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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0293400 |
| Transcript ID | LotjaGi4g1v0293400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT2G23810.1 tetraspanin8; Swiss-Prot: sp|Q8S8Q6|TET8_ARATH Tetraspanin-8; TrEMBL-Plants: tr|I1LVX1|I1LVX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0293400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66519354..66522512) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAACTCTCACTAAACAGAATGTGTAACATATTTCCAAATAAACCATGCAATCTCCCAAATTTAAAAAAGCTGTGAAA GAAGGAAGAAGGATAGTGACAACATTAAGTTAAAAAAACGCGTTTCATTAACTTCAAACGTGTTTGGCCAAATAGGAAAT AGCGTAGCGTGTTAATTAACAACTCGTTTGCTGTCAAAACAAACAAAGCCTTATATTAAAACCCTTCACCTCTCTTCTCT CACTACTTCTCTTCATTCTATAATCGATTTTCACATTCAATCGATTTTCATCATGGTGAAGTTCAGCAACAGCGTGATCG GAATTCTGAACCTACTCACCCTCGTCCTCTCAATCCCCATTCTCATCGCCGGAGTCTGGCTGAGCAAACAAGCAAACACC GAATGCGAACGGTGGCTGGAGAAACCCGTCATTGCTCTCGGCGTTTTCCTTCTCATCGTCTCACTCGCCGGCCTAATCGG CGCGTGTTGCCGCGTTTCATGGCTGCTCTGGGTTTACCTCCTCGTGATGTTCGTCCTCATCGTTCTCCTCTTCGCATTCA CCATCTTCGCGTTTGTTGTCACCAATAAAGGTGCAGGGGAAGCGTTGTCGAATAAGGGGTATAAGGAGTATCGGCTTGGA GGGTACTCTGATTGGTTGCAGAAGAGGGTTAACAATGATAACAACTGGAATAGGATCAGGAGCTGTTTGCAGTCTGGGAA AGTTTGCTCTGATTTCAAATCGAAGTTTCTCAATGATACTGTTGATAAGTTCTATACTGAGAACTTGTCTGCGCTTCAGG TTAGGGGGGTTTCTTTTTTGACCTTGATTTATCTTCTGGGTTGTGATCAAAATTTGAGCTTCGTTGCGTGTGTGATTGGA ATTTTGGGGTGTGAATTTGGTGCTTTCGTTGCGTGTGTGATTGAAATTTTGAGTTTGAGTTTTTTCTGTTTTGAATTATT GGAAACTTTGATTTGTTTATTTGTTGCGTGAAGGGTTGTTCTTCTGTTTTACTTGAAATTGAAACAAAGCTTTAGGTAAT GAGTGATCTTCAATTCAGAAAGGTTTCTGGAAATGTGATCAATATTAGCTGAATTTTTTTGGGTGACAATGAACATGAAA TTTCTGTGTGTTTAATACTATTTAAGAAGAAAAGAAAACTAGCTACATAATTATCATGCAAAAAGTTAACGTGCTTTGTG AGATATTGTTACTTTTGATGAGTAGTCAAAGCTTCTTTTTGAAAGGTGGTTTTTTAAACTTGGATTGGTTCTCATCTGAA AAAGGCTGTGTGCTCTTATGTGATTTTCTGATTTCCAATGCATTTTTTGTCGGCACTTTTAGGGGTTCTTTTTGTTAGTT TGTTTAAAAGGGTCCTGGAGCAACATGGATGCTTAAGAGTGTTGTTAGTGGGCTTAAAGTTCATCACTTTTTAGCTCTTG AATCCCCTTTTTTTAGTGAGCACTTCTGTTGCCAATAAAAATAAAATAATCTATGGTTCCATTCCATGTAGCATTAGGGC AGGGATGAATTTCTTTAGCCAATTTAAAGGATAGAAAATGATGCTTCACATAAATGAGTGCATGTTCTTGTGACTGCTTA ATTTAATGGATATCTTATGATTGAATTACTTTCTGTGATACACAAATATTTATGGTGATTGGTTATTTCATGTTAATCAC TTATTTTCTCTAGGTTTAAGTTCTACGGTTTCTTCTGCTGCCCCTCTTAAGTTAGTGCATATTTGGATACATGGGGAAAA TAGCAGTCAGCCAAAATCAGTGTACTAAAGCTACTTAGCTTTTGTGGCTGTGCACCTTGATCTTGCCTTCACCATGAATT TCCACCGTGTATCCAAAAATGCATTTATTCAGTGCCTACAACTTCATTTTTGTGTGGCTCTGTTCCTATGGCAGGGCAGA GGGTCTACATTTAGTTCTATTTTACTGCTTTGTTACCTCATTCTAAAACTGGTGTGATTTCGTTGATTTAGAATGTTTGA TACTATTTACTCCATTAGTATGTTTGGATCATGTTTTTTTTTTCTCCAAATCAATTCTGAAACCTGAAGCTACTCACAAG CTTTTTACCTTCTGATTTAGAGCTAATTGTAGAAGAATTTCTAGACATGCTCAAAATATCTGTTTCCAAATTGCACTGCA GCTGAGTGGCTGAGTGGCCCAGCTTCAATTTTGTTATCTGACTATTATCCTTTTTGGATGTTTTCTGCAGTCTGGATGCT GTAAGCCTTCAGATGATTGTAATTTCACCTATGAAAATCCAACTACCTGGACGAAGCCAGCAAATGCTACTTATACTAAC ACTGACTGTGATGCTTGGAATAACGATCAAACCATTCTGTGCTTCAATTGCCAATCTTGCAAGGCTGGTTTATTGCAGAA CATCAAGACTGATTGGAAGAAGGTGGCTGTTGTGAACATCATATTCCTCATCTTCCTCATTATCGTGTACTCTGTCGGTT GCTGTGCATTCAGGAACAGCAGGAGGGACAATTCAAATTGGAAGAGATATAACTAGGTTGATAATGATCTTAGCATGTAG ATGAGTTAGATCATTTGGTTTATATGTTGGATAATTTTCTTAATGGGTTCTATATGTGCTGAACTTTATACTGCTTTTTC AGTACAGTTTGCTATGTAAATTTCACAATTTTATATTGCAGTTTTCTAGTACCAACTGTTCTTAGATATTACTTTGGTTG GGCATACTGCATTTCCTTCTGTCCCTACATCTTATATATTGTCACTATCAGTTTGGTTGAAGCTATATGTTAGTGCTGAA AGACCATGTCATTATCAGTTTCAATAGTAACACTATTGAATTGAATTATTGATGCGTGAGGACCTAAACTGAGCTCATTG ATTGACCCATCTTTTGGATAAGGAAATCATCTGTTATGAGCTTGTGAATGAAACTTCAAACATGGTCCAGCCTTAATGTC AAGTCTCTGAGTTTGATTTCTCTTAACTTCTATACACTCATTGCGATTGCTGAGTTTGCTCCATCTATCCGTTCTTGTTC TTATCCCTTAACCACTAATTTTCAAATTTCAGCTAGATTTAGGAATGAAATTGTCTATTGGTCATTTTCGTTTTCTGTTT CTGTTAAAAAGCATGTTGTTACTTTTAACTTATTGGAAG
CDS sequence (LotjaGi4g1v0293400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGTTCAGCAACAGCGTGATCGGAATTCTGAACCTACTCACCCTCGTCCTCTCAATCCCCATTCTCATCGCCGG AGTCTGGCTGAGCAAACAAGCAAACACCGAATGCGAACGGTGGCTGGAGAAACCCGTCATTGCTCTCGGCGTTTTCCTTC TCATCGTCTCACTCGCCGGCCTAATCGGCGCGTGTTGCCGCGTTTCATGGCTGCTCTGGGTTTACCTCCTCGTGATGTTC GTCCTCATCGTTCTCCTCTTCGCATTCACCATCTTCGCGTTTGTTGTCACCAATAAAGGTGCAGGGGAAGCGTTGTCGAA TAAGGGGTATAAGGAGTATCGGCTTGGAGGGTACTCTGATTGGTTGCAGAAGAGGGTTAACAATGATAACAACTGGAATA GGATCAGGAGCTGTTTGCAGTCTGGGAAAGTTTGCTCTGATTTCAAATCGAAGTTTCTCAATGATACTGTTGATAAGTTC TATACTGAGAACTTGTCTGCGCTTCAGTCTGGATGCTGTAAGCCTTCAGATGATTGTAATTTCACCTATGAAAATCCAAC TACCTGGACGAAGCCAGCAAATGCTACTTATACTAACACTGACTGTGATGCTTGGAATAACGATCAAACCATTCTGTGCT TCAATTGCCAATCTTGCAAGGCTGGTTTATTGCAGAACATCAAGACTGATTGGAAGAAGGTGGCTGTTGTGAACATCATA TTCCTCATCTTCCTCATTATCGTGTACTCTGTCGGTTGCTGTGCATTCAGGAACAGCAGGAGGGACAATTCAAATTGGAA GAGATATAACTAG
Protein sequence (LotjaGi4g1v0293400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKFSNSVIGILNLLTLVLSIPILIAGVWLSKQANTECERWLEKPVIALGVFLLIVSLAGLIGACCRVSWLLWVYLLVMF VLIVLLFAFTIFAFVVTNKGAGEALSNKGYKEYRLGGYSDWLQKRVNNDNNWNRIRSCLQSGKVCSDFKSKFLNDTVDKF YTENLSALQSGCCKPSDDCNFTYENPTTWTKPANATYTNTDCDAWNNDQTILCFNCQSCKAGLLQNIKTDWKKVAVVNII FLIFLIIVYSVGCCAFRNSRRDNSNWKRYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 263 | 261 | 3.7E-127 | – | |
| PANTHER | 3 | 263 | 261 | 3.7E-127 | – | |
| CDD | 5 | 98 | 94 | 0.00951638 | – | |
| Phobius | 6 | 30 | 25 | - | – | |
| Pfam | 7 | 255 | 249 | 1.2E-36 | ||
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 31 | 41 | 11 | - | – | |
| Phobius | 42 | 64 | 23 | - | – | |
| TMHMM | 46 | 65 | 20 | - | – | |
| ProSitePatterns | 50 | 72 | 23 | - | ||
| Phobius | 65 | 69 | 5 | - | – | |
| Phobius | 70 | 96 | 27 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 97 | 233 | 137 | - | – | |
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 234 | 252 | 19 | - | – | |
| Phobius | 253 | 270 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0293400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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