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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288600 |
| Transcript ID | LotjaGi4g1v0288600.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein, putative; TAIR: AT3G49400.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A9V790|LIS1_MONBE Lissencephaly-1 homolog; TrEMBL-Plants: tr|G7KFW3|G7KFW3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0288600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66083088..66091687) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAGCTAAATTATTCTTGTCGAGAATCAATTTATTTGCAGCATCCTAGGTTCGAACCCTCATCTTCTCTCTGATAAAC TAGACAGTAGACAGTTACTTACAACACAGCACACAACACACAACATGGCTTGTCCTCCGTGCCCGTTAGAACCTGCTATG CTTTTGGGTTCCCCCTCTTTTCCAAACGCCATTGCTTGGTCCGATGACAACCTCATCGCCGTCGCCTCCGGCCACCTTGT TACCATCCTGGTAGTAATTCTCTCCCTTCAACACAAATCAAATCAAACACACTTTTCACTTTGTTTTTTTCACTCTAACA AGGTTTTTGTTGTTTTTCAGAGACCAGACTTGCCTAATGGACCACGCGGCCTGATCAAAATCTCCCCACGCGAGCCCCTT CTAGTAGGGTTTGTCGAAAGAAAAGGTATTCAAAACTGAAATCACATTACTGTTTTGCTTCAATTGCTTTAAAGTAACTC TATGATCATGTGCATGCATGTGTTCTGTTTGAAATTTTAATGATTCATTCACTGAGTATTTATTCATAGACAAAGCCAAA TGCTGCTGCTGCTGATACTAAATAACAGAATAGAGAAAACAACTGAAACTAATTAACTGTTTGTGAATGTGTATTCATTC ACTGAGTATTAATGTTCTTTTTTCTACAAAATTACATGTATTTAGTTATAAATTAGTTTGATTTGAAAATCTTGAAATCT TACATTGTCAATTAGAATGATAAGAGTGCTTAAAAATGAGATAAACATGTATACAATATTATATATAAAAGGCATGAAAA TATTTATTGATTTTTTTAACACACGGTGCAAATGGAAAAAAAATTTACTCAGCGACGCCCGCAAACCCGTATTGTCTGCA TCCGCAACCGCAATTTAAAACCCTGCTCACTACTAACTGCCATCAGAATTCATGCCACTATCATGTAGTAATAAGCAACA TTTATGAGTCCTGTGTTCATGATTAAATTATGTATGTTATAACTTTTAATGTCAAATGGGAGTTTGAGATTTTTCACTTG TTGGAACTGAGTTGAGCACAGATATACTCTCTGGATGCCTCCTGTCCACATCTTTATATCGGGATGATAAGCCTGTTGTC CAGTCAATATCATGGTCTCCACTTGGAATGGCTGCAAATTCAGGGTATGAGTTTTTCCTTTCTTGATTCAGTTCATTTGA TGGTTTTTTAAGCCCCTTAAGAGTCTGGAAGCTCAATCTATTCCTAGAAGTTAACAGAGTCGTAGTTTTTTCTGGTATAT GTTAAACTTCAAGCACTATTCCGGTTGGGTAATTTGTTTTCTTTTTCCAAAGTAGTGGATCTATGTTCTGGTTCCATAGT ATTGTAGATAAAATTCACTGGAGTGCTGTGAAGTCATAGTTTGTTCATTCATGAGAAGTTAATGTTATTACTTTTTATGT ATTAGGTGCCTGATAGCTGTTTGCACAAGCGAAGGACATGTGAAGGTTTACCGTCCGCCTTTTTGTGATTTTTGTGCTGA ATGGATTGAGGTATGTGTAATAGAAGTGGTTAATCCTGCAGAATTGGATTTGATGGAATCCGTTATGTTTCTGCTCGAAA ACAGACATGATGTTGAAATTGTAAAGAGGGCTATTAGAGTATGGAGTACTATAAGTATAATGTATAGTATACATGAATGT ACTGGATCATAGCCTAAGCCATTTCTGTTATTATGTTAGAACTAGTTACAGTTACGCTTGACACCTCCTGCCTCACGTAG CATTCTCTATCTCTGTCTCCCTCTCTCTCACTCCCTCTATATATTAGAGCATGTAACTGTTCTGATTCAATTCAATGCAA TCAGTTTCTACTTTCTCTCAATCTAATGGGGGCCATATTGTTTCAGTTTCAAAACAAAAAACGTAATTCAGAACTGGTGT AATTTGTAGCATCTGTGGAGTAAAAGAAAGGCAGTGTAGAAAAACATGTAAAAAAGAATGTCATTTTAAAAGTATTTCCC ATTTATGGATTTGTTCAATATATTATAATGAAATGAAGAGTTTTTAATATTGCATGTGTACCTTGTTTCAACTATAATAT GCTATTCTTTTCTTCAGGTTTTGGATATAACTGAAATGCTGTATGAATATTTTCAATGTACGGAGTTTCGAGGTACAGGG ATTCATTCATTGGATCTTTCCGAAGTAAGTTATCTAATTCATCCATGTTCTTGATTGTTTTTTCCTTTTATAATTCTCCT TGGGGGTGAATTAGTATGGGAAAGATCATGCTCAGGATCCATTTGCTCTTTCCTTATTTATCAACTTCTGGCTCATCTGT TGGATGTCAGGAGAAAAGATATGATACACTACTAACCTGCAAAGTGCAAGCAACTGTCTTAAACAAGGGATATATATATA AAGTGTTATGAACTAGTGTTATGTTACTTACATGTAACTAATCTTATATGTATACCATATGTATACCAGCATCTGAATAT GTATTGATTATTGTGCTAAAGTTTTGTCTCTTCCTTATAACAAGTAACTTTTGCCTCTGTTTTGTTCTATGTACAATCAT TTATTGTATCTAAAGGTTTCAAGAATAGACTTATGTTGCCATCAAATAGGAGTGAGCATGGAAATTCTTTTTTTACCCCC TGAATAGATATGGAAGGATATAGATAAATGTGATGTAGTTTTTCTTATGTGTGTGTGAGACACTGCGCGTGTGTGTACTG TCATGAACCAATTATCCCAAAAGTTTAGGTTATTTGATGAAGACACATGAATGGTTTTAAACTGTATTTCTTACACACAC ACATCTACATAAAGTCAACAAAAACCCTTTGTTGTTTGTTTCTTATCTATAAAGTAACTACTTTACTTGGTGTAAAATAT GTTTAAGAGGAGTGCTAGCAACACACTCACACACACACACTCCCTATGATTGGTCTATTTACAAAATAGTCAACATATTT CTTTCACTTATTAAAATTATGTGTTGACTTCCAATCACGTTGAAGTGTGTTGGGAGTGTGTTGCTAGCATTTCTCATATG TTTAATTATGGTTAAGCTCTACTTGTACGTGAAACATTTCTGTAGAATTTTCATCCTAATATCACTATTATTTGTGTTTT TTAATTTCTAGGTTCCTAACATAAGACCATGTCTGTTGAGAAATACGTCAGATCAAACAGATTTGACATCTAAACCTAAT GGTAAAATGTCAAAGGAAATGCCTGAGAGCCAAATGCTGCCACTGATAAGTGCTGGTCAATATGCATCTCGTAGTGCAAT GCTATGTGCGCTTGTTGTATCGTGGTCTCCCTTGCTGCGTACAGCATCCGAAATTTATCCCATTGCTAATACTCCTGCTT CTGTCAGTCTACTTGCTGTTGGGTCGAAGTTTGGCACCATTTCTTTATGGAGATTTTACGAACCAGATTGCTATACTATT GAGGACAGAAAAGCCCCAACTACTGGAAAGTTTGTTGGCCTTCTTCAGGCACACAACTCATTGGTCACATCAATAAGTTG GTTGTTGTTTGCTTTTGATTCTTCAAGTCCTCAAATTATATTAGTTTCTGGAAGCTCTGATGGGAGGTGAGTTAAATATT GTAATTAAATTGTGTTACATTGTACTCTGATTTCGTTATATCTTATTAAGCTACCATACGCAGTTCTGGAGTTATGCACC TTGCTTTGTTGTTTGAGCTTTATCTATATCATTGTAATGACAAGGGGAATGCTCTCAATAAGTTTCTGAGCGATGCTTTA TCAGGGTTTAGAAGAGATATGGTTTCTCTCGCGATTTTTAAAAAATTTCATCAGTTTCTTGAGGAATATTTGGGGATTCA AGTTTGAGGAAGTTTTGTTAATGTACTCAGTGGACAGCACATAAAATTTTTTGAAGTTTTGAATGTCCAAGATGAAAATG AACTATAGGTTGCTGAGTATTTTTAATTAGGATAAAGTATTTATAGGGATTCAGGGATTCTGCTAATTATAAGTTTGTTG CTCTGAAACTTATAAGGATTGATCCTCAATTCTCTCATACTCCTGATTGGATTAACTTCGTATGATATTACTATTTACAC ATACTATCTGAGCTAAGCTGAAATATGTGTGCTTTTCAGTGTGAAGGTATGGTTAGGTGAAAATGACAAATTACTGAAGT CATCAGAAGTTGATCAAGCTTCATTCTTGTTATTGAAGGAGGTAATTCCTACTTATTTTCTGCATCTCTTTTTATTTATA TATCTTTTTTGTGAATAATTTCTTCACGCAACTTTCAATTTCTAATTAGGTTATAACTGTCAATGCTATCCCAGTTTCTG TACTTTCAGTAACTGTGCATGCTCAGTACCCTTCCAAGATGCTTTTAGCCATAGGAAAAGGTTCTGGTTCGTTTGAAATA TGGCTATGCGACGTATCTTCTCGGGTATTTGATAAGCTTGGCTCATATGATTCACATGATTGCATTGTAAGTTTATTCCC TCCCTTTTTTTGGATTAGCTGGCTTGCGGCATTTCTCTTTTGATTTCTGCATGTTTTACTTCCTTCAGATTACAGGTTTA GCCTGGGCATTTGGTGGAAGATTTCTGTACACCTGTAGCCAGGTTACTTTCTTTTCCATTTATAATTTGGCCGACTGTCT ATCCATGTACCATTAAAATTTTAATTATGTGGACATATATTCTATTATCCATAGTTCCATACCAAGTTTCTTCATCAGTT GTATCTTATTTTATATGTTCCACCAGTTCCATTCTCTATTTCCACTTCCTACTTAATCAAACATGATTGGTTAATTTTTT TATCATGAATTATGGCTGGGTCCCTGCAGTTCCATTCTTGCTAGCAATAGCATGTTCGCAGTTCAGAGTGTCTTGATCTT TCTCATCTATAATGTTATAGTGAACTGATCTTTTTAAAACGATTTACAAAATTACTGTTTCCTCCTCTGAAGCTGAAGAG CGAAAGGAAATTAAATAAGTATTTAAGCTTCCTAAAATAGATGAATTTTCTTAATATTCTAAAACATGAAATTCTGAGGT GCCTTCTGGGTTTCAACTGTCTGATTTTCATTATGCAACAAAACTTTGTTATCCAGTATAAATTCTGTTTTTCTCAAGAT TTTTAAAGCAAGGTTAGCTTATTAAAATAATCCTCGCTTGAAAGAAATGAAATATTTTCTCAATTGTATCATTTATACTC ATTTACAAAGAGAGATACAAGCTATAGAAAAGGGAATTGATCTATCCTATGAATAGTGTAATATCAAAATTGATTTACAT GATCAGAAATAAAATATGAAATGATGACACATGATAAAAAATAAAGTAGATAACAATAGTATTCACAACAACATCAAACA CCTAAAATTGTAGTGCTTCTGATGTGTATTTAAATAGATGTATTCATGATTGATGAACGTTTGCTCCTATGTTGGAAGGA TAACTTATTGCGTAGCTGGATTTTGCGCGAGAGTCGTTTAGATGAAGTATCCACCCATTCTGATTTGCCTCGTAGTAATG ATTCAATCCGCGTATGTTACTACTATCCTTCGTGACTTCTATCTTGTTTTCAGTTTCATCTTTGTTTTTCTTACTAAATC AAATATGCATTATTTCCTTGCAGCCATCAAGAGATGCATTTGATTCATGTTTTGGTGTAGCTGTGTCCCATGGAAATCTT GTCATTGCAACTGTATGATATTTTACTTTCATTTCAATCTGCATTCAAGTATTGATCCTCATATGTTATGCCCCTTTTGT TTAATACACCAAAATTGAAGTGTTTTACTGAATCCAAATAGAGTCTTTGCCCACTTCGAAAAAGCAAATGGTCTTGACCT CTTGGCTTTCTGAAAACATCAAAAGAAACTATTGCACAATCCTTCATCAGAGTCAGAGATACCTTAATTCCTTGTCAATT TCATATTAAAATTTTAATTAAAAGAATCTTAGTATACTTGAATTTGAGTCTCTGTTGTCTTTAATCTGTTGAGTGAATCA CAAATATTTATTCTCTACACTAACTTCCTATATCATCATTGCTTGTTTATTGCAGGTTCATTGCTTTGATGTTGAGAAAT TAAATCGAATGTATGAAGGAAGGTATAAACATGATTTTCAAGTGACAATTTTTTCCCCTTCCTTTATGGGTTAAGATGTA TTTTTTGGGGCAGGGAGGAGTTCAATGATAAATGTATATCAACCCAGATACCTTTTGGAAATATAATACATAATATAAAA AATTGAACTCATATCACTCCAGAACACTGTGTCATCGTTTCATTCATGTATTCAAATCCTATCTAGTGGGGAAATACTTG GTTGTTATTGTCACTTCTGGCCAAAGTAGCAAGAGAATGCCCAATTGTAGAAATCATGTATATTTACAATGGTTATGCTA TTATATCTTGAAGGTTTAGACCAGAAACTATGCTCCTTAGCTAATATTTTACTTTCCTTTTATCCCTTAACTCTTACAAA CTAGAGATTTCATGAAATAAAAAATTGACAAATGTGGAAATTTGACATTTTTCTTCAACTTTGGTCAGGATTCTGAAGGC AGCTATTGAATACTTTTGGATTGGTGGGCTACATGTGGATGTTTGGTTGAAATCTCCCTTCTCTTGCTACATTGAAAAAA GTTCCAGTTTTCTCGAGAAAAATTTAACTTATTGGGGGGCCAATATCATATGGTCTTTAAACCGATATCAATGTCTTGAT AAGCCTCTAGTTCTTTGGGATATAATTGCAGCATTGTTGGGTTTCAAGGATAACAAGCCAAAATATGTAGAGAATTTACT GATTACGTGGCTCTCATTATCATTTCTTGGATCTCATGTGGACCTTCCTCTTGAAACTGTTTTATCACGTGTCTCTTCAA GCCTGTCAAACGTTCCTTCTCGACTGCTACACTTGCTCAATATAATATGTAGACGGGTGGTGTTAGCAGAGCTGGAAGCT GATCAAATAACTGGAATAAATAGCAAAATTCGAAACTTGGAAGGGGCATGCCCTGCCACTGAAAAGAAAATTACTACGTG GATAGAAATTCTTTTAAGCAGCGAAAGAGAGCTCCGAGAAAGGCTTGTGGGTTTAAGTTTTTCCGCTTTCCAAAATGGCT TGTCCTCCCCCCCTGAAGCAACTCCTTCCCAACCTGGCTGTTGGTATCCTGTTGGACTAGCACAGATGGAAAAATGGATT GCTTTAGATCAGGAACATGTACGAGAGCAGGTGAAATTCATTGCATCAAACGTTACTCATGAGAAAAGGTACTGCTCGCA TGTATGTGTATATTTTAGATGATGTTCCTTTTTCCTATCGTGTTACTTTATAGTTATTTTATAGCTTTGTTTATGCACAA ACTTCCTTGTCCTAGAATTGAGGCTAACCAGATGACAGATGTCAATCTGAGTAATATATATTTTCCGAAAAAGGGCGGAG AACCACTATCTGATTGTGGTGGAAACTGTACATGCTGCAATTCTTTTTTCCTTGTTTGTATAACTTGATGGAGAGACAGA GTATACTCAAAATGGAACAATAGCACAGTAGAAGATTACCAATATTTGTATCATGAAACAAAACGATGTCCTTTTTTAAA GCCATATTACTCATCAACCAGTATAGTGCTGCTCCTTCCCATTCATATTAAGGATAGCTCAAGTGGTAAGAGCTGGGGAC ATAAGGGTTGGGTGGGGTGAAGGGTCCCGGGTTTGAACCCGGATGAGGGATTAATTTACTAACATTTCTAACAACTAACA TTTGCCTATCAAAAAAACATATACAGCAGTTTCTTTCTGTTTTAGTTACATATATTACCTGAACAATGAATACTCTGCCT TCCTTTTTTTCTGCTTATAATGAACAAAATTGTGGGTCCAGTCCAAGACTTAAAATATGCTAATTGCAATGTTGTGTATT TCTGCTAATAGCAGGTTTGTGACCTGTGGATACTCAGCAGTCGAGCCATGCAGTTATTGTTCAGCATCTGTTCTATTTGA GTCCCCCGAGTTTGGTTTTTGTCAAGGTGAAAATTGCAGCAGTGGCAATGTTAAACGTCACAGGTTATTGAGATGTTCTG TTTCCATGGAGATTTGCCCTAGTGCTCCCCTATGGTTTTGTGTATGTTGCCACAGGTTTGCATTTAGAGTGGCACCTGAA CCACTTTTTAGAATGTCTTCATTTTGTCTAGATCTAGAGTCTTCAACTAAATCTTCCTCTCTAGTATCGTCAAGACCATT ATGTCCCTTTTGTGGGATACTGCAACAAAGAAAACAGCCAGACTTTCTACTCTCTCCGGCACCTGTGTAAGAATATTTAG TAATTTGTTGTACTATAATGTAATTTTAAGAGGTTCTGATGCTTCTATGAATGGCTTCATCCTTCATGTATTTTAGTTTT TCCTCATCATATATGTTGTTCTATTTGTTACTGTTGTATGATAATAATTCTGATGAACTTGTACATGGTCTGGTTAGCAT GCGTAAATTGTAATTACCGGCTAAAATTTACTGGTAAGCTAATTTTAATATAGAAGAAAACTGTTTGTCAATGAACCCGC TTGGATACTGGTAAAGAAGCTCTCTTTGGAGCTTATTCAA
CDS sequence (LotjaGi4g1v0288600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTAGCCATAGGAAAAGGTTCTGGTTCGTTTGAAATATGGCTATGCGACGTATCTTCTCGGGTATTTGATAAGCT TGGCTCATATGATTCACATGATTGCATTATTACAGGTTTAGCCTGGGCATTTGGTGGAAGATTTCTGTACACCTGTAGCC AGGATAACTTATTGCGTAGCTGGATTTTGCGCGAGAGTCGTTTAGATGAAGTATCCACCCATTCTGATTTGCCTCGTAGT AATGATTCAATCCGCCCATCAAGAGATGCATTTGATTCATGTTTTGGTGTAGCTGTGTCCCATGGAAATCTTGTCATTGC AACTGTTCATTGCTTTGATGTTGAGAAATTAAATCGAATGTATGAAGGAAGGATTCTGAAGGCAGCTATTGAATACTTTT GGATTGGTGGGCTACATGTGGATGTTTGGTTGAAATCTCCCTTCTCTTGCTACATTGAAAAAAGTTCCAGTTTTCTCGAG AAAAATTTAACTTATTGGGGGGCCAATATCATATGGTCTTTAAACCGATATCAATGTCTTGATAAGCCTCTAGTTCTTTG GGATATAATTGCAGCATTGTTGGGTTTCAAGGATAACAAGCCAAAATATGTAGAGAATTTACTGATTACGTGGCTCTCAT TATCATTTCTTGGATCTCATGTGGACCTTCCTCTTGAAACTGTTTTATCACGTGTCTCTTCAAGCCTGTCAAACGTTCCT TCTCGACTGCTACACTTGCTCAATATAATATGTAGACGGGTGGTGTTAGCAGAGCTGGAAGCTGATCAAATAACTGGAAT AAATAGCAAAATTCGAAACTTGGAAGGGGCATGCCCTGCCACTGAAAAGAAAATTACTACGTGGATAGAAATTCTTTTAA GCAGCGAAAGAGAGCTCCGAGAAAGGCTTGTGGGTTTAAGTTTTTCCGCTTTCCAAAATGGCTTGTCCTCCCCCCCTGAA GCAACTCCTTCCCAACCTGGCTGTTGGTATCCTGTTGGACTAGCACAGATGGAAAAATGGATTGCTTTAGATCAGGAACA TGTACGAGAGCAGGTGAAATTCATTGCATCAAACGTTACTCATGAGAAAAGGTTTGTGACCTGTGGATACTCAGCAGTCG AGCCATGCAGTTATTGTTCAGCATCTGTTCTATTTGAGTCCCCCGAGTTTGGTTTTTGTCAAGGTGAAAATTGCAGCAGT GGCAATGTTAAACGTCACAGGTTATTGAGATGTTCTGTTTCCATGGAGATTTGCCCTAGTGCTCCCCTATGGTTTTGTGT ATGTTGCCACAGGTTTGCATTTAGAGTGGCACCTGAACCACTTTTTAGAATGTCTTCATTTTGTCTAGATCTAGAGTCTT CAACTAAATCTTCCTCTCTAGTATCGTCAAGACCATTATGTCCCTTTTGTGGGATACTGCAACAAAGAAAACAGCCAGAC TTTCTACTCTCTCCGGCACCTGTGTAA
Protein sequence (LotjaGi4g1v0288600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLAIGKGSGSFEIWLCDVSSRVFDKLGSYDSHDCIITGLAWAFGGRFLYTCSQDNLLRSWILRESRLDEVSTHSDLPRS NDSIRPSRDAFDSCFGVAVSHGNLVIATVHCFDVEKLNRMYEGRILKAAIEYFWIGGLHVDVWLKSPFSCYIEKSSSFLE KNLTYWGANIIWSLNRYQCLDKPLVLWDIIAALLGFKDNKPKYVENLLITWLSLSFLGSHVDLPLETVLSRVSSSLSNVP SRLLHLLNIICRRVVLAELEADQITGINSKIRNLEGACPATEKKITTWIEILLSSERELRERLVGLSFSAFQNGLSSPPE ATPSQPGCWYPVGLAQMEKWIALDQEHVREQVKFIASNVTHEKRFVTCGYSAVEPCSYCSASVLFESPEFGFCQGENCSS GNVKRHRLLRCSVSMEICPSAPLWFCVCCHRFAFRVAPEPLFRMSSFCLDLESSTKSSSLVSSRPLCPFCGILQQRKQPD FLLSPAPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 130 | 130 | 1.9E-8 | ||
| ProSiteProfiles | 1 | 71 | 71 | 9.784 | ||
| PANTHER | 3 | 476 | 474 | 2.7E-123 | – | |
| SUPERFAMILY | 8 | 115 | 108 | 4.03E-7 | ||
| ProSiteProfiles | 30 | 71 | 42 | 9.138 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0288600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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