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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0289100 |
| Transcript ID | LotjaGi4g1v0289100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT5G57900.1 SKP1 interacting partner 1; Swiss-Prot: sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1; TrEMBL-Plants: tr|I1JGR2|I1JGR2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0289100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66142123..66143369) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAACGAGGTAGAAGAAGGAAGCGATTCAGAGTGGAGCGAGTTGACTCGGGAGTGCCTCATCAACATCCTCTCTCG ACTCACCGTTGACGATCTATGGCGAGGCACCATGCTTGTCTGCAAATCATGGTTCAGCGCCTTCAAGGAACCCTCTCTTC ACTCTGTCTTCAACCTCGACCCCCTCTTCGACTCGCCCCGCGAGTTGCCTCGCTGGTGGTCCCCCGAATTCGAGGCCAAA ATCGATTCCATGCTTCGCTCTGTTGTTCAATGGACCCATATCTTCCTCACCCAGATCCGTATTCGTCACTGCTCTGATCG CTCCCTCGCTTTGGTCGCCGAAAGGTACAAAATTTCTCAAAAATTCAAATACCCAATTGTCTCTTTTGTTTATGTTTGCA TATGCATGATTAGGGTTTCTGGAATTTGGTCCCAAAATTTTGATGCTTTTGATGAAAATTGGAATTGGGTATGCCATGAT TTTTCAATTGGGTTTTAATTTTGGAGGCTGCAGAGTGTTATGTGATGGATTGTTTGTGGAATTGTGTTTTTATTGTGTAT ATAATGTTGGAATATTTAGCATTTATTTTTTGTTTATGTACAAATTATGAAGGCTCACATTGTTTTGTTTTGTGTTTTTT TGTTGCTTTGAATATGATGAAACTGTATTTCAGATGCCCAAATCTTGAGGTGTTGTCAATCAGAAGCTGCCCTCATGTTA CTGATGATTCTATCTCTAGGATTGCTGTTAATTGTCCAAAGCTTAGGGAATTGGACATCAGCTATTGTTATGATGTAACA CATAAGTCATTGGCTCTGATTGGAAGAAATTGCCCCAATCTTAAGGTTCTGAAGAGAAATCTCATGAACTGGCTTGATCC TTCTCAGCACGTTGGGATTGTTCCTGATGAATATCTAAATGCTTGTCCGCAAGACGGGGATACTGAGGCTGCTGCAATTG CAAGGTCCATGCCTCATCTAGAGTGGCTTGAGATTAGGTTCTCCAAGTTGTCAGCTAAAGGCCTCAATTTGATATGTCAG AGGTGTCCTAACCTTGAGTTTTTGGATCTTTCCGGGTGTGCTAACTTAACTAGTCGAGACATTGCTAATGCATCTTCCAG TTTGGCACACTTGAAAGACATCAAAAAGCCTAATTTCTACATTCCAAGGTCTGTCTTTCACACTGAAAGGTATGGACATT GGCAATTGTATGATGAGAGATTTCAGACAGATGTTTTCCGAATTTGA
CDS sequence (LotjaGi4g1v0289100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGAGGTAGAAGAAGGAAGCGATTCAGAGTGGAGCGAGTTGACTCGGGAGTGCCTCATCAACATCCTCTCTCG ACTCACCGTTGACGATCTATGGCGAGGCACCATGCTTGTCTGCAAATCATGGTTCAGCGCCTTCAAGGAACCCTCTCTTC ACTCTGTCTTCAACCTCGACCCCCTCTTCGACTCGCCCCGCGAGTTGCCTCGCTGGTGGTCCCCCGAATTCGAGGCCAAA ATCGATTCCATGCTTCGCTCTGTTGTTCAATGGACCCATATCTTCCTCACCCAGATCCGTATTCGTCACTGCTCTGATCG CTCCCTCGCTTTGGTCGCCGAAAGAAGCTGCCCTCATGTTACTGATGATTCTATCTCTAGGATTGCTGTTAATTGTCCAA AGCTTAGGGAATTGGACATCAGCTATTGTTATGATGTAACACATAAGTCATTGGCTCTGATTGGAAGAAATTGCCCCAAT CTTAAGGTTCTGAAGAGAAATCTCATGAACTGGCTTGATCCTTCTCAGCACGTTGGGATTGTTCCTGATGAATATCTAAA TGCTTGTCCGCAAGACGGGGATACTGAGGCTGCTGCAATTGCAAGGTCCATGCCTCATCTAGAGTGGCTTGAGATTAGGT TCTCCAAGTTGTCAGCTAAAGGCCTCAATTTGATATGTCAGAGGTGTCCTAACCTTGAGTTTTTGGATCTTTCCGGGTGT GCTAACTTAACTAGTCGAGACATTGCTAATGCATCTTCCAGTTTGGCACACTTGAAAGACATCAAAAAGCCTAATTTCTA CATTCCAAGGTCTGTCTTTCACACTGAAAGGTATGGACATTGGCAATTGTATGATGAGAGATTTCAGACAGATGTTTTCC GAATTTGA
Protein sequence (LotjaGi4g1v0289100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENEVEEGSDSEWSELTRECLINILSRLTVDDLWRGTMLVCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK IDSMLRSVVQWTHIFLTQIRIRHCSDRSLALVAERSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPN LKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC ANLTSRDIANASSSLAHLKDIKKPNFYIPRSVFHTERYGHWQLYDERFQTDVFRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 281 | 271 | 4.6E-95 | – | |
| PANTHER | 11 | 281 | 271 | 4.6E-95 | – | |
| SUPERFAMILY | 12 | 58 | 47 | 2.62E-8 | ||
| Gene3D | 12 | 53 | 42 | 3.0E-10 | – | |
| Pfam | 13 | 55 | 43 | 1.9E-4 | ||
| Gene3D | 73 | 270 | 198 | 6.2E-30 | ||
| SMART | 106 | 131 | 26 | 450.0 | ||
| SUPERFAMILY | 108 | 259 | 152 | 3.92E-16 | – | |
| SMART | 132 | 157 | 26 | 8.0E-4 | ||
| SMART | 229 | 254 | 26 | 0.23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0289100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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