Domain Predictions — View

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PS00421

Source: ProSitePatterns

Description

Transmembrane 4 family signature.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v2021680.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tetraspanin-8-like [Cicer arietinum] gi\|502150094\|ref\|XP_004507785.1\|	Domains CYTOPLASMIC_DOMAIN IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PS00421 PTHR32191 PTHR32191:SF2 TMhelix TRANSMEMBRANE	10
Lj4g3v2021690.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains CYTOPLASMIC_DOMAIN IPR000301 IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PR00259 PS00421 PTHR32191 PTHR32191:SF2 TMhelix TRANSMEMBRANE	12
Lj6g3v1048980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Senescence-associated protein [Vitis quinquangularis] gi\|380719865\|gb\|AFD63133.1\|	Domains CYTOPLASMIC_DOMAIN IPR000301 IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PR00259 PS00421 PTHR32191 PTHR32191:SF2 SignalP-TM_EUK TMhelix TRANSMEMBRANE	13
LotjaGi2g1v0333600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tetraspanin; TAIR: AT5G46700.1 Tetraspanin family protein; Swiss-Prot: sp\|Q9FIQ5\|TRN2_ARATH Protein TORNADO 2; TrEMBL-Plants: tr\|A0A151TH91\|A0A151TH91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0333600	Domains CYTOPLASMIC_DOMAIN IPR000301 IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PR00259 PS00421 PTHR32191 PTHR32191:SF49 TMhelix TRANSMEMBRANE	12
LotjaGi4g1v0293400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tetraspanin family protein; TAIR: AT2G23810.1 tetraspanin8; Swiss-Prot: sp\|Q8S8Q6\|TET8_ARATH Tetraspanin-8; TrEMBL-Plants: tr\|I1LVX1\|I1LVX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0293400	Domains CYTOPLASMIC_DOMAIN IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PS00421 PTHR32191 PTHR32191:SF2 TMhelix TRANSMEMBRANE cd17324	11
LotjaGi6g1v0198800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tetraspanin family protein; TAIR: AT2G23810.1 tetraspanin8; Swiss-Prot: sp\|Q8S8Q6\|TET8_ARATH Tetraspanin-8; TrEMBL-Plants: tr\|I1LVX1\|I1LVX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198800	Domains CYTOPLASMIC_DOMAIN IPR000301 IPR018499 IPR018503 NON_CYTOPLASMIC_DOMAIN PF00335 PR00259 PS00421 PTHR32191 PTHR32191:SF2 SignalP-TM TMhelix TRANSMEMBRANE	13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	16.67