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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0308800 |
| Transcript ID | LotjaGi4g1v0308800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan endotransglucosylase/hydrolase; TAIR: AT4G25810.1 xyloglucan endotransglycosylase 6; Swiss-Prot: sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23; TrEMBL-Plants: tr|I3T593|I3T593_LOTJA Xyloglucan endotransglucosylase/hydrolase; Found in the gene: LotjaGi4g1v0308800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68463220..68466750) extracted from Lotus japonicus Gifu genome v1.2.
TGTCCATTAATTCAGAAACTATTAACCAAAACAAGACCACCATAACTCAGACAGCTGCCATCTGATATGAAGTTTAAAAG CCAATCAATACTTTCAAAAAATTTGGTTTTGGATACTTTCAAATTTTTTGGTTTTGAACCAAAATTTGTTAACACATTGG GATATATATCAACCCTCATAGCTGTCATGGTCCCCACACTCAAATTGTTCCTCACCAAAGACAAGTCAATCCATATCTCT CAGCTATTCTACACGTTTGTAAAAATTTCTCAACCACTTCCACCACCTCCAAACCCCAATCACCCTTTCTCATTCATAAA GATCATGATTGCCTCCTCTTAATGCACTCACTATATATATAGTTCCATTTCTTTGCATGCAACTCAGTCCTCATCATCAA ATATTTCTTAGTTTTATTAAAACCAAAACATAGGACCACTATTTGTCTGAAATGGCAAGTAAGATACTCATTGGCCTTCT TTTCACAACCTTTGTGATAGCTGCCTCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAA TCCTCAACGATGGACAGCTTCTCACCCTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGATCCAGAAACGAGTACTTG TTCGGAAAAATTGACATGCAACTTAAGCTCGTACCCGGTAACTCCGCAGGCACCGTTACAGCCTATTATGTAAGCATCCT TCTCTGCATGCGTCTCTTTAATCAGAATCAATTCTGAAACTTTGAAGCTATTGCTTTTCTCTACAACTGAATCATAATCA ATAGTAAAAAGGTTTCTAAACATGTTTTCTTATACATTAACTGTTTTCTTAATCATAATCAATGGTAAAAAGGTTTCTAA ACATGTTTTCTTATACATCAAATGAATTGGTTAGATAATAACTATACATATCTTTGCCTTTGATTGCTGCAGCTATCTTC TGCTGATTGGGACACCCACGATGAAATAGATTTTGAATTTCTGGGAAACTTAAGTGGTGATCCTTATATTCTTCATACAA ATGTATTCACACAAGGGAAGGGAAACAGAGAACAGCAGTTCTACCTGTGGTTCGACCCCACCAAGGATTTTCACACATAT TCCGTTCTTTGGAATCCTCAGAGCATCATGTATGCACACCTCTTGTCTGTCTTATTTGTAGGACCTACTTCACTAATTGA AATGAATAACTATAAAGTCCAAAATAAAAGGATAGCGATTTAGACCCGGGTGAGATTGACATTCAATCGATATCTGTGTA TTCCAAGGGTTTTGGACCGCCAGTAATGTGCAGTGTCAGATAAACCGCTACGGAAAATTAATTTTCGGAATGTATTTTCG AAAACACATTCCAAAAATTACTTTCCGATAGTTGTTTTTTAACTAAACATTATGGACAGTTTTAGAACGCTAAAATCAAC ATATGTCGATTGAATGTCAACACCATGCAAGAGTTTAGAAATCATTTTCCTAAATAAAGTAACGTGCAAATAACTTCATA TATCTAATCATTTATTAAAATTTATCATCGGCTTATGAAAATAGGTTTAAAACAGCTTATAAGTCATTGATTATTTTGAT AAATTCATCAAAATACTTGTATAAGCATATACTTCCAAATGTGACCTAATTTTATTTCAGTGTTATCAATTTTGAAAAAT AGCTATAACAAGAAGATATATCTCTTAATGATTAACCCTTTTTTTTTCTCATATCAGATTCTCTGTGGATGGGACACCCA TAAGGCAGTTTAATAATTTGGAATCAAAAGGAGTGGCTTTTCCTAAAAAACAAGCCATGAGGATATTTTCTAGCCTTTGG AATGCTGATGATTGGGCCACAAGGGGAGGTTTGGTGAAGACAGATTGGAGTCAAGCCCCATTCACTGCCTCATATAAAAG TTTCAATGCCCAAGCTTGTGTTTGGACTTCTTCTGGCTCATCTTGCTCTTCCAACCAAGATTCATGGATGAAAGAGTCAC TTGATTCAACAGGGCAAGCTAGGATTCAATGGGTGCAGAAGAACTACATGATTTATAACTACTGCACTGATACTAAGCGC TTCCCACAAGGCTTCCCTCCTGAATGCTCAATTGCATGAAAATAAAAGGAAATTATGTCATGTTGTTAAACCCTCATAGC CCATAAGTTATTCTTTTTTTTCCTGTGTGTAAATTAATAAATAAAAAACTAAGACCTCTATTTACACTTCCCAGTATACT TTATCCCGTCCATTGCCTATAAAACAGAATGTGAATGAGATTCAATGTAATTTTGGTCATCTATAATTTTATTGGAGAAA GTTATAGATAAAAAAATAATTGTGTACTAAAGTGTGTCATGGGTAAAGTTTATCTTCAAGCTGGTCATATTTAATTGGTT TGATTTGTTTTCTTAAAAAACATTCAGTCAATCCAACCAAACTGATCCTATTAAAATAATTGGGTTCTGTGGTATAAGAA TCAATCATTAAATATTTATCTGCATATATTATATTTTCTGTACAAATTTTGAATTCTATGTTACTATCTATAAGTACCTT CAAAATGTTACTATAAGTAAAAAAAGAAAACTAATTCTTTGCTAATTTCACACATATAATCAAACCAATTTGACTTGATA TTAACTTTTTGTAACTACAATTTTCCAACTGTCTTCTGAGGCAGATGAAACAAATAAAGTGTTTATAATCTCTGAGAGTT TAACTCAGAGTTAATGTAGTAAGGTATAATAAAAACTTGAAGAATCAGTTACAGAGTATTCCATCTGTACAAGATATTAA AGATGGTAAGCAATAAATTGTTTCTCAGCAAACATATATTTGCAATTTGTACCAGCAATGCAAACGTATACTCAAACGGG AGCTGAGACACTCATTGTCACTCTATTTGTTAAACAATAGACTGAAAGGTACCGTACCTTCTCTTTCTGTAAGGGTGCCG GAGCAACGCCCTAATTATTATTATCATTAAAAGGAGCCCATCTTGAAACAGCTTGCTTCCATATAAGATCAGCATACTCC GGATGATCAACAAAAGGATTTCGATTATGCTGATAATATTTGCATATTCTTTCATTTCTTAGTTTCTCTTCCCTTGAAGG TGGATCAGCTTCATTCCATTTTAATAATGTGGAAAGCAGCCCCATCTCCCTATTTTCTGTGGTGAAGAGATAATACTATT TTCAACATGAAGGTATAACAAATTGAAAGTTACAACAGATGTAATGAAAGCTGTAGTGTCAACTAGTTTCGAAACCATAA GAATCAATTAGAGAATTTCCAAGGACAGTATTTGATTAAACACAAGCACCACGGTTACTTTATACACAATTTATCTGAAG CCAAAACAGAGTTGCAATACACCAAAGAATAACAAACTAACTGAGGCTGTTTGTTTGTTTTTTAGTTGGGAATGACCCCA ATGTACCAAAAGATAATCTTTAGAAAGAAAAAAGAACAAACGCCCACTGAGCAATCTTTAGCTTTAGCCTTTAACCTAGC GTCAACATTTG
CDS sequence (LotjaGi4g1v0308800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGTAAGATACTCATTGGCCTTCTTTTCACAACCTTTGTGATAGCTGCCTCTGGTAACTTCAACCAAGACTTTGA GATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACGATGGACAGCTTCTCACCCTGTCCCTAGACAAGGCCTCTGGCT CTGGATTTCGATCCAGAAACGAGTACTTGTTCGGAAAAATTGACATGCAACTTAAGCTCGTACCCGGTAACTCCGCAGGC ACCGTTACAGCCTATTATCTATCTTCTGCTGATTGGGACACCCACGATGAAATAGATTTTGAATTTCTGGGAAACTTAAG TGGTGATCCTTATATTCTTCATACAAATGTATTCACACAAGGGAAGGGAAACAGAGAACAGCAGTTCTACCTGTGGTTCG ACCCCACCAAGGATTTTCACACATATTCCGTTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATA AGGCAGTTTAATAATTTGGAATCAAAAGGAGTGGCTTTTCCTAAAAAACAAGCCATGAGGATATTTTCTAGCCTTTGGAA TGCTGATGATTGGGCCACAAGGGGAGGTTTGGTGAAGACAGATTGGAGTCAAGCCCCATTCACTGCCTCATATAAAAGTT TCAATGCCCAAGCTTGTGTTTGGACTTCTTCTGGCTCATCTTGCTCTTCCAACCAAGATTCATGGATGAAAGAGTCACTT GATTCAACAGGGCAAGCTAGGATTCAATGGGTGCAGAAGAACTACATGATTTATAACTACTGCACTGATACTAAGCGCTT CCCACAAGGCTTCCCTCCTGAATGCTCAATTGCATGA
Protein sequence (LotjaGi4g1v0308800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKILIGLLFTTFVIAASGNFNQDFEITWGDGRAKILNDGQLLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAG TVTAYYLSSADWDTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSVLWNPQSIIFSVDGTPI RQFNNLESKGVAFPKKQAMRIFSSLWNADDWATRGGLVKTDWSQAPFTASYKSFNAQACVWTSSGSSCSSNQDSWMKESL DSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PIRSF | 2 | 278 | 277 | 1.9E-118 | ||
| PANTHER | 4 | 277 | 274 | 1.2E-165 | – | |
| PANTHER | 4 | 277 | 274 | 1.2E-165 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Gene3D | 9 | 278 | 270 | 1.4E-105 | – | |
| ProSiteProfiles | 16 | 211 | 196 | 29.057 | ||
| Phobius | 17 | 20 | 4 | - | – | |
| CDD | 17 | 275 | 259 | 5.96222E-158 | – | |
| SUPERFAMILY | 21 | 277 | 257 | 1.17E-84 | ||
| Phobius | 21 | 278 | 258 | - | – | |
| Pfam | 23 | 203 | 181 | 7.5E-63 | ||
| PRINTS | 54 | 72 | 19 | 1.7E-5 | ||
| ProSitePatterns | 97 | 107 | 11 | - | ||
| PRINTS | 113 | 126 | 14 | 1.7E-5 | ||
| PRINTS | 131 | 148 | 18 | 1.7E-5 | ||
| Pfam | 231 | 275 | 45 | 1.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Cellular component | Cell wall | The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Cellular glucan metabolic process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. | ||
| Biological process | Xyloglucan metabolic process | The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. | ||
| Molecular function | Xyloglucan:xyloglucosyl transferase activity | Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. | ||
| Biological process | Cell wall biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
Expression pattern of LotjaGi4g1v0308800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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