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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0297300 |
| Transcript ID | LotjaGi4g1v0297300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xylose isomerase; TAIR: AT5G57655.2 xylose isomerase family protein; Swiss-Prot: sp|Q9FKK7|XYLA_ARATH Xylose isomerase; TrEMBL-Plants: tr|A0A0S3R851|A0A0S3R851_PHAAN Xylose isomerase; Found in the gene: LotjaGi4g1v0297300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67130483..67137464) extracted from Lotus japonicus Gifu genome v1.2.
CAAGTTCATAGACAACCTTACTGGAATTCCAACAGCATGACACGTCAAGTGATATACTCACTTGATATCATTCTTATCCA ATATTTATTATTTGAGCTATATAACATATCAAGAATTCAAATTCATAATGCATAATTCTTAATTTTCGAGATTTCAGGAT CTCATTTTCACCAAATAATCAATTTCCACTCTATATAACAAAATCAAGCTTCTCTTTCAGTTCTCGCTATCTTCTTTGTT CCTGTTGAACAAGCCTCAATTTGTTAAGGTCACACTCTTCCCCGTGCGAATTTGTTACTCTCATCTCTATTTGTTGGGTT TCCTGAAAACGATGATGTTTCTTTTGTGTTATGTTTTGTATTACGCTGTTAATTGATGATCGGTTTTCTCACTCGCAGGG AATTTGCGTGAATCCATGAAAATGAAACCTGGGGAAATATTGCTGCTTCTTCTTTGTTTGAAAGTGTTCATCTATGCAGT GGTACGAGTACAGTTTCCCTGTATATTAATATACGGATTTTTACTTTTGGGGTTACGGATTATCATATGCAAATGCTATT TATTTATTTGTTTTTTTTTCGTGGCATGCAGATTGCTGCTCCTGAGACTTGTCCTGCTAATGATCTTGGTAAATGCGGTG ATTCTGATGAATGGAAAGGGGAATTTTTTCCTGGCATTTCCAAAATCAAATATGAGGTAGACTTGATCATGGAAATTTAT TTCTAACTCATTGTATCCATCATATGAGGGTTATATTGATATATATATATATATATATATATATATTCTGTGCTAAATAA AATTCAATGATATGTACTTTTTCCCCTTTTCATTGTCAATGAGTTTTGTTTTTGGGTTTGTGGAGAAGAGAAGGGAAAAG AATATATGAAGGAGAAGGGAAGGGAGGGGAATGAAGGTTTATTTCATTATTTGGGAGTTTAAAATCCTTAGAACTCCTTC AAATATTGGGAACTTGTAAATGGTGAATGAAAATTAATAGGGGGAGGTTTGGGGTTTACCTGACAATTCCTCATTTTCAT CTACTCAAAACTGATATTAGTGGGGTTGATCTTCTTCAACAGAACTTGTTTTCATGTTTTTGTTCTGGAGCAAGATTTTG GCAATTGGCATAAAAATATTATTTGAGAAATCTTAATAAGCATAGTTCCTCTGTGTCACTTGTATTCAGTAGTTATGTTT CGTGTCACTGGGCGTATATTTATTAGTGCATTATTTGAATTTCAGGGCCCTTCTAGTAAGAATCCACTTTCATTTAAATG GTATAATGCAGAGGAAGAGATCCTTGGGAAGAAAATGAAGGTTCTCATCTATATTCTAAAAAGCTGTCAATTTCATTTCA GCGTTACCTATTGGCTTTTGACTTAACTTTCTTGTATGTCATTGCAGGATTGGTTCAGATTTAGTGTTGCATTTTGGCAT ACATTCCGCGGAACAGGTGGTGACCCATTTGGTGCACCTACCAAACATTGGCCGTGGGAAGATGGTAGCAATTCAGTAAG CATGGCTAAAAGAAGAAGTAAGCTAATATTTGTCTCTCCAACTTGATGTACTTCATATTCAGAGATTTGTATTTGATACA GGGTTACATTTTCTTGATTAACAGTGAGAGCAAATTTTGAGTTCATAAACAAACTTGGGGTCGACTTTTGGTGCTTCCAC GACAGGGATATAGCTCCTGATGGGAAAACTCTTGAGGTGAGTCAATCTTTGAAGTTTCTCAACTTTACATAATTGAAGTA TGAGAGGCAGTTGCATGTGCTTACTCATTTTTTATATCTGGAATATTCAACTATGGTCAGGGTGGAATGTGCTCTCGTGA TTAATGCTTTGCTGCTACCTTTATTAAAGTTTAAATCTTCTTTTTGAGCTTTTGGATTGATCCTGTCGCCTTTTTTCTTA GGAATCAAATTCTAACTTGGACGAAGTGGTGGCCCTTGCTAAAGAACTTCAGACTAAGGTAATTTGACATGAATGAACCA TTTAATGTATATTATTTTCCAGATACATCAGTTTTAAGTTGGAAAAGAAGTACTCTTTTCTTGCAACGTATGCTAAAGCT CAGATCATCAAAGAATTCCTGTTATGGTTTTCCATTTCATATTAAAAAAATGTTCTGAAATGTTATTGAACTTGGGGAAT TCAGGCATTTAAGCTTTTTTAGTCTATGGTGGTTTCTATATGCTGATTGCATGATGGTTTTCTTTTTCCTATCCAGTGTG TTATAGTGTAATGGAATTAAAAAATTAAGGGTTAGAAATTATAATTATATCATATGCCATTGTGTTAACTGTTATGTTAT AAAGTTGGTAAAGAAGGAAAATATGATATGACTTCGTATATTCAAATGTAAACTCTTTTTGTTTTCCCTTTGTGCATATG GTGGATGAAGTGCCTGTTTGGTTTACCGTTAGAAATACAGGAAAATAACACATCCCAATGCTACTTCAATAAAAAGTTCA TCGGGATGTGTTATTTTCTTGTTTTCATACTTTCTAGCAGTAACCCTAACAGACTCTTTAGCATACATTTTTTGCCCAAA GAATATATCAAACAGCCCATAATGTGTTTTGTTATTTTACCATATAGAGTAAAAAGAGCGTTTTATGGGGAACAGCTCAG TTGTTCATGCATCCTCGTTATATGCACGGTGCTGCTACTAGGTAACGTATAAACAATTATCGCATGGCCTGTCTCTTGGG TCCTTATGTCAATTGGGTTCATGACTTACAAAATGAACTGCTTTACAGCTCTGAATTAGGTGTGTATGCATATGCTGCTG CTCAAGTGAAGAAAGCCATTGAGGTATGTTCGTGTGCATGTGAACTATGCTTGTAGTAGCATGAAGTTCGATTATATTTT TAGTACTATTGTTCATTTCTCTGTTTAAAATATATTGCAGGTGACACACTATTTGGGGGGAGAAAATTATGTTTTCTGGG GCGGTCGTGAGGGTTATCAATCTCTTTTGAACACAGATATGGAACGCGAGCTTAATCATTTGGTACGTGAGTCATTCTAT GCTCGGTGTAGTTCTTTGATTGTGGTCCCCTCTTCAGCTCTTGTATAAGTAAACAACTCATACAAAATATCCTTGAATTG AATAAATAATAATCTTATGTCCATTCTACAAGAACAGTAAGAACCTGGCCTTATCCCAAAAACAACCAAGTCTCAATGAA AATGCTAAAAGTATATGTAAGCAAGAACACAGAATGAAGCCTAAAAAATGAACTGATTTTATTGGATGGCTAATATCTTG AATAGAATTTTATCCCTTCATAGTGGTTTATATATAAAAAGAACCTCGGCAATCCATTATTTACACAAAAAATTTGAATA GTTTCGTCCTCTGATTTGAAGTGTTTGTATTGTATCTTTTCTTAATCAATGCTGTTTATTTATTTTGTTGCAGGCTAGTT TTTTTGAAGCTGCTGTTGCATACAAAAAGAAGATTGGATTCAATGGTAACATTCTCTGGAACGCCAACTAGCTTATGGCA CTAAATTATGAAACATAGAAAGAGTAGATAGAGCTGAACCAATCATCTTAATAGCTAAATGATTTGAAGTTAAATTACTA TTTTTTTGTCAATATATGGGCTGCACCAAAATTTGAGTGAAAAATGATTTTTTTTTTCTATTCTTTTTCTTAATAAATAA TTTTTTCTTATGCAATTTCTCTTTCCTAATTGATTTCAGGGACATTTTTAATTGAACCAAAACCACAAGAACCAACAAAA CACCAGTAAGCTTCTTACCTTTATAGTCAATAATTTTACAACACCTGTTCCCTACCTAACAAACTTATATTCATCCAGGT ATGATTGGGATGCCGCAACAACAGCTAATTTCTTGAGAAAATATGGACTTACAGGTAACATTTACTTGTGTTCATCAGCG ATCTCCCCAAGAACTAAAATATGGTGTGATGTCTTTCCACATGAAAGTTTAATGTTGTCAGACATGCAAACTAAAGTTTT GAACAGTATATAACTTCAACTTTTTTTAATGTGCTTAAATAAAGAGCTATGGCATTATTTTCCTTTTTTTTCTGCATTTG ATAAATTTGCTCTAAATGCTGATGTGCAAGTCCTGTGTTGTTTTTTCCTCAATATGGGGTTTAGCTCCTCTAAAGTCAGG AGTGCATTTTATAATAATTGTTCAAAAGGTATCATTGTTGAGATTTCATGAACTTGATAATTTGTCATAGGCATGTATTT TATCACAAAATCAACCATTGATTTTCCAATCGATTACCCTTGAATTTTATCCTTTAAATTGATGGGCCAAATCCCACAAT ATGATGCTGCATTTTCATCTCGAGTCAGAAAATTTTCTTCCTACTTAAATTTAACCAAATTGCCCCTTAATGGAACAATT TTAGCTGAAAGCAGGATGAGTCCTTGCACTATTTTATATACTTAAAATATTTCTCTAATTTCCTTTCTGCCTCATTTTTT CTCTTATAGGGGAATTCAAACTTAACATCGAGTGCAACCATGCCACCCTATCTGGTCACAGGTAAATCTATCATTGTACA TTGCATTTACATGTGGTGTTTGTGATCATACTTCCCTTTAAAATTTGATATTCATTACTGAAGACTGAAAGTCTGAAACT GGGTTTGTTCTTTGTACACTTTTTAATGCCTTTGTAGTTGTCATCATGAGCTTGAAACTGCAAGGATAAATGGGTTGCTG GGTAATATTGATGCAAACACCGGCGACCCTCAAGTTGGTATGTGTGAATCCTCTATAACTTAATAAACAATGTAACTTTT GACATGGAAGGCTTTGTCTTTGCATGGCACAAGATTGGAAGTTGTAATATGATGCTGTTATCTTTACTGCAGGTTGGGAC ACAGATCAGTTTCTTGTAGATATTCAAGAGGCGACAATGATTATGCTCAGTGTTATCAGAAATGTATGAAATTGCTTGTC TCTGCTTGCATCATGAAGTGAAACACTCTTCACCTTAGAATGCAATCTCATCTGATTGGTTTCTGGGCCATCACTTTGTC TTGTTTTTGCCTTTTCCAGGGAGGAATTGCACCAGGTGGATTCAACTTTGATGCGAAATTGTGAGTCCTTCACTATCTTT CTGTACTTTTTCATGTTTGTTTTTTTAATCACAATTTCATTACTGAGAATTGAGAATATTTTAGGCGGAGAGAAAGCACA GATGTTGAAGACTTGTTCATAGCCCACATTGTTGGAATGGATACAATGGCCCGTGGCCTCAGGAATGCTGCAAAGCTGAT TGAGGTGATACCCTGCATCCTCTCTTGCATCAATTTATATTTACATAATTCAAATCAGCTATTTTTTAACCTTTCTTGAT AATCAAACTAACAATTTATCATTATATTTGGATTGAAGGATGGTTCTCTGGCTGAGCTTGTCCGCAAGCGATATTCGAGT TTTGACACAGAAATTGGGGCTCAAATAGAGGTAACGTTCTTCCAATTCTTTTTCTCCTCTATATTTAATGTTTTTGAGAT TAACTTTCTTGGAATGGATGCTGGCATAGGCTGGGAAAGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA GAACCAAAGGTTGCTTCTGCGAAACAGGTAACTCAAAAATATAAATAATTTTTCTGCAACATTAAGGGCCAGCATGTTAA AGGGTACATTTACATCCTGTGGAGAACTTTAAGCATTGACTGTTCTCTTCTTATAACACGACATCTAATGTTTTTATAAC ATCTCATTTCTCACTTATTAAGGAAATATAGGAAAATCATGCTCTTCCGAAGTAATTGTAAGACACGTTTTTCCATTAGG CTAACCGCACTGCTAACTTGAGAATGCATTTTACCTTCTACAAACTTAATGCAAGATTGAAACCCCTTTTTGTAATTAAG CATTGAAGCTCTATATTTGAATACCTGTTAACATTTTAGTCCTCTGGCTGTATTTTCTTACCATTAACTTGCTATGAAAT ATTTCACATAGTTTCTAATTAAATTTTCCATGGTGTGTTGCAGGAGCTAGCTGAGATGATATTCCAGTCTGCCATGTAGA AAGCAGCTACTAGCCGTGTGTGGCTCTGCCACTTTTCTATTTCCTTTTTAGTTAGGTACTTTTCAGCATAGTAGGTTTAT TAATAAATGGAAAATGAGATTAACTTATAGCAGCTTCATTTTCCTTGGAGATGAAACATGTTTGGTGCTGGGTTCCCCAG TTCATGCGAAGCCTGGAGAAGTGCATGTTAGCTTTTGTAAAAAAACGTGACGCATACCTTCCCTGGTCATAAGAAAGAGC ACTGAGCAAGCCAGAATGAACATTTACTTCTACTTTCGCATCTACTCTACTTCCACCTTTGTTCATTATTATTTTCAAGT CTCAACACCTGCAGATAGTACATAGTGAAATTACTGATAGTGCAATCGTGTACGCCATAAGTACATGTTTAGATACCTGT TGAAAAATTGCAGCGAGTCAAAATCATTAGGACAGAAACAACTTTTAGCTCTTCCGGTTGTCTTTTGTGATTTTGGCTAA TCATGGTTTTTTACGGTGTGTCCAAAAGATAAGCACTAAAAGGGATTTGATTTCGCATTCCATCATTGAGATACTTGTAA TAAAAAATTTAAGCCTTTTGAGATGGTATCATGCTTAATCAATTTAAATGAAATATAAAGCAAATGAATACAACTGTTTT TATGCAAGTTTTATGGATCACGGATAGCAATTAATCCAAAATTTGTTGTGCTATGCCATGCAGATTGGAGTCATCATTGG TCGTTGTACTTGTTTTTATTCAAAAGCAAGTAACATAATTTGTTCACTAACAAAAAGCAATTAATAACAAAACAAACGTC AAAAAAAGGGGTAGCATTTTCTTTCTTAAGATTTTTGTATGTGAGCATCAAAAGACATGCACCTGGTTTCTCCACATTGA AAAGAAAACGACGTCCATTTTG
CDS sequence (LotjaGi4g1v0297300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGAAACCTGGGGAAATATTGCTGCTTCTTCTTTGTTTGAAAGTGTTCATCTATGCAGTGATTGCTGCTCCTGA GACTTGTCCTGCTAATGATCTTGGTAAATGCGGTGATTCTGATGAATGGAAAGGGGAATTTTTTCCTGGCATTTCCAAAA TCAAATATGAGGGCCCTTCTAGTAAGAATCCACTTTCATTTAAATGGTATAATGCAGAGGAAGAGATCCTTGGGAAGAAA ATGAAGGATTGGTTCAGATTTAGTGTTGCATTTTGGCATACATTCCGCGGAACAGGTGGTGACCCATTTGGTGCACCTAC CAAACATTGGCCGTGGGAAGATGGTAGCAATTCAGTAAGCATGGCTAAAAGAAGAATGAGAGCAAATTTTGAGTTCATAA ACAAACTTGGGGTCGACTTTTGGTGCTTCCACGACAGGGATATAGCTCCTGATGGGAAAACTCTTGAGGAATCAAATTCT AACTTGGACGAAGTGGTGGCCCTTGCTAAAGAACTTCAGACTAAGAGTAAAAAGAGCGTTTTATGGGGAACAGCTCAGTT GTTCATGCATCCTCGTTATATGCACGGTGCTGCTACTAGCTCTGAATTAGGTGTGTATGCATATGCTGCTGCTCAAGTGA AGAAAGCCATTGAGGTGACACACTATTTGGGGGGAGAAAATTATGTTTTCTGGGGCGGTCGTGAGGGTTATCAATCTCTT TTGAACACAGATATGGAACGCGAGCTTAATCATTTGGCTAGTTTTTTTGAAGCTGCTGTTGCATACAAAAAGAAGATTGG ATTCAATGGGACATTTTTAATTGAACCAAAACCACAAGAACCAACAAAACACCAGTATGATTGGGATGCCGCAACAACAG CTAATTTCTTGAGAAAATATGGACTTACAGGGGAATTCAAACTTAACATCGAGTGCAACCATGCCACCCTATCTGGTCAC AGTTGTCATCATGAGCTTGAAACTGCAAGGATAAATGGGTTGCTGGGTAATATTGATGCAAACACCGGCGACCCTCAAGT TGGTTGGGACACAGATCAGTTTCTTGTAGATATTCAAGAGGCGACAATGATTATGCTCAGTGTTATCAGAAATGGAGGAA TTGCACCAGGTGGATTCAACTTTGATGCGAAATTGCGGAGAGAAAGCACAGATGTTGAAGACTTGTTCATAGCCCACATT GTTGGAATGGATACAATGGCCCGTGGCCTCAGGAATGCTGCAAAGCTGATTGAGGATGGTTCTCTGGCTGAGCTTGTCCG CAAGCGATATTCGAGTTTTGACACAGAAATTGGGGCTCAAATAGAGGCTGGGAAAGCTGACTTTGAACTGCTTGAGAAGA AGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGGAGCTAGCTGAGATGATATTCCAGTCTGCCATGTAG
Protein sequence (LotjaGi4g1v0297300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMKPGEILLLLLCLKVFIYAVIAAPETCPANDLGKCGDSDEWKGEFFPGISKIKYEGPSSKNPLSFKWYNAEEEILGKK MKDWFRFSVAFWHTFRGTGGDPFGAPTKHWPWEDGSNSVSMAKRRMRANFEFINKLGVDFWCFHDRDIAPDGKTLEESNS NLDEVVALAKELQTKSKKSVLWGTAQLFMHPRYMHGAATSSELGVYAYAAAQVKKAIEVTHYLGGENYVFWGGREGYQSL LNTDMERELNHLASFFEAAVAYKKKIGFNGTFLIEPKPQEPTKHQYDWDAATTANFLRKYGLTGEFKLNIECNHATLSGH SCHHELETARINGLLGNIDANTGDPQVGWDTDQFLVDIQEATMIMLSVIRNGGIAPGGFNFDAKLRRESTDVEDLFIAHI VGMDTMARGLRNAAKLIEDGSLAELVRKRYSSFDTEIGAQIEAGKADFELLEKKVKEWGEPKVASAKQELAEMIFQSAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 7 | 479 | 473 | 5.3E-208 | – | |
| PANTHER | 7 | 479 | 473 | 5.3E-208 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 479 | 455 | - | – | |
| Gene3D | 45 | 479 | 435 | 2.1E-205 | – | |
| SUPERFAMILY | 46 | 475 | 430 | 1.55E-160 | ||
| TIGRFAM | 47 | 477 | 431 | 2.2E-211 | ||
| Hamap | 54 | 479 | 426 | 48.649 | ||
| ProSiteProfiles | 78 | 479 | 402 | 172.355 | ||
| PRINTS | 135 | 157 | 23 | 6.6E-84 | ||
| Coils | 155 | 175 | 21 | - | – | |
| PRINTS | 176 | 196 | 21 | 6.6E-84 | ||
| PRINTS | 199 | 218 | 20 | 6.6E-84 | ||
| PRINTS | 223 | 244 | 22 | 6.6E-84 | ||
| PRINTS | 250 | 269 | 20 | 6.6E-84 | ||
| PRINTS | 272 | 296 | 25 | 6.6E-84 | ||
| PRINTS | 314 | 341 | 28 | 6.6E-84 | ||
| PRINTS | 343 | 354 | 12 | 6.6E-84 | ||
| PRINTS | 376 | 387 | 12 | 6.6E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Xylose isomerase activity | Catalysis of the reaction: D-xylose = D-xylulose. |
Expression pattern of LotjaGi4g1v0297300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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