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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0294400 |
| Transcript ID | LotjaGi4g1v0294400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | auxin canalization protein (DUF828); TAIR: AT5G57770.1 auxin canalization protein (DUF828); Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|A0A0B2QBW5|A0A0B2QBW5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0294400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66676817..66680095) extracted from Lotus japonicus Gifu genome v1.2.
AATATCAATATATTTTCTTTTAAAAAACAAGTTTAACATATAATTATGAAAAATTGGCCTACATTTATAAGAGTTTAAAA ACTATAATATAAACTCAGGATGTGACTAGATGGTATAATCATTATATTAATATCCTGGAGACTTAGATTATATTAATATC CTGGAGACTTAACTGCTATAAATATGCATGCATGCTTGCTTACATATATTCATATCTGAATTTTCATCCTGTTCAATTCA TTTGCAAAATAATTTGTTCTCTGAATGTGAAGATCGTACATCACATTATCATGGCTTCCAATTATAATCTATCCCCTTCA GATGCACATCCTGAGACCATGGATTTTCTTTCACTTGCTTGGTGTGACTTTGCTGTCCAAGCTCTGCAGCCAGAACCACA ACATGGATCAGTTGTTCTAGTTGATAATCCTATGAAGCAGCTAGAGCCTAGTAGCCCCATGGTGAGTCAACTCAAGCTGC AACTGTTCCATTTTTATTCTTATAATTAATGTTCAATTTCTTCAACCTACTCACTTGGGCCAATTATTTGTGAAAACTTT TACAAGATGGAAAAGAGTGCTAGAATGGATGATGCAGATTTCAGGTCTCTACCTTCATGGAAGTCTAATGATATGAAGGT AAGACATCACACAATAGAAGCATGTCATCTAATGAACGTTAGAGCTTTACTTCGAGACAAAATGTGAAAAAAACTCTTCT ATAAATTGTGATGAAAATTCGTTCAGATTGTACTGGCTATCCAAACACTAATACCATAATGAGAAACGACCTTTATGACT AATTTTCTTGTTGCCTTTTGTTTTATCAGTCATGGATATGGATGCAACAAGCCATGCATCCTGAATTGAATTACAATAGC TGTTTCAGAAAGAAATGGGTATGTATTCTTTTCTCTCAATCTCGCGGGGATTAAATCTTTAATTTATAAATAGTGTCTCA TTTCTTATCCCGCCAATGAATTTTTGTTATGCCAAATAAAAACCACCGGAAGTTTGTTACTACTATATCTATGTCGTTGT TAATTTACATGTCAGAATTTCATCGGTAGAACAAGAAATAAGACATCATATTGAGGCAAAAGATCTTGATGGAGTCTGCA TGCTAGTTCATTTGATTGAAAGTAGTATTTTTTTACCATGTAGATGCCATGGAAGCAGATCATACCATTGAAGAGTGTCT CAATAAAGAAATGGTTTAAAGAAATAAAGCTGAGGAGGAAAGAAGATCAGAGATTGCAAAGAGCAGAGGTGCATGCAGCT ATATCTATAGCAGGGGTAGCAGCAGCTCTTGCTGCTATTGCTGCTGAAAATTCCAAAAAAGAGTCCAATGAAGATAGAGA TGCAGCAATAGCCTCTGCAACTGCCTTGGTTGCTGCTCAATGTGCAAAAGTAGCTGAAGCAATGGGGGCAAAGAAAGAGC ACCTTGGGAGTGTGATTGGCTCAGCCATGAGTGGCACAAGTCCAAGTGATATTCTCACTCTCACTGCTGCAGCTGTAACA TGTAATTTTCTCATCCTCACTCATCTGTTTAAATACCTGTTATTTTATTTTAAGGGGATTTATAGATACAAGATATAGGA GCAAGAGATTTTGGAGCTAAATATATGTTATTGGTATATGGGGTGACATAAGTGTTAAACTTCCTGGCCCAATTGAATCT TGACATGGCCCTCCCCCAATAGAAAAGGCAATTTTTAGGACTATTTCATTTTTGTATATATAGATGAAGAAATTTGTTAC ATGAGCAAAAGGATGAAAACATCACTTCATTTTTATATTTTTAACTGTTATTGGTGTTCATGCCTTCTATATTTTATGTA CCATCTGTTGTTGTTGCTGATAGACTCTGTTGGGTAAGTGCAGCATTAAAAGGAGCAACCACACTTAAAGCAAGATCAGG ATGCAAAAACAGATTGAGTGGGGGAGTCCCCATCTTGCCAATTGAAGACAACAATGATTTGGACTTTGACTTTGAAAAAG GGAGATTGATTCTTTCACAGGGTGCTGAGTTATATGTGGAAACACCAGAAGGTACATTTGTGCAACAAAAAGCCCTGCTC TGCAGTACCATAATTCTTAACTTCTAACTATAGAAATTACTTCACCAACATATATAACTAAATAGCTTTAAGAAGGAGAA TTATTAGCTATTAAGCCTTATTTGCTTTTCTAATTTATGATTGTTTCAATTGTCTAAACAGGGAGGTACATGCCGAGATC TGTGGCAGTAGTTCTAAATGGTGATGCCAAGGTCAGGATCATGATCTATCAAGTTTGACTTGTATCAATTGGATTTAAAA TGAAAACATATCCAGAAAACAATCATATAAAGCTACTTTCCATTTATTGACTTATAAAATGTTTGGTCTCATGGTGAAAT GCTCCAGCATCACTTATGGTTAGAAATTACAATTCTTACCTTGTGGGTAAATTTGACAAGGATTTTAACTTTCAAGCAAA TCATAAAACCAAACATGCTATTAGTTAATAGTAATACGCTTCCTAAGAAAATACAGGCACCTTATAATTGAATCATCTGT TCAATTGAACTTTCAATGAGAAATTTTCAATTATTGAAACTTCCATACTTGAAGTCTTTAATCTTTGAATTTGAAGTCTA GCAATTGAGCTCAGGATTAACATAAACATAGTGGAATAAATCTAGCTTTACAGGTCTATAGGTATGTCTTTTTTGTCATT CTGACTTCAAATGCAATGATCTTCATTCTAAAATTACAGGTTGTACTTGTGATGAGGAAGCACAATCTATTTAAAAGCAA GAAGGAGAGTATCGTGGTAAATCTGCATGCAGAGCTGTATAAAGGTTCAGAAGGTGAGGATGGTGGAACATGTTATCTGA TTGTCTTAACAACAAGAAGAGGCACTTTCAAGCTAGACATGGTGGATGATTTCCGTCGTTACAAGACATGGGCCACAACC ATCAATCATATGCTTAGGATTTCCAATTCTTTTGCAAAATATGAGCTTCAATATTACTGAAATTATATTGATCCTATTAA TAAGCACTTATTTACCTTTTTGTATCCATTTGCATCGTTGTAATGTATTGGTAACTATAACATTATGTCGATCATTCCCA CTGTTGAATTCAAACTATTTGCAATCAGTCTTCTGGTGAAAGAAAGTAATTTTACATTTGTCATGTTCTGATATGATAAT TGTCGGCACCAAAAGCACCTGCACATTAGCCTTGAAGGCTTAAAGTCACGCCAAAATTTTCAAAGTGTACAATAACCAT
CDS sequence (LotjaGi4g1v0294400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCTTACATATATTCATATCTGAATTTTCATCCTGTTCAATTCATTTGCAAAATAATTTGTTCTCTGAATGTGAA GATCGTACATCACATTATCATGGCTTCCAATTATAATCTATCCCCTTCAGATGCACATCCTGAGACCATGGATTTTCTTT CACTTGCTTGGTGTGACTTTGCTGTCCAAGCTCTGCAGCCAGAACCACAACATGGATCAGTTGTTCTAGTTGATAATCCT ATGAAGCAGCTAGAGCCTAGTAGCCCCATGATGGAAAAGAGTGCTAGAATGGATGATGCAGATTTCAGGTCTCTACCTTC ATGGAAGTCTAATGATATGAAGTCATGGATATGGATGCAACAAGCCATGCATCCTGAATTGAATTACAATAGCTGTTTCA GAAAGAAATGGATGCCATGGAAGCAGATCATACCATTGAAGAGTGTCTCAATAAAGAAATGGTTTAAAGAAATAAAGCTG AGGAGGAAAGAAGATCAGAGATTGCAAAGAGCAGAGGTGCATGCAGCTATATCTATAGCAGGGGTAGCAGCAGCTCTTGC TGCTATTGCTGCTGAAAATTCCAAAAAAGAGTCCAATGAAGATAGAGATGCAGCAATAGCCTCTGCAACTGCCTTGGTTG CTGCTCAATGTGCAAAAGTAGCTGAAGCAATGGGGGCAAAGAAAGAGCACCTTGGGAGTGTGATTGGCTCAGCCATGAGT GGCACAAGTCCAAGTGATATTCTCACTCTCACTGCTGCAGCTGTAACATCATTAAAAGGAGCAACCACACTTAAAGCAAG ATCAGGATGCAAAAACAGATTGAGTGGGGGAGTCCCCATCTTGCCAATTGAAGACAACAATGATTTGGACTTTGACTTTG AAAAAGGGAGATTGATTCTTTCACAGGGTGCTGAGTTATATGTGGAAACACCAGAAGGGAGGTACATGCCGAGATCTGTG GCAGTAGTTCTAAATGGTGATGCCAAGGTTGTACTTGTGATGAGGAAGCACAATCTATTTAAAAGCAAGAAGGAGAGTAT CGTGGTAAATCTGCATGCAGAGCTGTATAAAGGTTCAGAAGGTGAGGATGGTGGAACATGTTATCTGATTGTCTTAACAA CAAGAAGAGGCACTTTCAAGCTAGACATGGTGGATGATTTCCGTCGTTACAAGACATGGGCCACAACCATCAATCATATG CTTAGGATTTCCAATTCTTTTGCAAAATATGAGCTTCAATATTACTGA
Protein sequence (LotjaGi4g1v0294400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAYIYSYLNFHPVQFICKIICSLNVKIVHHIIMASNYNLSPSDAHPETMDFLSLAWCDFAVQALQPEPQHGSVVLVDNP MKQLEPSSPMMEKSARMDDADFRSLPSWKSNDMKSWIWMQQAMHPELNYNSCFRKKWMPWKQIIPLKSVSIKKWFKEIKL RRKEDQRLQRAEVHAAISIAGVAAALAAIAAENSKKESNEDRDAAIASATALVAAQCAKVAEAMGAKKEHLGSVIGSAMS GTSPSDILTLTAAAVTSLKGATTLKARSGCKNRLSGGVPILPIEDNNDLDFDFEKGRLILSQGAELYVETPEGRYMPRSV AVVLNGDAKVVLVMRKHNLFKSKKESIVVNLHAELYKGSEGEDGGTCYLIVLTTRRGTFKLDMVDDFRRYKTWATTINHM LRISNSFAKYELQYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 170 | 170 | - | – | |
| PANTHER | 34 | 409 | 376 | 1.3E-174 | – | |
| PANTHER | 34 | 409 | 376 | 1.3E-174 | ||
| Pfam | 47 | 285 | 239 | 6.2E-62 | ||
| Phobius | 171 | 191 | 21 | - | – | |
| Phobius | 192 | 415 | 224 | - | – | |
| Pfam | 305 | 404 | 100 | 1.0E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0294400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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