGACTCTCAAAATCATGGGCAGTCCAATAACGAATCTAGGATAGGCTTTGTTACCATCTTGAGAA TTTGGGCCAGGCCTAACTTAACTCTAAAAATCTAGTTCACAGGTGAGGACTTCCCAACTCTTTATGAGTACTTATTTGGC CTATAGTCAAATATGGCACCTTAACACCCCCCTCACACCCAAGGCTAGCTCTAGACTAGATTGACTTTATTAATTTTTTT CCGGAGGAACTGTGAGTCTGGTTCAGTTAGGCTTTGTCCAAATTACCAATATGGTATCAGAGCCTACTTAGATTCATTAT TAGGCCACCTTGACTCGCATTGAATTAACCATTCTTTTAAGGATAAAGGACTAGACCATACGTCTTGTCTATGACGGACC TTAACGTTATCATGAAACTACGTCTTCAAGCACCAATTCTACAATTTGTACTTATAAGCTCCTTATGGCAACTAGAAACT AGCTATAATGAGGAAAACAAATGCTCTTTACTAGAATGATACCTGTGATCCTTGTCTTCCCACCACATGAAAATATTGTT TGTTTAGGTGAGCTTGCAAGATCAAATACAACTCAGATAGTTTTTTGTATAGAAGTATAAAGTGCTCATAGAAAATGTCT TTTTATTAAATTTAAAAAATCAGTGGCAGCGCTTGTTGCTCAATGTAAAAAAAGTGTTCTATATTATGTAAAGATGTCAG TTTCTATCTTGTTACTAGAAAGGGTGCTGTTTTCATGGACTTGCAGGAGGCACCAGCCCATGTTCCCATGAGATATCGTG AATACTTCACTTTAATACTTTTTTCTCTCTTAAAATAAGTGGACTATTGTCAAGCAATTTCAGTTTAACCCTTTTTGTGC TTGATATTACTCCATTTCTAAACGGATTCTTCTACTTTGATAAAAATAAATACTAGGTTATGATCAGTTCGGCATATCTC GAAAAGGGCCACAAGATAGTTCTGACGAGCATTGCACTATATTCTATGATAAGGAAAAGGTATGAGGTTATTTCAGAATT ATCTGTTATAATTTCTTATTTAACTAGTAGGACTGTAGGAGAACAAAGTGGTTCACAGTTTTTTATTTTTTATTTTTTAT TTTTTATTTTACTTTAATGAAGGTAGAGCTTCTGGAAGGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACCTGGAA GCATGTCATGGGGTTCTGAAGTTCCTTGCATTGCAACATGGGCTATATCCTTATGATTTAGAAAAGAAATTATAGCTTCA ATCGTTTACGAACTGTTTTTTTTTTACCTTTGCTGCACAACCTTTAAAATCATTTTTCTTTGACATGATGTCCACACATT TCAACTTAAAGGAGTTGAGCTACCAGGATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCAGTCCTCGTGCCC GTAGAAGAAGTGCTTTACTCACATGGCAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTACTGTGGAGGATTC AACACACAAAAGGAATCAACTACTGGACGCTTTCTTCTCGGAAGATCGAGGTAGTTTCTTACTACATACCTTTCCAATTA TTAGTTGTTCTCAATTATAGAATTTTTCACATTCATATTTTCCGTAGTGCGTGGTGAACATATTTTGTTATTCATTAAGT TGGATTCTGTGATGAGACTACAAGAGTAGTGTAACTTGTGTGTTTACTCTGATTGAGTGCAGAGAGCATGGTGTTGTTGG AGATATGCGGGATGCATGGCCTAGTTCTCGTGTGCGGAAAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTA CTATTTTTGGTGCTTCTACTCTGTTATTCTGAGCATGATATTACTGTTTTGATTACTGAGTGTTATCTCGTGCTGTTAGG TGAAAAACAAGGAACCCTTGAGTACCTCAAGTTGATCTTTAGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATC TTCATATTGATTGGATCTTTTTCAGAGGGAGATCTCTGATTCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGT TTTTATCCATCATCTCATTTTCCTATATTTGCTGAGTTCATGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCA AGAGGATAGCTAA
CDS sequence (LotjaGi4g1v0288000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAG AAGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGAGTCAAAGCTCAATTGG ATTTTCTCCAGCAGGGTTTGCCAGGTTATGATCAGTTCGGCATATCTCGAAAAGGGCCACAAGATAGTTCTGACGAGCAT TGCACTATATTCTATGATAAGGAAAAGGTAGAGCTTCTGGAAGGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACC TGGAAGCATGTCATGGGGAGTTGAGCTACCAGGATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCAGTCCTC GTGCCCGTAGAAGAAGTGCTTTACTCACATGGCAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTACTGTGGA GGATTCAACACACAAAAGGAATCAACTACTGGACGCTTTCTTCTCGGAAGATCGAGAGAGCATGGTGTTGTTGGAGATAT GCGGGATGCATGGCCTAGTTCTCGTGTGCGGAAAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTGAAAAAC AAGGAACCCTTGAGTACCTCAAGTTGATCTTTAGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATCTTCATATT GATTGGATCTTTTTCAGAGGGAGATCTCTGATTCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGTTTTTATCC ATCATCTCATTTTCCTATATTTGCTGAGTTCATGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCAAGAGGATA GCTAA
Protein sequence (LotjaGi4g1v0288000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSLTVMTFNLHDDQPPDSPNSWEKRRDICISVITSYSPFILCTQQGVKAQLDFLQQGLPGYDQFGISRKGPQDSSDEH CTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGVELPGFSFQIVNTNMDEFSPRARRRSALLTWQHIASLPPSLPVVYCG GFNTQKESTTGRFLLGRSREHGVVGDMRDAWPSSRVRKNVSLIRTYHGFKGEKQGTLEYLKLIFRALCLCWDRQTQDLHI DWIFFRGRSLIPVSCEVVNDNIDGFYPSSHFPIFAEFMLPRTVRMLESPVQEDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 287 | 286 | 6.3E-93 | – | |
| PANTHER | 2 | 287 | 286 | 6.3E-93 | – | |
| Gene3D | 3 | 284 | 282 | 1.1E-51 | ||
| SUPERFAMILY | 4 | 275 | 272 | 2.88E-25 | ||
| CDD | 6 | 277 | 272 | 4.40045E-92 | – | |
| Pfam | 8 | 270 | 263 | 9.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0288000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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