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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0307700 |
| Transcript ID | LotjaGi4g1v0307700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G31550.1 WRKY DNA-binding protein 11; Swiss-Prot: sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11; TrEMBL-Plants: tr|I1LVK7|I1LVK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0307700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68367642..68369792) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCATGCAAATAATTAAATTAATAAATAAAGTCCAACCAATTAATTATCTACCATTTAATTGATTTGACTTTTCTCT TCTCCCACTCTCTTTTATAAACCACTTCCTCAACACAAACAAACACAAACCAAAACCAAAACTTCTTGTTCTTGTTCTTC TTCTTCAACCATGAAGATGGAAGAGCAAATCGCTATTCAAGAAGCTGCTTCTGTTGGTTTGAAAAGCATGGAGCATCTCA TTCGGATTCTCTCTTCTCAAACCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCCATAACCGCCACCGTCTT GATCTCAATAACCTTGACTGCACCGAAATCACTGACTTCACTGTCTCAAAGTTCAAGCAAGTCATCAATCTGTTGAACCG TACCGGCCACGCGCGCTTCCGTCAAGCGCCGTCGCCTTCCCCTGCTCCTCCTCCTCCTCTGTCTCAGCCTCAACCTGAGA AATTCAACAGCCACCAATTCAACAACCACCATCGGTCAACGACTCTTGATTTTGCTAAACCTGTAATGGTCAAGTCAAAT CTAAAACCAGATCTAATTTCTAAGCCAAAACTGTCCACTGATTTGTCGGTTTCTCAATACTCCACCACCACCACCAACTC CTCCTTCATGTCCTCCATCACCGGAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCCGGCAGGC CACCTCTCTCGTCTTCTCACCGGAAAAGGTGTCACGACGCCACCCTCACCGGAAAAACCTCATCCTCCGGTAGCCGCTGC CATTGCTCCAAGAAAAAGTAATTTAATCAAATAATTTTTCAGATCCATTCCTTCAACAAAAAATAAAAAGAATAGAAAAT TGATGATTGAATTTTTCTGGTTATTTTTCAGGAAATTGCGTGTGAAACGAACGATTCGAGTCCCGGCGATAAGTTCAAAG ACTGCTGATATTCCAACAGATGATTTCCAATGGAGAAAATATGGTCAGAAACCGATCAAGGGATCACCCTATCCACGGTA AATATTTTCAATCTTGATGAATTGGTCAAAGTCAAACATCAATCTCAAAGCATTTTGAATAATACTAATTGAATGGAAAT GAGTAGTAGTTTATTGATTTGATTTGGTTTTTGTTGCAGGGGATACTACAAATGTAGCAGTGAGAAAGGGTGTCCGGCGA GGAAGCATGTGGAGAGAGCGCAGGATGATCCTAACATGCTCATCGTTACCTATGAGGGAGAGCACCGGCACCTGATAACC ACCACCGCCGCCGTTGGTTTTATGGCCTGAGAATAGATCGGAGATTCCGAGGAAGACAAGTATAGGCAAAGTCAACTTTT GCTTTGTGAGATGTGACTTTTGTGGACAAAAGGAAAGAGGAATAGTCGTCTACAAGTTGATGATAAGAAATTAATCAAGG ACTTTAATGTAAATTTTGACCAAAAAAATTAGAATGAAATATACAAGTTTTGTTTTTGTGGTTGGAAATTGGAATTGGAA TTTTTATATATTTATTTATTTATTTATTTATTTATTGTGTTGGGTTGTTTTTAAAGGAAAAGTATAGATTCGATGGACAG GGTAGGGAGGGTACTAGGGTAGGATAGGTTTGAAGGGAAAAGTCAAAGGCCGGATTTGCCACCTTATTCCAAATCTTTGC TCTTGTTCGCCCTATCATGATTCGTGACAGCAATAACTAAACAAGAACATATCTTTACCTTTAATTTATTTTAAGAAAAT GTCTTATTCATTAAGAAGAATCTATATGCTAATAAATCCGGACAAGAGAAGAGAGTCCTAATTAAACCACATAACATTAT TCAAACGAAAATAAAGTCTTGTTAGGAGTAATCAGCAATACAATTCCCCTTTCTTCCAAGATGATTCGTTAATTACATGT CAAGCTTTTATCCGTTTCTTCGCCTTACATCAAATTAAACCACATATGCTCCATCACTCGTACGTTGCCTAGTATCCTTC GCTTATCATATTTGATCTCCCAGCTTAGCTTTCCTCTCTCAGTAATAGTAACAGTGTAGGTCCAACACGCATTTGACCAC CCATAAAAGGGTTTTTAGGCCTCAAACAGTTGAAGGCAATTAGTTTTAATGCACATCTTCTTAAAACAAAG
CDS sequence (LotjaGi4g1v0307700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGGAAGAGCAAATCGCTATTCAAGAAGCTGCTTCTGTTGGTTTGAAAAGCATGGAGCATCTCATTCGGATTCT CTCTTCTCAAACCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCCATAACCGCCACCGTCTTGATCTCAATA ACCTTGACTGCACCGAAATCACTGACTTCACTGTCTCAAAGTTCAAGCAAGTCATCAATCTGTTGAACCGTACCGGCCAC GCGCGCTTCCGTCAAGCGCCGTCGCCTTCCCCTGCTCCTCCTCCTCCTCTGTCTCAGCCTCAACCTGAGAAATTCAACAG CCACCAATTCAACAACCACCATCGGTCAACGACTCTTGATTTTGCTAAACCTGTAATGGTCAAGTCAAATCTAAAACCAG ATCTAATTTCTAAGCCAAAACTGTCCACTGATTTGTCGGTTTCTCAATACTCCACCACCACCACCAACTCCTCCTTCATG TCCTCCATCACCGGAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCCGGCAGGCCACCTCTCTC GTCTTCTCACCGGAAAAGGTGTCACGACGCCACCCTCACCGGAAAAACCTCATCCTCCGGTAGCCGCTGCCATTGCTCCA AGAAAAAGAAATTGCGTGTGAAACGAACGATTCGAGTCCCGGCGATAAGTTCAAAGACTGCTGATATTCCAACAGATGAT TTCCAATGGAGAAAATATGGTCAGAAACCGATCAAGGGATCACCCTATCCACGGGGATACTACAAATGTAGCAGTGAGAA AGGGTGTCCGGCGAGGAAGCATGTGGAGAGAGCGCAGGATGATCCTAACATGCTCATCGTTACCTATGAGGGAGAGCACC GGCACCTGATAACCACCACCGCCGCCGTTGGTTTTATGGCCTGA
Protein sequence (LotjaGi4g1v0307700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMEEQIAIQEAASVGLKSMEHLIRILSSQTPSSSSSSSSSSSSHNRHRLDLNNLDCTEITDFTVSKFKQVINLLNRTGH ARFRQAPSPSPAPPPPLSQPQPEKFNSHQFNNHHRSTTLDFAKPVMVKSNLKPDLISKPKLSTDLSVSQYSTTTTNSSFM SSITGEGSVSNGKIGLAIVAAGRPPLSSSHRKRCHDATLTGKTSSSGSRCHCSKKKKLRVKRTIRVPAISSKTADIPTDD FQWRKYGQKPIKGSPYPRGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRHLITTTAAVGFMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 303 | 299 | 4.5E-114 | – | |
| PANTHER | 5 | 303 | 299 | 4.5E-114 | – | |
| MobiDBLite | 28 | 48 | 21 | - | – | |
| MobiDBLite | 28 | 49 | 22 | - | – | |
| MobiDBLite | 82 | 111 | 30 | - | – | |
| MobiDBLite | 87 | 101 | 15 | - | – | |
| Pfam | 191 | 235 | 45 | 5.7E-18 | ||
| Gene3D | 222 | 298 | 77 | 2.4E-30 | ||
| ProSiteProfiles | 232 | 298 | 67 | 30.871 | ||
| SUPERFAMILY | 233 | 295 | 63 | 1.1E-26 | ||
| SMART | 237 | 297 | 61 | 3.8E-38 | ||
| Pfam | 239 | 295 | 57 | 3.0E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0307700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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