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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0292100 |
| Transcript ID | LotjaGi4g1v0292100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein 18; TAIR: AT4G30510.2 yeast autophagy 18 B-like protein; Swiss-Prot: sp|Q8H1Q8|AT18B_ARATH Autophagy-related protein 18b; TrEMBL-Plants: tr|A0A0R0FJH8|A0A0R0FJH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0292100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66378855..66383433) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGTTCAGCTCAAGTCTTCTTGCTATAGTTGGGGCTGGTGATCAGGTAGTTAAATACTACTACTGATCAAGTTTACT TTTCTATGAATTGGCATAATGTTATGTTTTCTCTCTGATGGTGTGTTGTTTTGATTGATAAATAATGCAGCCAACTTTGT CGCCTCGCCGGCTCTGTTTATTCAATACCACCACTGGAGCTGCTCTTAGAGAATTGAACTTTCTCACTTCAATACTCGCT GTTCGCATGAATAGAAAAAGGTTAAAAAGCTTGAACTGTGAAGTTTATTGCTTAAAAATACATGCTAGTATGTAATTTTT TATTCAGTGAAGTTTGCTATAATTTTTTAACTTCCTTATAGAAATGAATCAATCAGCATAATATTATTTGACCATTTAGA ATAATCCTAACGGTTGCTTTCTTTCTTTTTAGTGCAGACTCATTGTTATTTTACAAGACAAAGCCTATGTATATGATTTA AATAGTCTCACAATCTTGGACACTATTGACACGGTGCCGAATAATAAAGGTCAGAGTGGAATCAATGTTCAACTAGGAGA GTTTGTGATAAGCAATTAAGCATTGTTCTTCTTCTGAGTTATGTGAATAATCCTAGCTTTGTGTTTTATGAAATTTCCCT CCAGTTTAAGTTACAGACTGACCTTTCAAGAATGGTGTCATGTCATGTATTGAAACAATATCATTCATCAGCAAATCCTA GTTTATTTATTTATTTTTAAGTAGGAAATTGTTAAGGTTTTGATTTGTTAGATTATTATCATGTTTTCAACTGGATTATG ACAAGGATTGTGAATTAAACATTTATTATGCCACTCTGACTGCTATATCATGCACATACTGCAGGACTTTGTGCTTTTTC CCCTTGTTTGGATGCTTGCTTCCTGGCTCTTCCTGCTAGCACCACCAAAGGATCTGCATTATTGTACAATGTCATGGAAT GTAATTTACATTGTGAGGTTATACATAAAATTTTCTTTTCAGAATTACTTTGCATGACAAAATAAAATGGTTCTGTTACT AATATCCGTGAGTCTCTTTTGCTGTCGTCCTTTCACTACCTTGCAGCCGCAAGCTAGTTTGAGGATGAAAACTGAAGACA TAATTATTAATTTTTTTGAACTTTATTGTTAATCTATATTCTTCACTACCTTCTCGGTATTTCTTGTTTATTTGAATCAA CAATTTGTATTCCTTTTTGGGAATTTCAAGAACATATTGATCAGTTATCTGAACTGTATGCCTACTTGAGGATTGTGAGA TTTCCTTCTTTAGAGAGTATAGTAGGAAAAAGATGTGGTTTTATGTACACATCACTAATCGATTTATTTCATTATTCTAC CCCCTTAGAGCAATGCTTTCTTTTTAAGGATATATTTACCCCATTTTCTTTTATCTTGCGGCTATATATGAACTGAAGAT CCTGATTACTTACATTCATTACATTATTATTTACAGATTGAGGCTCATCGTTCACCACTGGCTGCAATGGTCCTTTCTTC TAATGGGATGTACATAGCTACAGCATCTGAGCAAGGGACTATAATTAGAGTTCATTTGGTGTCAGATGCAACTAAGGTGA TGAAAATATTCAGTGACCTTGTGAATACTGATACAGGATGTTAGCGGTTTTAGCCACTATTTCTTGCTTCTTTCAGTGTT TTCTGTATTTGAAGATGTCTGCAAGCAATATTTTATACTATTATATTTTTAACATGCCCCCTCACGCAAGAGTCCGTTTG GGCTTGAAGTGTGGAGAATGCACAGACCCACGTGAATGGTTTTATATTATAGAGGCTTTGATACCATGTCAAAAAACCAA TTATCCCAAAAGTTTAAGTTGTTTGGCAAGGGCCACGTGAATGGTTTTATATTATTATTTCTAACAGTGATTTTGGTTAC CAAATTACCATTGGATCAAATAACGGTACAATCCTCTAGCAGGTCCCTATAAATTTTATGCCCGTTACTCATTACTGGTA CTTCTGATCTTGAGATTACGAAACTAATATGTTGGTTCAAGTATGTGAATGCTTGTATATCAACTGGTGAGGTCCCCCAA AATGATTATGGCTCCCCCATTGCATATTTTTCAGTTATTCATCCTCCTTATCCTTTGTCTGACTCTGGTTATCTCCTATG TTGGATGACTCTTCAAGAGGAATTGTGTTTTTTATGTTATATAAGTGGACTATCAAATCCTCTTGGTGTTTTTGCATCCT ATCCTAGTTTAAGCTTTCTATTTACTGGGTATTTTTTTTTGTATTTCTTCCTCAATTTTCCTCATGTCGGTTTTCATATG ATTCAACGGCAATGCCTCAATATTTATTTTGTTGACGTTGTTTGCTTACTTAATGTCAATTCACAATACATTAGTATTTG TTGTGGTAATAAATAGAACCAAATGATGTTCTGGCTGCTTTCTTGCTCTTATAAGAAAATTCATTTGCTTAAGTAAATCC TTAATTCTATCTCAAAGAATAAAAAAAGACATGCTTCCGTCTGATGCATGTCTTAGAGTTCTGATCACATTGAATCCTGC AGATGCTCTTCAGAACTTGAGATTTTTGGTGAACAATGAAATATTATCTAGTATATACATACATTGGAAGCCCAAAAACT AGTTACTTTATTTTTCTGACCTTATTATCAAAGGTAAATCCTCCAAGTCTCTAACGTGTAAATGGAGCCATGGGACGAAA TACTTTCTTCTAACATGATGGTCCTTTGTTTTTAAAGTCTTTTTGGTATCCATTGTTTTCCTTTAAAGTAGCTCATGCAT GCGTTATATTCATGATATATGAATTATATCCCATCTAGCAGCTTTTGTTGTTTTTGATATTATATTTGTTATAATTTTAC TATAGGTGTAGAATCTGACAAATGTTTTCATAGCAGTCATATAGCTTTCGAAGAGGAACATATCCATCTACTATATTTTC TCTTTCATTTGGGCCATCAAAGCAGCTTCCGGATATTCTTGCTGCCTCAAGTTCTTCTGGTTCTATTCATATTTTCACTC TTGGACTTGCTTCACATCCAAGGTAATAATTGCAATTTAAAATATTCCTCCCCTATATCCCAATTATTAGACTACTTTTT GTTCACAAGTCAACTTTGACACATAGGTTGGATTTCTTTAGATCACTAAAGGTTGAGCGAGCTTTATTTAAATATAAAGC AAATCTCTAACCTCTGTGTTTGGCATTGTCACTGCTTAAATATTGGAAAGATGTCTGATTCTCTGATGTGTATTGGATGA CTTTAGCAGGATCAAGAGATCAAGTAGTTTTCTTGGATCAATAATTCCTGGTGCTGTTAATGATGTACTGGATCCTGCTT ATCATCACGTGCTTCATAATGCTGTTCCTGCAGGGGTCAAAAGGTGAAGTATTTTGAGGTTAAATAACTAGATTCATATA AAACTATCTGGTGTGATCGTTATATTTCATAATTAGGAAGGCTTACTTTATCTTTTTTGGAGATTTTTGGTGTAAGCCAG ACAATTATTTCTGATAATCTGATTACATAGTAGTAAGAATGAGTATTTGCATAAACTTATTTTGAGAAATCTTCGGTTTT TCATACAGCTATGCAGTGATTCACAAGGTAGAAAATGTTACTGACGCCTCATCATCTGAACTTCTAGCTTGTAGGTGAGT ATCTTTATGCATGTCTCTATCATCCCCATTCACTTCTTGTTTGGTTTTGTCTTTGATCTTCTTGAATTGAGTATCAGCTA ATAGATTAAACTGGGATCCTGCATATGTGGTGTAGCTTTTAAACTGATTGCTTGTGATCAGTAGCTTCATTTGGCTCTTG AACTTATACAAGATTCATGTGGATCTATGGTTTACAGTTTACCGCAACACTACAACTTGGGCCTTTCAATATAGAATATG AAGTTATTTTTTTCTTGTTTGTGTGTGCATGCGTCTGTGCAATCCGACCATTGTTAAGATACATTGACAATCAATTTAGG CACCAAGACAAATATGTAATACATGTGAGAGATTAATAAACGTGGGAGGTGGTTTGGCAAACATTTCTGATTTTCACTTG GACTGTGGGTTCTAGTTGCCCGGCACTGATATCCGTGTTTCTGACAATATTAGGGTCTATGAGGTTTCTCTGATTAAGTG AAAAACTCTTTATCCAACTAATGATGGGTAACTATACAAAAGTCAAGGTACAACATGTAGAATTACCAAAACAATTATAA ACAGAGGCGTAGGTGGTCCTTTTAAAGCTATGCTCATTGAGCAGTTGCTCTTTTTTTTGGGTTATGAAGGTCCATGATTA GCTTGGTGTGGTCATACCTATTTGTTCAATAAATTATGTCATATACTGATATTCATGTTTCAATAAATTTATGATGTCAA TTTGTTTGCTTAAAGTTTGTGATTTTCAATTTTTCAGGGCCAATATGTGTGTAATAACTTACAATGGCTACTTCCAGGAA TACAACTTAAGCATTGATGCCCAGAATGAATTATCTTGGGCTTTAGGGCGTGAGTTTAATCTTTTGACTGTGACCTTGGA TGAAGTGGCAAACACGTAG
CDS sequence (LotjaGi4g1v0292100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTTCAGCTCAAGTCTTCTTGCTATAGTTGGGGCTGGTGATCAGCCAACTTTGTCGCCTCGCCGGCTCTGTTTATT CAATACCACCACTGGAGCTGCTCTTAGAGAATTGAACTTTCTCACTTCAATACTCGCTGTTCGCATGAATAGAAAAAGAC TCATTGTTATTTTACAAGACAAAGCCTATGTATATGATTTAAATAGTCTCACAATCTTGGACACTATTGACACGGTGCCG AATAATAAAGGACTTTGTGCTTTTTCCCCTTGTTTGGATGCTTGCTTCCTGGCTCTTCCTGCTAGCACCACCAAAGGATC TGCATTATTGTACAATGTCATGGAATGTAATTTACATTGTGAGATTGAGGCTCATCGTTCACCACTGGCTGCAATGGTCC TTTCTTCTAATGGGATGTACATAGCTACAGCATCTGAGCAAGGGACTATAATTAGAGTTCATTTGGTGTCAGATGCAACT AAGTCATATAGCTTTCGAAGAGGAACATATCCATCTACTATATTTTCTCTTTCATTTGGGCCATCAAAGCAGCTTCCGGA TATTCTTGCTGCCTCAAGTTCTTCTGGTTCTATTCATATTTTCACTCTTGGACTTGCTTCACATCCAAGCAGGATCAAGA GATCAAGTAGTTTTCTTGGATCAATAATTCCTGGTGCTGTTAATGATGTACTGGATCCTGCTTATCATCACGTGCTTCAT AATGCTGTTCCTGCAGGGGTCAAAAGCTATGCAGTGATTCACAAGGTAGAAAATGTTACTGACGCCTCATCATCTGAACT TCTAGCTTGTAGGGCCAATATGTGTGTAATAACTTACAATGGCTACTTCCAGGAATACAACTTAAGCATTGATGCCCAGA ATGAATTATCTTGGGCTTTAGGGCGTGAGTTTAATCTTTTGACTGTGACCTTGGATGAAGTGGCAAACACGTAG
Protein sequence (LotjaGi4g1v0292100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFSSSLLAIVGAGDQPTLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRKRLIVILQDKAYVYDLNSLTILDTIDTVP NNKGLCAFSPCLDACFLALPASTTKGSALLYNVMECNLHCEIEAHRSPLAAMVLSSNGMYIATASEQGTIIRVHLVSDAT KSYSFRRGTYPSTIFSLSFGPSKQLPDILAASSSSGSIHIFTLGLASHPSRIKRSSSFLGSIIPGAVNDVLDPAYHHVLH NAVPAGVKSYAVIHKVENVTDASSSELLACRANMCVITYNGYFQEYNLSIDAQNELSWALGREFNLLTVTLDEVANT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 307 | 307 | 1.3E-103 | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 307 | 307 | 1.3E-103 | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 13 | 4 | - | – | |
| Phobius | 14 | 317 | 304 | - | – | |
| Gene3D | 18 | 231 | 214 | 4.7E-12 | ||
| SUPERFAMILY | 21 | 203 | 183 | 5.86E-20 | ||
| SMART | 115 | 154 | 40 | 0.71 | ||
| SMART | 158 | 202 | 45 | 15.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0292100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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