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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0297200 |
| Transcript ID | LotjaGi4g1v0297200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor family protein; TAIR: AT2G24765.1 ADP-ribosylation factor 3; Swiss-Prot: sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1; TrEMBL-Plants: tr|I3S8Z9|I3S8Z9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0297200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67124215..67127793) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATTAGTGTTTACCAGATTGTTTTCCTCCGTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAA TGCCGGCAAAACCACCATTCTCTGTATGCTTCTTACCTCTCTCACCTTCTTCCTCATCCAATTTTTGCAACTTTTCGTAT TAATTTTTTGGATTTCTCTTCAGATCGGCTCCAGATGGGTGAAGTTGTCTCCACCATTCCAAGTTAGTACTCGATCTCGT TTTGCGTTTTCCTTAATTTTCAGTTCGTTTGGCTTTGCATGTTGCCTGATGATTTGTCTTTGGATTTATTTGATTGTTTG ATGCAGCAATTGGGTTTAATGTTGAAACAGTGCAATATAACAACATTAAATTTCAAGTCTGGGATTTAGGTAATGGCTTC ACTCACCTTGATTCATGCAAATCCTGTATATTATAATGTGTGTGATTGATTGTTAAGACATTTGTTTTTCGCCGTTCTTG TTATGCTAGACAAATTCGAAACCAACAATAGGGTCATAGAGATGAACATGTGATCAAAATTTAGTAAATGAGGACTTACA CATCATTTTAATGACTTGTGAGCGAAAAACAGTCTAATGCAATTTTAATTTTGATGGGAGTCTCACTGTCACTAGGGATG AAAGTCGGCCAGCCTAGCTCATGGTCGGCTTGTTAAGAAAGTCTCCCTGTTTTCCTGGCTCAAGCATGTATCACTCTTAG CTCACGAGTTTCTTGGGCTCAAGGAGCCAGGTTCAAATCCTATACAACAACAGACATTGCTTTTTCCCACCAAAATCCTA TACTTTATTATTTTGACTTCAAAAGAGTGGTTAACTATGTAAAAAGGTAAAATCAAATAAGTGTGTGAGTGTCTCACAAG CTATGAAGCTAATACATGGGCCCATGATTTTTACGAGTTATTATTCGATACTATAAGTGCACCACATCACAATATGAGTT GGTATAACTTTGTCCTTCTTGGCCATAAGTAGTTTTATCTATTGGTATTTATCCATTTGATGGAGTGCAAGTGAAGATAA AAATATGTTGAAAACCTAGACGACATTATAATTTTTTTTTCTGTTTCAAGCTATTTTCTTTGATACACACATAGGTCATA TGTTTTGAAAAAAAATAAACACCTTTAATTTAGACTTTCAAACCATAAATATAGTTTATTGTTTACAATCATGTGAGCTT ATGGTTGCTTGAGACTTAAATATTATATGAAATAGGAAGGCTTATTACAATTTGCAATTCTGATATCAAACTTTTGTTTG TACAGGTGGGCAAACAAGTATCAGGTAAGACTTTTGGTTTCATTCATGACTTTTTTTATCCTCCTATTTGACATGAGGAT GCACTAAATGGTCTTATGCTAGCATATGAAGGAATTTCGTCTTAAAATTGTGCCTTCTAGATCTGTTTTTGTTGTTGTAG TCCTTTAACTCTCCCAAATTTCTGTGCACAAGTTATTGTGAAAACCCTGATATGTGTTATTCTAGTAAAAAGATAACCAT CTGTTAGGCCCGTTTTTTAATTTAGAAAGAAACAATACGAGACTGAGATGATAGATAATGGGACAGAAGAGGAGTTAGTT AGGGTCCACAGAGACAAGGATGAGCTAAATGACTAGTATGCTTAGTTAGTATGATTAGTTTGTCCGCAAAGACAGATTTC TCTTTTTTTATTATTGTGTTAAATTCAGTTTCATTCTTGTTGTTTAGCTCAAGAACAATGTACTTCCCCAATATTTGAAC TTTTTAACTTCTCCTTTAGGGATGCTTTGCTATGACTTAACCATCCTATACTTATTTTCTCCATTAGAACAAAAAATGTA TGCAATACGTATGTGCAGCTTAAAAATACACCATTTCAAGGAGTTTCCTTTGTGCATAAATTACATCTCTCACATAATTT TCCTTAAAAAAAACAGAGCAAGCCACGGTGGCAAATGAAACCATCTTGGCTAAACCACAAGATGGGAAAATAAATTTAAT CCTTACTAATATGTAGTCTCCATCAACTTCTCCAATTTTTTTTGGTTTGGTCTTTTTTCCCCTAGGCCATACTGGAGGTG TTACTTTCCAAATACTCAAGCAATAATCTATGTTGTCGATTCAAGTGACACTGATAGGCTTGTGATAGCTAAGGAGGAGT TCCATGCAATTCTGGAGGTATATGTTGTTCCTGATTTGTTTTTCATACACATATGTAAGTATGTATTTATAGTAGTTTTA TTACATTTATGGTATGGGATATTGGCTTTTGTCATCTTATGAATAATTAGATTGAGAAAAACATGAATGTGAATCTGTCA CTGGCAAAAACTTGCACAAAAATATCTAGGTTTGTAAGGAGTGTAAGAATTGCTTACAAGTCATAACATTTATTAATGTA CTCAGTTTGGTTACTTCAAATTTTATTGCAGCTGCTATCATTGGGGATTTGTAGCTCTTGTATCTCTAAAGTATTTGAGT TACATTAAGCTTTAGCAAACACTAATTGGATTAAATAGAGGAATGCTTCTGGTGTTATTTGTGATAAAAAGGTGTCTCTT AAGCTTGGAGGAAAGTTTACATGGTCATAAGACCAACAATTATTTTTAGTTTTGAATACTGGGCAATAAAGTGCCAAACA AGAGCATATAAGTGTTGCAGGGATGAGAATGCTGCAATTGATCATGGATTAATAGTCATAAAAGAAAAGACAAGGTCATG AATGAATGTATTGGAGAGAATGTAGGACTAGCGGCTATTTTGAAAAGATGCCAGAGTTGTGTTTAAGATGGTGTGGATAT GTAAGAAGACCAATCGAAGCCTATTTAGAAGGACTATTAGACGGAAGACAACTCCATAATTAGAGGAAAACCAAGAAAAG TTATTAGTGAAATCATTAAAAATTATTTAGATCTAGCCTCTTTCAAAAATTAGCTTTTGAAATTCGATTGTGTATTTTGA TTCATGTAGTCAATTATACTTAGTTAGACTCGGCTTTGATTGTGGTCATTGAAGGTTGAAGGTTTTGGGCCTACTTTGTT TGAGAAAATACTAATTATTTTCTCTGAATCTTTTTGTCAGGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTTGCAA ACAAACAGGTCAGAATTTGATCTATATTTGTTGGATTCTTATATTGTCACATAAGATGGAGTCAGTTAATATTCACCCAA AGAAAAGGAAACAATGAGTATATAAACAAGTTAGGAAGCTAATATCATTGACAGAAGTCTTTGCTAGAGGACATGGTGCA AAAGGATATACTCAGATTATACTTAATTATTGATTAATCATATGCATAATGATATGGCAAGATGCCAGCTGGATAAGACT GGATTTTTGAAAACTTTATTTATTTTAAATGTTCTCTTTCCACTGTACAGGACCTTCCTGGTGCCCTTGATGATGCTGCA GTGACGGAGGCTCTCGAGTTACACAAGATTAAGAATCGCCAATGGTCAATTTTTAAAACTTCTGCAATAAAAGGCGAAGG GCTTTTTGAGGGCCTGGACTGGTAAGTCAGATAAAACTGAACTCTTTCAGAAGAGTTAA
CDS sequence (LotjaGi4g1v0297200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTAGTGTTTACCAGATTGTTTTCCTCCGTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAA TGCCGGCAAAACCACCATTCTCTATCGGCTCCAGATGGGTGAAGTTGTCTCCACCATTCCAACAATTGGGTTTAATGTTG AAACAGTGCAATATAACAACATTAAATTTCAAGTCTGGGATTTAGGTGGGCAAACAAGTATCAGGCCATACTGGAGGTGT TACTTTCCAAATACTCAAGCAATAATCTATGTTGTCGATTCAAGTGACACTGATAGGCTTGTGATAGCTAAGGAGGAGTT CCATGCAATTCTGGAGGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTTGCAAACAAACAGGACCTTCCTGGTGCCC TTGATGATGCTGCAGTGACGGAGGCTCTCGAGTTACACAAGATTAAGAATCGCCAATGGTCAATTTTTAAAACTTCTGCA ATAAAAGGCGAAGGGCTTTTTGAGGGCCTGGACTGGTAA
Protein sequence (LotjaGi4g1v0297200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC YFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWSIFKTSA IKGEGLFEGLDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 1.2E-114 | – | |
| PANTHER | 1 | 172 | 172 | 1.2E-114 | – | |
| SMART | 1 | 172 | 172 | 1.5E-83 | – | |
| SMART | 1 | 172 | 172 | 2.4E-25 | – | |
| Pfam | 6 | 172 | 167 | 2.7E-75 | ||
| ProSiteProfiles | 11 | 172 | 162 | 22.255 | – | |
| SUPERFAMILY | 14 | 172 | 159 | 3.47E-54 | ||
| TIGRFAM | 16 | 166 | 151 | 1.2E-22 | ||
| Gene3D | 18 | 172 | 155 | 8.8E-66 | – | |
| CDD | 19 | 172 | 154 | 1.21832E-116 | – | |
| PRINTS | 19 | 42 | 24 | 2.3E-21 | ||
| PRINTS | 47 | 71 | 25 | 2.3E-21 | ||
| PRINTS | 74 | 99 | 26 | 2.3E-21 | ||
| PRINTS | 119 | 140 | 22 | 2.3E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0297200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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