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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0289100 |
| Transcript ID | LotjaGi4g1v0289100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT5G57900.1 SKP1 interacting partner 1; Swiss-Prot: sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1; TrEMBL-Plants: tr|G7JFK8|G7JFK8_MEDTR F-box SKIP1-like protein; Found in the gene: LotjaGi4g1v0289100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66141908..66144779) extracted from Lotus japonicus Gifu genome v1.2.
TACGAAATTCAAACTTATTTTTTCATCCAAACGGGATGTAAGTTACTTATTACTAATCACTTTCTATCCAAACAAAACTT TACCAAATATAACACACCAATGTGTTTGCTTGTGATTTGGTACTAATTGGATATTTAATTTGACTCGTTCATCAATCATA TAGAAGATAGAAACCATTGTTAGGCAGCACAACACGGATAAGGAACAAAGAGGAAATGGAAAACGAGGTAGAAGAAGGAA GCGATTCAGAGTGGAGCGAGTTGACTCGGGAGTGCCTCATCAACATCCTCTCTCGACTCACCGTTGACGATCTATGGCGA GGCACCATGCTTGTCTGCAAATCATGGTTCAGCGCCTTCAAGGAACCCTCTCTTCACTCTGTCTTCAACCTCGACCCCCT CTTCGACTCGCCCCGCGAGTTGCCTCGCTGGTGGTCCCCCGAATTCGAGGCCAAAATCGATTCCATGCTTCGCTCTGTTG TTCAATGGACCCATATCTTCCTCACCCAGATCCGTATTCGTCACTGCTCTGATCGCTCCCTCGCTTTGGTCGCCGAAAGG TACAAAATTTCTCAAAAATTCAAATACCCAATTGTCTCTTTTGTTTATGTTTGCATATGCATGATTAGGGTTTCTGGAAT TTGGTCCCAAAATTTTGATGCTTTTGATGAAAATTGGAATTGGGTATGCCATGATTTTTCAATTGGGTTTTAATTTTGGA GGCTGCAGAGTGTTATGTGATGGATTGTTTGTGGAATTGTGTTTTTATTGTGTATATAATGTTGGAATATTTAGCATTTA TTTTTTGTTTATGTACAAATTATGAAGGCTCACATTGTTTTGTTTTGTGTTTTTTTGTTGCTTTGAATATGATGAAACTG TATTTCAGATGCCCAAATCTTGAGGTGTTGTCAATCAGAAGCTGCCCTCATGTTACTGATGATTCTATCTCTAGGATTGC TGTTAATTGTCCAAAGCTTAGGGAATTGGACATCAGCTATTGTTATGATGTAACACATAAGTCATTGGCTCTGATTGGAA GAAATTGCCCCAATCTTAAGGTTCTGAAGAGAAATCTCATGAACTGGCTTGATCCTTCTCAGCACGTTGGGATTGTTCCT GATGAATATCTAAATGCTTGTCCGCAAGACGGGGATACTGAGGCTGCTGCAATTGCAAGGTCCATGCCTCATCTAGAGTG GCTTGAGATTAGGTTCTCCAAGTTGTCAGCTAAAGGCCTCAATTTGATATGTCAGAGGTGTCCTAACCTTGAGTTTTTGG ATCTTTCCGGGTGTGCTAACTTAACTAGTCGAGACATTGCTAATGCATCTTCCAGTTTGGCACACTTGAAAGACATCAAA AAGCCTAATTTCTACATTCCAAGGTCTGTCTTTCACACTGAAAGGTATGGACATTGGCAATTGTATGATGAGAGATTTCA GACAGATGTTTTCCGAATTTGAGCATTGTTACGAAGATTAATCCAAGATGTAAACTCTGCAATCGGCATGTCTGTCCCTC GTCCTTCACTCGTCTAGTCCGGAAATCTGAATAAGATTTTTACTGTGATTGTTACTGTTAATTATATATGTAGAAAATTT GATATTTGTCTTTGTAATTGCTGTTGTAAGTTGTTTGTCTTCCATGTATCTGCAATGTATTTATGCAGAAGATCATTTGT CTGAAATTCTCACCAATCACAATGGATCTATTTGCCTAATAATTTTGTAATTATTTCTTTCTTCTTTGGCTGCTGCATTA CTTATATGATTATCTTAGCTGTCTACCATAACAAATTGTCTCAGAATTATTTTATATTCATGCTTATAGGACCCTTATCT ACAGCGAACTTAAATTGTTAGTCAATGTGTAGATACTTGTTCTTGTGGAGTTATTAATCAATATCATTGAGGTGATTGCA TATCTGAAGTATAAGATCAGGTCACTTTTTTTATTCAGATTGCTAGGCCTCTCTGTCTGGTTTCATTCTAGCTCTAGTTG AAGTGGTGTCTTTAGTCATTGTAATTTGAATGAATGGAGATAGTTGCCTAGTCAAGAAGACATCCAGCCTTTTTAAATTT ACACACATCATGGAAAACTAAAGAGAGAGGAAAATTTACAAATGCAGTTAAAGAGTATGGTTATGCACTTCAGGAAAAAA GTGAAATAAACTTTTCTTATGGATTGACATGAAAGTCCGTTAACATAACACTCAAATGGCACTGAAACACCAAGTTATTT ATTGACCCGCTAAGATGATAGTTTTGTGACATGTCTAGCAAATCACCAATGCAGTTGTACTGTAAATGAAGCTTTGGATA CCAAGGTAAGAATAGGAGTGTAAGATGGGCATTCAGGTTTTGGGAATTCAAGGGAAGCAAGTAACTAAGAGCAATCCAAA AACGAGATGTCTGAGTGCCGCCATGAATAAGGTTGAAGGTTTGATTGAATAGGAGTTTGATCTGCCCCGAACATTGCTGG GCTTTATGTTACTTGGTCCTCTATAAAGACCCTTTGCTAACGGGGAAATCTTTGTTTGTTGGGCAACATGTTGCGTGCCT GGCTTGCTTGGTTCCATGACCATTCCGTACATTACTGCATGTAAGATAGAGAAATTGCTTGTGATCAAAATGTCCAATTC AGATTAAATGTCAGAGGAAAAGAAAAACTAGCAAATTTGGAGTTCAAAGTTGGTTACGTTTAGTTTCTTTTTGTTGCTTG GAGGTCATGAATTCCCTGGTTTCTGCCGTGCGTGTGCTTCCATAAGCTGAATAAATTACGATGTTGAAGAGAAAGAACCA TATAGCTAGCGTTTTGCTCATATCTTGAACGTGATTGAATGCAATAAGAAAAAGTGATATTTGTGGAGATGC
CDS sequence (LotjaGi4g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGAGGTAGAAGAAGGAAGCGATTCAGAGTGGAGCGAGTTGACTCGGGAGTGCCTCATCAACATCCTCTCTCG ACTCACCGTTGACGATCTATGGCGAGGCACCATGCTTGTCTGCAAATCATGGTTCAGCGCCTTCAAGGAACCCTCTCTTC ACTCTGTCTTCAACCTCGACCCCCTCTTCGACTCGCCCCGCGAGTTGCCTCGCTGGTGGTCCCCCGAATTCGAGGCCAAA ATCGATTCCATGCTTCGCTCTGTTGTTCAATGGACCCATATCTTCCTCACCCAGATCCGTATTCGTCACTGCTCTGATCG CTCCCTCGCTTTGGTCGCCGAAAGATGCCCAAATCTTGAGGTGTTGTCAATCAGAAGCTGCCCTCATGTTACTGATGATT CTATCTCTAGGATTGCTGTTAATTGTCCAAAGCTTAGGGAATTGGACATCAGCTATTGTTATGATGTAACACATAAGTCA TTGGCTCTGATTGGAAGAAATTGCCCCAATCTTAAGGTTCTGAAGAGAAATCTCATGAACTGGCTTGATCCTTCTCAGCA CGTTGGGATTGTTCCTGATGAATATCTAAATGCTTGTCCGCAAGACGGGGATACTGAGGCTGCTGCAATTGCAAGGTCCA TGCCTCATCTAGAGTGGCTTGAGATTAGGTTCTCCAAGTTGTCAGCTAAAGGCCTCAATTTGATATGTCAGAGGTGTCCT AACCTTGAGTTTTTGGATCTTTCCGGGTGTGCTAACTTAACTAGTCGAGACATTGCTAATGCATCTTCCAGTTTGGCACA CTTGAAAGACATCAAAAAGCCTAATTTCTACATTCCAAGGTCTGTCTTTCACACTGAAAGGTATGGACATTGGCAATTGT ATGATGAGAGATTTCAGACAGATGTTTTCCGAATTTGA
Protein sequence (LotjaGi4g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENEVEEGSDSEWSELTRECLINILSRLTVDDLWRGTMLVCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK IDSMLRSVVQWTHIFLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKS LALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCP NLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFYIPRSVFHTERYGHWQLYDERFQTDVFRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 98 | 92 | 2.88E-8 | ||
| PANTHER | 11 | 291 | 281 | 1.7E-107 | – | |
| PANTHER | 11 | 291 | 281 | 1.7E-107 | – | |
| Gene3D | 12 | 53 | 42 | 3.2E-10 | – | |
| Pfam | 13 | 55 | 43 | 2.0E-4 | ||
| Gene3D | 78 | 276 | 199 | 4.5E-36 | ||
| SUPERFAMILY | 83 | 269 | 187 | 4.51E-21 | – | |
| SMART | 116 | 141 | 26 | 4.4E-4 | ||
| SMART | 142 | 167 | 26 | 8.0E-4 | ||
| SMART | 239 | 264 | 26 | 0.23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0289100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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