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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0304900 |
| Transcript ID | LotjaGi4g1v0304900.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT2G19160.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|A6WWG6|ISPH_OCHA4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TrEMBL-Plants: tr|A0A0L9TEV1|A0A0L9TEV1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68036017..68040775) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGACAGAAAAAGGCTGGCGTCTAGGCATGGGTGATATGCAGATATTGCCTGGGTCTCGCCACCGTCCTCCCTTGAA GAGGCCAATGTGGATTCTTGTCTTGGTGCTATTTGTATGCGTCTTTCTAATATGTGCTTATATGTACCCGCCACAAAGCA GATCAACCTGTTATATCTTCTCTTCTAGAGGGTGCAAGGGTTTTGTTGATTGGCTTCCACCTATTCCTGCAAGAGAATAC ACAGATGAGGAGATTGCAGCTCGTGTTGTGATTAAGGATATTTTGAGCGCACCGCCAAATGTATCAAAAAAATCAAAAAT TGCCTTCATGTTTTTGTCACCTGGTTCACTGCCATTGGAAAAATTGTGGGACAAGTTTTTTCAAGTAAGAATTGGTTAAT TGGTTACTTGTTTATTTTTATGTCTTCAAGCTTTGGGAGGCTGTTCATGTTCCTTTTTGAAATATATCTGTGGCCCTTGT TTAATCACATAGAATATTAGCAGTTTAATAGTATAATTGATACTCTGCAATTTTTCAACCTTCAATAGAAATGGCTTATG GCGTTCTCATATGACACGAAGAGTTCCTATTGGACTTCACCTGTTTGTTTATTATGAGAGTCTTGTATTAGAAGTGTTTG GTAAAAGAAGGCATTGAGTTGTTGTGACTTGGGAGACTTGGAGGATTTCATTCCTTTTATCTGGAAACTGAATTGGAATG ATTATTGATTAATAAGAGCTGCTTATTCCACCCTATGCTAGCACTATTTTTTGCATGAAATTTTTCTGTGGTCACTATCT GGAAACTGTTGCCTGATTTAACTTATTAGAGTGACCCATAGTTCAGCATTTCACATCATTGCCTTTGATAGCAATGGTTA ACATGGTAGATATTGCAGTTCTTCCAACATGACTCACGTTCTCATTTCCCCGTTGGATAACAAGTGTTCTTTGAAACCAT TGTGACAATGATGTCTTGTCAGCCTTTGGTGCTTGCCTCAAAGTGTTATTTAGTTTTTAGGGTATGGCATTTAAAATTTC CATTGGCATATAATACAACGCAAGATGTGAAATGTGTTCTACTAATAAACTATTCATTAATGAAGTGAAAGAATGGACAT CCTTAGTTTGCTTTTGTAATTTCATTGGTTTTGTACTTTGTTATCTATGCTTCTGAGTCCTGTTCATCTTGTAGTGTGCA TTTACCTTGAAGATGCTCTCCTCCTTTTATGCAGGGTCATGAAGGGAAGTTCTCAGTTTACGTGCATGCATCCAGAACTA AACCAGTTCATGTGAGCCGTTATTTTGTCAATCGGGATATACGTAGTGACCAGGTACATATAGTCTTGTTATTATTCACA GTACTATAGTTTGTAAATTATACTGTTTCATGTTTAAATATGTATCCTCTCTTACTGAAATCATACTTTTAATGTATGTA TCAATTATCATTTTCCTTAGTCTTGTTATTCTCCTGTTAGCCTTTCTTTAATGGAATAACCTCAGAAGTCAGTAAGTTCA ACCTGGGATTGAACTGTGTGAATATGCTCTGTATCTTGAGCAATATTATATCCTATTTTATTTAGTTATTACTTTTTTTA AAAAATTTCTAAATATTTGCTGCAAGTGTTTTTAACTGTTTTAATTCTAATAATAGCAATACTGCTCTCGCAAGTGTGAT TATAATGAACAATCTATAGTTTTCCAATGTGCTGTTCATGTAATCAGAAGTTATCTTGTTGCAGGTGGTGTGGGGGAAAA TTTCTATGGTTGATGCCGAGAGACGACTATTGGCTAATGCCCTTCAAGATCCTGACAACCAGCAATTTGTTTTACTTTCT GATAGGCAAGTGGGTTGAGATTTCTTTTAATTCTGCTCTTGCTGTTTGATTAGTTTCATTAATATGAGATTTGTTTATAT TGTTTTTGCAGCTGTGTGCCTCTATATCATTTTGACTATATTTACAACTATCTGATGAATGCAAATATCAGCTTTGTAGA CTGGTATGTCAAGCACTATTAAATGGGGCCTCCCTCTGGGTTTTTATAGAGTTGATTGGTCTTCTTCTCTCTACTTTTTT GTTTCTAATCCTATGTCCCTTACTAATACAAACTTCCCTTTTTCTTATTAGCTTTAAGGATCCTGGTCCTGTAGGGAATG GCAGGTATTCAGATCACATGTTACCTGAAATTGAGGTCAAGGACTTCAGAAAGGGTGCTCAGGTATTTTCTTATCTGGGG ATTCGATATTTTAAATAGAAAATTTACTTATCATTGTCTGAAGAATGTGTAATTCGAACAAAGTATTTAGGCTACTTTAT TCTACAAACACCCTTTTCACAGGACACCAACAGTATACATGGATGGAAGTTGCCATTTTTCCATAACCATTATGTGTGAT TTCATACTAGCACGTCAATTATAACACATCAGTAATTGAGTGTTTTGCCATGAAAATGTGGTGATGAATTATTTCTCAAT AACAAAAGTAATTATTTTATATTGTATGAAATTCCTTACTCCTATCCTATACCTTTTCGCATCCCCATCTGGCATTTATT CAGTATCACCATACCTATTTTTTTGAGTGTTAGTCCTCTTATCATCTAAGCCTTGGAAGCTCATTTTTATAAATTTGTAG ACCTTTTAGAGATATCTCTCTCTCATTGTTCAACTTCTTCTGCAGTGGTTTTCTATGAAGCGGCAGCATGCTATTATAGT TATGGCTGATAGCCTTTATTACTCGAAATTTCGGACTTACTGTCAGGTGAAGTTCTTTTCAAATATTTTTACCATTAATA TTTAAAGCAATGTTGCTTAATATATTAATTATTTTTCCATAGTTGTTTGTTACTTTGTTGATTCAACCATATTCTTTAAA TTGTCCTAGTCATCAAGCCAAGCTGAGTCTAGTATTTTTTTTTGAGGTTCAAGATGCTTGGCTTATGACTATGTCTCTCA TGCACATCCTAAACAACATATGGATGTTTCATTTTATTACCTCTAATCATGATTTTTTCTTCAATCATTTTTCTCCAATA TGGCTTATGGTTTTTCTACGCATGTTGTGAAAACTTCATGCAAGATTAGGGTACATCTAGTTTGAAAACCATATCTATAT TTGTAAAAAAAAACATATCTGACCTGGACACATATCTATGTGGGTAGTAACATTAATGCTCATAACCTTACTTGCTGGGT ATATATACCAATAGACTTACCCCTTCCACATTTTAGTTAACTTAATTATGATCGCATGGTATTGTGTTTGTTTGACAATC TAGTAAAACATGAATGTTATTATAATACTAACATTAATGGTCTGCAAAGGTAGAGCATTGATTAGAAATACAGAGCTGAC GTGCTGAATGATGATCATCTTGTTTTCCATTGTTGTGACTCACATTATAAGGTGTTGGACCATCTAGTTTCCTTATGATA AATTATAATTTTAATTCCTGATGCACACTGCTGTCCAAACTAGGAAGGAAACACCTATTATCCTAGACAGCACACAGAGC TGATGTGTAAATTATCTATATCTAGTGATATGCCCATGGAACTATGAATTCCCTATTAATGTGAAATTTCTTAATACCAC AGCCTGGTTTCGAGGGACGGAATTGCATTGCTGATGAGCATTACTTGCCGACCTTCTTCCAGGTGAGAATTTCAATTGCA ATACAAATCTTTTTTTAATAACAAGTTTCAAATCTGTGGCTAATTGGCTTATGCCTCTGGTCTAGATCGTTGACCCTGGT GGAATTGCAAATTGGTCCGTAACTCATGTTGACTGGTCTGAGGGAAAATGGCATCCAAAATCATATAGGGCACGGGATGT TACTCCTGAGCTTTTGAAGAACATTACGGTATAGTTCTGCTTAAACTGTAACTTCCACAGCAATCTGTATTTATTATTTT TGTCAAGCATGATAGTATCTTTTAAAATTGCCATTAAAATGCAGTTTTGCTTTGAGCATGATAGTTCTAAATTTATAAGG TTAATGGAAAACTAAGTTTAAAGTAGGAAATTTAAAAGAAAATCCTAAAAGTAGGTGGGGACAGTTAGTGTTTGGCCTTT GTGGTTCATTTGTAATGGCGACTCTCTCCTTTTTTAGTTATAGGAGAACACATTGGACTTTTAGGAAAAGATAAACAGAC ATCAATTTCCATATTAAAAATGCTATTATTATTTAGTGTACTGCTACAGTATACGACTAAGACTATGCACACCAAGCACG ACACTTGTAATCTTAATAACAATTTATGATTTTAAATAAATATAATAAAGCAAATAGTCATTATGTGAAGACAGAACCAG TGTAAATGTACTAAAAGTGCAAGTCGTGCCCATAAAAGGATCATGTCAATCAGCATTACTCTATTGTTTATTATGATTTT AGTTTAGTCTAGTGTAGTGCAACTGTTCAGGTCTCTGCCTTTTCAATTTGTTTTCATGCTAAGTTTCATGGATATTCACA ATAGTTGTTATATTTGCAGTCCGTTGATGTTAGTGTGCACGTCACCAGTGATGAGAAGGTATGTTATAGTCTATATGTGA GCTTTATTGCTCTGTTTTATTGAAAAATGAATTAACCTTCTTGATGAATTATCTTGTGTTTCTACAGAAAGAAGTGCAGA GATGGCCTTGCTTATGGAATGGGGTTAAGAGGCCATGTTACTTATTTGCTAGGAAATTCACTCCTGAAACACTGGATAGT TTGTTGCATCTATATTCCAATTATTCAACTACACCTTGA
CDS sequence (LotjaGi4g1v0304900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACAGAAAAAGGCTGGCGTCTAGGCATGGGTGATATGCAGATATTGCCTGGGTCTCGCCACCGTCCTCCCTTGAA GAGGCCAATGTGGATTCTTGTCTTGGTGCTATTTGTATGCGTCTTTCTAATATGTGCTTATATGTACCCGCCACAAAGCA GATCAACCTGTTATATCTTCTCTTCTAGAGGGTGCAAGGGTTTTGTTGATTGGCTTCCACCTATTCCTGCAAGAGAATAC ACAGATGAGGAGATTGCAGCTCGTGTTGTGATTAAGGATATTTTGAGCGCACCGCCAAATGTATCAAAAAAATCAAAAAT TGCCTTCATGTTTTTGTCACCTGGTTCACTGCCATTGGAAAAATTGTGGGACAAGTTTTTTCAAGGTCATGAAGGGAAGT TCTCAGTTTACGTGCATGCATCCAGAACTAAACCAGTTCATGTGAGCCGTTATTTTGTCAATCGGGATATACGTAGTGAC CAGGTGGTGTGGGGGAAAATTTCTATGGTTGATGCCGAGAGACGACTATTGGCTAATGCCCTTCAAGATCCTGACAACCA GCAATTTGTTTTACTTTCTGATAGCTGTGTGCCTCTATATCATTTTGACTATATTTACAACTATCTGATGAATGCAAATA TCAGCTTTGTAGACTGCTTTAAGGATCCTGGTCCTGTAGGGAATGGCAGGTATTCAGATCACATGTTACCTGAAATTGAG GTCAAGGACTTCAGAAAGGGTGCTCAGTGGTTTTCTATGAAGCGGCAGCATGCTATTATAGTTATGGCTGATAGCCTTTA TTACTCGAAATTTCGGACTTACTGTCAGCCTGGTTTCGAGGGACGGAATTGCATTGCTGATGAGCATTACTTGCCGACCT TCTTCCAGTCCGTTGATGTTAGTGTGCACGTCACCAGTGATGAGAAGAAAGAAGTGCAGAGATGGCCTTGCTTATGGAAT GGGGTTAAGAGGCCATGTTACTTATTTGCTAGGAAATTCACTCCTGAAACACTGGATAGTTTGTTGCATCTATATTCCAA TTATTCAACTACACCTTGA
Protein sequence (LotjaGi4g1v0304900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTEKGWRLGMGDMQILPGSRHRPPLKRPMWILVLVLFVCVFLICAYMYPPQSRSTCYIFSSRGCKGFVDWLPPIPAREY TDEEIAARVVIKDILSAPPNVSKKSKIAFMFLSPGSLPLEKLWDKFFQGHEGKFSVYVHASRTKPVHVSRYFVNRDIRSD QVVWGKISMVDAERRLLANALQDPDNQQFVLLSDSCVPLYHFDYIYNYLMNANISFVDCFKDPGPVGNGRYSDHMLPEIE VKDFRKGAQWFSMKRQHAIIVMADSLYYSKFRTYCQPGFEGRNCIADEHYLPTFFQSVDVSVHVTSDEKKEVQRWPCLWN GVKRPCYLFARKFTPETLDSLLHLYSNYSTTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 20 | 299 | 280 | 1.1E-169 | – | |
| PANTHER | 20 | 299 | 280 | 1.1E-169 | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| TMHMM | 31 | 50 | 20 | - | – | |
| Phobius | 50 | 352 | 303 | - | – | |
| Pfam | 107 | 308 | 202 | 1.7E-68 | ||
| PANTHER | 297 | 349 | 53 | 1.1E-169 | – | |
| PANTHER | 297 | 349 | 53 | 1.1E-169 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0304900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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