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LotjaGi4g1v0299800.1

Overview

Field Value
Gene ID LotjaGi4g1v0299800
Transcript ID LotjaGi4g1v0299800.1
Lotus japonicus genome version Gifu v1.2
Description Outer mitochondrial membrane protein porin; TAIR: AT5G57490.1 voltage dependent anion channel 4; Swiss-Prot: sp|Q10S27|VDAC6_ORYSJ Mitochondrial outer membrane protein porin 6; TrEMBL-Plants: tr|Q6W2J1|Q6W2J1_LOTJA VDAC3.1; Found in the gene: LotjaGi4g1v0299800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:67383723..67390496) extracted from Lotus japonicus Gifu genome v1.2.

CTCCACGCACCAATAAGATTCTTGGTTTCGGTGCAAGCCAATGGGCCACGTAAGCGTTTGATATGAACCCAAAGCCTGTG TTTCTTCCAGCTTCTACACACTCACATTGAATCTTGCAAGTGCGGCTCTGCTGTCAGCTGCGCCACTGTCAGAGAGACCA CGACCCACCCACTCCTTCCTCTCCTTCCTTTGGCGGCAGCGGCGGCGTTTTCTCCCCTCCTCCGTAAGTAAGATCTTCTT CCCTCTCATTCATGCATCTCGATTTCAAAACCGATCACTCCTTCTCCCACTTTCAAGATTCATTCCCTTCACTCTATCTT CTTTGCATTTGCATACCCGATTTCATCTTATTGATTTCGCTTCTGATTGCGATTATCTCTACCTGAAAGAGCCTCTCTTT CCTTTTTTTCCCATTTGGGTATTTTGTCGAGCACCTGGCGCGCATGAAATCAAAAGATTCGATGTGCATTATTCACATAC TGTAGTTTCTTGTAGCTGATTGGTTATATTGATTTGAGAAGCTGTTGAATAACTTCAATTCACAACTTGGCCCTTAGTTT CATTTGCTCCAGCTTTGTATGCATATGCATTGACTAATATCCCCAGCTAAGGATTATGGTCTCATGTTTTGAAAATGGCA TTGGTGAAATTTAGGATGGCTTTATGAAACATTGAATATTCCCCTTGATAAGTAGAATTCCTATGCATTAATGTAAAAAG TAGAGACAAACCGATGCAGAGATTGAATTGACAAAACAGAATTCTTATTTAAAGATCAATTTAGGATATCTTGATGAAAC ATTGAATACTCCCCCCCTTGATAAATGGAATTCCTATGCATTATTGCTACTAGTAAATTCCGCGGGCATTAACTTTACCG CGCTAATGAGTCCCCTGGTGTTACTCAAAAGCTTTTGCTATGTTTGGTTTCTGTTTTCATTTCTGCCATCTTGTTATCAT TTTATTTCTTGTTTTCAATGTTTTGCACTGCAAAGATTGAAAAGAATGTATTTCTCTACTAACTTTCTAAGTAGATAATT ATGTAAAATAATGTTAGGACCCGAAAATCCTAACGTGGAGAAACGATAGAGAAAATAGGGGAAAAGGGAATATTTTTGGT ATTTTTCTGAATAAAAGACTGATATTAAATAAAAGGGATAATTCGAACTGAGAGGCTGGTTCCTCTTCAGAACCAAGAGG CTGGTTCCTCTTCAATAGGGCTGGTTCCCTTTACAAACTCTATAATCTAATCCATGATTCTAACCTAAGGGGGGTACTCC TATTTATAATAACCTAATCCTAATAAAATAACTTAACCTCTAAAAATAAAGAAGATATCCTAACGACAATATCCTAAAAT ACAATATTAGATCCTAAAATAAAAGATAGAATCCTAAATTAAAATAAATTAAATCCTAATATAATTAATCCTAACAATAA GGTGGGGTTTTATATTTAAAATTGAAAACAAAACCAAACAGCCCTTACTTCATCTTTTTCTGGATCAGTTTACTGTTTAT GCTGCAACACCTATATGGACATAAATGCAGTACTTGCATAAAACACTTGTGTGTGACTGTGTTTGGATATTATCACATTC ACTTAAAAGCACTTTCATTTCAATTAACGGCGAGAAATGAATTTCCATTAAAAGTATGTGTATGTAAGCCTTGCCAACAG AAATGAGCTTTCTTCTCTCATTTCCGTTCAATCGAACCCCACTGAAAACCAAATTCACCTTATTGCTTCAGTTTCACTGA GGATTATCTTGCTTTCCCGATGACTATATTACTAATTACTTGCCAGGAAAGATTGCATTTGCATTTATGCATGTGTTAGC ATGAGGCTTATGATATTTGTTATACTTCTTTCTCTCTTTCTTGTTTTGCATTTTATATCAGTTCCCCCTCCCCCCCCCCC CCCCGGCGGAAATCAACTATTAAAGTAAAAAATGATTGTGGCATCACAGGGTTTGGTGCATTTATCCTGACTCATTATGG CTAATGGTCCAGCGCTGTATCCTGAGATTGGCAAAAGGGCAAGAGGTAAACCTGCATTTGAAATGATAACAATGTGTTCA TTTTCGTATCATTCCTAAAGATGTTCTTATATACATTGTTGAACACACCCATGGTTGCAAGTTGTTTCCTAATTGGACTA TGGAATAATACATTGATTTTCAAATTACAATCGTCACTCATAAGTTAACTTACATAATATGTATCATATATGGTAAATTG CATGGTGTTGTCTGAAACCTATCTTAGCTGACATATCACATCTAAATTTATAATTTTTCAAAATCCTTTTCTGATCATTA CATTGTATGTGGCCGAACTTCTAGATTGCTGGCTTCTTTATATTTCTGATCAAGTCATACCTAAACTAATATTCCTGTTC TTATGCAGACCTCTTGTACAAGGATTATAACTTTGATCAAAAGTTTAACCTGTCAATTCCAAGCTCCACTGGATTGGTAA TGCTTCTCCCGGTTTCTGCTATTATTATCATTATTTTTAATTATTCTTATTAGTTCAGTGTTTAGTTTCTAATTGCTGAT ACAATCCCAACATATGCCGCACTTTATATAATTTCAATAATATGCAAGACAGATAGTGTGATTGTTGATTCCCCCCTGTT TATACACTTCTTTTGACCAGTTATAAAGCATTGACGCGGTTCATTAGAAAATATGAGGATAGGTGCATCCTATTATTCCT TACATAAGGATAAAAGTCTTAGAGTAATAGGGTGTGCTTGAGATTCACATTTTGCAGCCTTCTTGCTTACTTCAAGATGT TTTAAATGGAAAAGCTCGTTTTTACACATTTATCTTTTGAACTTCTCATGAAAAACGTGAATGAAACAATCATGTTCTGT GTGAGAAGACCTGCTTTTACGTTATTATAATGGTATTACAATCATACTCTGACTTACATCCATTTACCCATTTTTTATTA TTCAACTATTAAGCGAATAAAGGCAGAGGGGAAGAATGAATATATTTATATAATGCATAATCAATTAATGTCATTAAGTC CATATATCTGTTCTCCCTGAAATATCAGTATTTGAAATTTTGAATCCATTTTGTCTTTTATTTCTATAATTAAATATCAT ACATTGTGCGATCAATTTAACACTTGGATATCCTAAATGGTTTTTTCTCCAAGGAATCATTGTTTGATCTATTTAAGGTA ATGCATTAAATTTACCAAACACTAGAAGGCATCATGTAAATCTCTAAATAACTAATAGTGTACTGAAAATCATCTCGGTG TCATCTAAACTGTCCCCCCTACTTTTCCTCTTGTAACCAAAAAAAAAACTGTCCCCTTACTCCGTGTATACTGCCAAATA TTGTGTTAGCAGAGAGGACAAATATTTCATTTTCCTTCCTTGATCAAGTCGGTTATATAAATTTGGTATCTTACATTTTT TAATCCATTAATTTTTTATGTATTCTCATTCGAATGAGTGCTACAGGGAATGAATACTCAATGCAACTTCAAACTTGCGT CAATGTTGTATTTTATCAGTGTGAAGTGAAATATGAGCAGGCTTTTGTCTGTCCTATCTATTGTAGCATTGCGCCTGATT TTTCAAAATTTAATTTTCCATTTGGCAGGGCCTTATAGCTACAGGGTTGAAGAAGGATCAAATTTTCATTGGTGACATAA ATACGCTTTACAAGAGTGGGAATCTTACTGTGGATGTGAAAGTTGATACATACTCTAATGTAAGGAATAGCTTTTAGTCA AATGTTCTTCGTTTTGCATATAGATAGTGTTACTGCGACTGCTAGCTTTTTCTTTGACGAGTGATTTAAGCAAAAGTTCA AACTTTCAAAAACTGGTTCAGTTGTATATATAGAGTTAAACTGAAACCGGTAGTTTTTACTTTTTAGTGTGTTGCGTCTT TGAAATTCTTACCATGTTATGAACACTGATATTTTCTCTGATTTACTTCTTCAGGTATCCACAAAAGTGACTTTGAATGA TATCTTCCGTTGTAAAAAAGTAGCTTTGAGCTTCAATATACCTGATCACAAGTCAGGAAAGGTGAGTGTAATCTAGCTTT CCCATTGTGCGATGATGTTAACACTTAACACATGCTTCATAAAACTTAAGAAATGCAGTTTTTTGTTGCTCTTGAACTTA CTTTAAATGTCACCCTTAGTTATCTATCTTCAAAGATTCCGATAAACAAATAAATGACTTCCTTAGAAACTAATCCATAC TAGCAAAGTAATCGATTTTAACAGTTTTCAGCTAAGTAAATTTAGTCAACAGAAGGAACTGAATCCTGTAAGTTATGCTG AATCACAAGTTGATAAGCTAATGCACCTTATCATTATGTTAAAAAAATCATTATTTTCACTGTCTCTTTAATCATGATAA CATGTACCTTTAATTGTGTAATAACTTAATGAATCCTGGAAACAGCCTCTCCAGTGATGGGTTTGTGGCTGCATATATTT GACACTTTCCCCCTTCCAAACGCACAATTGTGGGAGCCTTTGGCATTAGGCCATCCATTTCTAATTTTCTATAGTTGGTA ACATACTACTAACATTTAAGCAATGAGTTTATTTTGGTATTCTGACAATGTATTTGACTATGGAATATTACCTCAGCTGG ATGTGCAGTATCTTCATCCTCATGCAGCCATTGATTCGAGTATTGGCTTGAATCCATCCCCTCAATTGGAGCTTTCAACT GCAATTGGCAGCAAAGATCTTTGTATGGGTGCTGAAGTTGGATTCAATACAACTTCTGCTTCGTTCACAAAATATAATGC TGGAATTACCTTCAATAGACCAGATTTCTCTGCAGCGCTCATGCTGTAAGTGTTGTTCGTACCATATTTCCTGGTTCAGT ATTATATTTAATTTCTTATTATATATTAATGTTTCAATAACCTGCAATTTTATAAATTTTCAACTAGTACCTTAGAAAAC ATAACAGAAGGGCTAGAATACATTTTGGAACTTATCAACATAGCAAAAACTATTATTTTGGCTCCTGTGCATTATTTTTT AAAGTATGATTTGTTGTTTGTATTTTTTAAAAGGAAAACATAAGAGTTATGTTTGGTTCTAACAAATATTTTCTGTTTAT GTTATTACTTACTAAAATGTATCATGTTTTCACGTTATTTCCTATATTATTAATGAAAATAGAAAATGGAAAAAAGCAGA ACATTTTTTTCAAACAAAAAGACGGTAAGTTATCTCCACAGTTGGCAACCTAAAGTTGTGGAGGACAACTAGAGCTTTTT AAGACATAATCTGAACTAACTATAGTGCCCTGAACTGGTTAGTACATAGTAGATTTTATTTCGATAATTTTAAATTTTAT TTAAATTTGTTGAAACCAGCTTTAATCAATGAAAACAAAACACACGCAAATTATCTATATTTAGACCCCTATATATGTTC TGCTTAGTTTCGTAGATAAACAATTTTACAATAAGGTGGAAAATTGAATGATTCCCTTGAAATTTTCTGAGCCCTGGGGT TTTTCAAATTTCAATAGGTAACTATGACTCTTATGAGTCATGAGAATATCGTGGAGGATACACAGGGCAGTTAAAACCTT TGAGATATGACATAGTTTTTAGTGTTTAGTCTTAAAAGTATGATTATGTACTAAATAACGACCATTCTGTTTTCTTTCTT TTTTTCATTTCTTTATTCAACTTTGTTGGGTAGGTAAATTAATTTCTGGAAAATGGATGATATTTTTTATACTCTAGTGT AGACTATATATAACAAAAAGCTAGTATAAATCAGTCACTAATTAAAAGTTGGGTCCTTTTTGGAAACTATTAATATGGCC CTACTAAAGATGGTACATGTGTTACTGAAAATAATGTATAGGAAGGATATCCAAACGTGTATGTATGGAAAGACTAGTGT TTCCTTTTCCATTTTTCAAGTTTCTTGCTTTTGCTTGCAGTTTGTGAAAGATTTGTCTTGATACACAAAAGTTGCAGGAT TTAAGAAATGTGTGTTTTCTGCTTTGATAGGGTTGATAAAGGAAAGTCCCTGAAAGCATCTTACATTCATCATGTGGATC GCCCTGATGGATTTACAGTTGCTGCTGAAATCAATCACAGGTTTTCCTCCTTTGAGAACAGATTTACAATTGGGAGCTCA CAGTTAATAGATCCAAACACAGTTCTCAAGACTCGATTCAGCGATGATGGCAAAGCCGCCTTCCTATGCCAACGAGCATG GAGGCCGAAATCACTTATAACCCTCTCTGCTGAATATGACTCCACCAAGATCTTTGGTTCATCCACCAAGCTCGGTCTTG CCCTCGCTCTCCAGCCTTAACCTGGTCTTCCAATTAAAATCTCATTATTCGCTGACATTCACTTTTGCAATCATCATTAT ACATTGTTTCCAGAACCCATGATGGGTTGTTTTAAAGCCTTGTCATAAAGGTAAAACCAAAGGAATTAGTAACATTTGTG AAATCTGCTAAAGTGGCAGGGAGAAAGAGGACCCAGTTTTGAAATACTTACATAATGGCTAGAGGTTTTTTAGCTAATTC ATAACATTTGATTGTGGCCAAATTGTATTATTTGATAGTGACTCATGGTCAGGTCGGTAGATTGCGGATGCCTGAGGTAT AATTTCATCATTTGTGGGTCTAATATCTATCTATCTATCTAACACTTCATCTACCTAACACTAGGGAATAATACAGACCA TGACAATTTCCAGAGAAAGTTCATTGGTGTGTGCTGAACAGTTGAATGATTACC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0299800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAATGGTCCAGCGCTGTATCCTGAGATTGGCAAAAGGGCAAGAGACCTCTTGTACAAGGATTATAACTTTGATCA AAAGTTTAACCTGTCAATTCCAAGCTCCACTGGATTGGGCCTTATAGCTACAGGGTTGAAGAAGGATCAAATTTTCATTG GTGACATAAATACGCTTTACAAGAGTGGGAATCTTACTGTGGATGTGAAAGTTGATACATACTCTAATGTATCCACAAAA GTGACTTTGAATGATATCTTCCGTTGTAAAAAAGTAGCTTTGAGCTTCAATATACCTGATCACAAGTCAGGAAAGCTGGA TGTGCAGTATCTTCATCCTCATGCAGCCATTGATTCGAGTATTGGCTTGAATCCATCCCCTCAATTGGAGCTTTCAACTG CAATTGGCAGCAAAGATCTTTGTATGGGTGCTGAAGTTGGATTCAATACAACTTCTGCTTCGTTCACAAAATATAATGCT GGAATTACCTTCAATAGACCAGATTTCTCTGCAGCGCTCATGCTGGTTGATAAAGGAAAGTCCCTGAAAGCATCTTACAT TCATCATGTGGATCGCCCTGATGGATTTACAGTTGCTGCTGAAATCAATCACAGGTTTTCCTCCTTTGAGAACAGATTTA CAATTGGGAGCTCACAGTTAATAGATCCAAACACAGTTCTCAAGACTCGATTCAGCGATGATGGCAAAGCCGCCTTCCTA TGCCAACGAGCATGGAGGCCGAAATCACTTATAACCCTCTCTGCTGAATATGACTCCACCAAGATCTTTGGTTCATCCAC CAAGCTCGGTCTTGCCCTCGCTCTCCAGCCTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0299800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANGPALYPEIGKRARDLLYKDYNFDQKFNLSIPSSTGLGLIATGLKKDQIFIGDINTLYKSGNLTVDVKVDTYSNVSTK VTLNDIFRCKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPSPQLELSTAIGSKDLCMGAEVGFNTTSASFTKYNA GITFNRPDFSAALMLVDKGKSLKASYIHHVDRPDGFTVAAEINHRFSSFENRFTIGSSQLIDPNTVLKTRFSDDGKAAFL CQRAWRPKSLITLSAEYDSTKIFGSSTKLGLALALQP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11743:SF27
1 277 277 3.6E-138 –
PANTHER
PTHR11743
1 277 277 3.6E-138
IPR001925
Gene3D
G3DSA:2.40.160.10
3 277 275 8.5E-59
IPR023614
CDD
cd07306
5 276 272 9.64822E-79 –
Pfam
PF01459
5 270 266 1.6E-52
IPR027246

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005741
Cellular component Mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
Subterm of
GO:0008308
Molecular function Voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of
GO:0098656
Biological process Anion transmembrane transport The process in which an anion is transported across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0299800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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