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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0310600 |
| Transcript ID | LotjaGi4g1v0310600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleosome assembly protein 1-like 1; TAIR: AT2G19480.3 nucleosome assembly protein 1;2; Swiss-Prot: sp|Q70Z17|NAP1C_TOBAC Nucleosome assembly protein 1;3; TrEMBL-Plants: tr|I1MSG1|I1MSG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0310600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68679843..68683496) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGTATTGAATACATACATAATTTTTTGTTTTGGTTAAAAACATGAAGGAGGTTAGGCTGATTGGGCCCCCATAAAAC ATTCCAGGGACAAGTCTTCTTCCTGAAAACAAAAAAAATTCAGAAACCATGAAAAAGGAAGTAGCCCTTTCTTTTCTTCA AAATAAAAAAAGAGGAAAACCTAGGCAATAAATAGAGAAGGTGTCACGCATTACGAAAAGGAGGGAGAGATAGAAGAGCA TACAAAAACCCTCTTTACTCTTTTCTCTTCTTCTCATCCTTCTAGGGTTTTAGCTTCATCCTCTTCGTTCTCTTTCTCTC GTATCCGCAATGAGCAACGACAGAGACACCTTCAACATTTCTGATCTCACCTCTGGTACTCAATTACTGCGTTTTTCATC TTCAATTTCATTGTTGATTCATTGTTTATATATTGATTTTGATTTTTTGTTTCTTCTGGTGTAGCTCTCAATGAGGAGAA CAAAGCAGACCTTGTCAATGCTCTCAAGGTCAGTATCTTCTTCACTATTACTCTACTTTGATCTTCAATTTGTGTTTATT TTCAATGAATTTTAGATTAAGATTTGGATTTCTCATGTTTTATTTGCTATTTGCTTCATTGATTTGATTTGTTGCTGTTT TTTTTTTTGAATGCGTAATTTGATCAGAGCAAGATTCAAAGTCTTGCTGGGCAGCACTCTGATATTCTAGAGTCCCTTTC ACCAGTTGTCAGAAAGAGAGTTGACATTCTCAGAGAGATCCAGGTATATTTTAAGTTCCTTGGATCTCTTCAATTTTTTG TGTTGTGATTATATTTTCTATGTTTTGTGTCTTTTTTTCTCATTTTAATTTGGATGATACTATTTGTATTTGTAAAATGT TGTCATATACATACATATAATATAAGTAATTGATACATGTCAATTTATTACATATAGATGAAGATAACATTGTTATGTTT TGGACCGTCGTCCTTCGTATTCGTATTTGTTGTGTGTTTGTTTTTGTCTATTAGCTCTTCATTTTTTTTCCTGATCTTAC AGGGTCAACATGATGAATTAGAGGCAAGTTTTTTTGAGGAGAGAGCAGCACTTGAGGCAAAATACCAAAAGCTGTATCAA CCTCTTTACAGCAAGGTAATATTAGCTAGTTGGTCTTTCAATGTCATAAGCTATGGCTGGAATGTGTAGCATGGTTTAGT TGCATATTTTTCTCCTTCCAGCATGCTTTATTCTTTTAATCAGTTTTATGACTTAAAAATCATGACCGTGTATTTTGTTT TATACTAATGTATACGTAATATCTTCGCCTTTAAGTTTTAACTTATCATGACTGGATGCAGCGCTATGACATTGTCACTG GTGTTGCGGAAGTTGAAGGAGTGGAAAAGGAAACCTCCCCTGATACAGAAGAGAGTAAAGGTAATATTTGGAAATATCTC TTCTTCCCTTTGTCAGCTTTTGCTTTTTTTTTTTTATAGCTAATTCAACTCTCTACTTGTATAGAGAAAGGAGTGCCTGA CTTTTGGCTCACTGCAATGAAGAATAATGAAGTGTTAGCTGAGGAGGTTCGTCAACTTGTGTTCAACAATTAACTTTTTT TCATCTATGTTTATATAAATTTTGCAACCTAGTTTCATGTTGAGTTATCCTCTCATTGCTTCCTGACAAAATAGATTTCG GAGCGTGATGAAGCTGCTCTCAAGTATCTCAAAGATATCAAGTGGTTCAGGGTAGAAGACCCGAAAGGATTCAAGCTTGA GTTTTACTTTGATACCAATCCTTATTTCACAAATACTGTCTTGACTAAAACATACCACATGATTGATGAGGATGAACCTA TATTGGAGAAGGCAATTGGGTATGCTGTTCTTTTTTGCCATTGATGTTACCACTGTTTGTTGTCATGTTAGTTTACAATC ATGTTAATAGGGGTTGTTTTTTTCTTGAATAAATTGTTTGCTGCTTTTTTCTTGTAGGACCGACATTCAATGGCACCCAG GCAAATGTTTGACACAGAAGATTCTTAAGAAAAAACCTAAGAAAGGTTCAAAGAATGCTAAGCCAATTACCAAAACTGAA GACTGTGAAAGTTTCTTCAATTTTTTCAGTCCACCACAAGTTCCTGAAGAAGATGAAGACATCGATGAAGATATGGTATT GATGACCTTTTTTATGAACATAATAGTAGAAACAAAATTATGGAAGTAGTTATTTAGGATTTTTATACTACTGCTGTACA GAAAACAAGTTGTTTGCAAAAAGTAATTAATTTTTTTTAACAGGCTGAGGAACTTCAGAATCAGATGGAGCAAGACTATG ATATTGGGTGAGTGTTGTTCTTCTTATTTTTGTTAAACACTCCATCCTTGACTTTTGAATGTATTTTGATGGATTGTCTG ATACTTGTTTAGGTCGACAATAAAAGACAAGATAATTCCCCATGCTGTATCATGGTTTACTGGGGAGGCCAATCAGGGAG AGGAGTTTGGAGAATTGGATGAGGATGAAGATGACGATGATGATGATGAAGAGGAGGACGATGAAGAAGATGAGGATGAT GATGAGGAGGATGAGGAAGATGAGGAAGAAAGCAAGCCTAAAACGGAGGTATAGTATCTTAGTTGCCTTGCAGTGCTGAA ACTCTAATTTTTTTCTGAGGTTTGAATCTGAATGAATCTTTTTCCTTTTTTTCGGTTCTTGACCTCTCCTATGGCGACAA TTTCAAATTTTGCTCCAGTCATCTGCACATAAGGTAAGATATTCTGATTTGTGATCTAAGTGTAGTGGTATATGTTACTG ATACATAGATATGTGATCTTACTCTTGATATTATTTTTCTTTTTAATTTGTTGGACTGAAATTGACATGCATGATTGATT TCTATGTATATCTTCAGAAGGGTGGAAGAGCTCAGCTTGGTGATGGTCCTCAGGGTGAGCGACCTCCAGAGTGCAAGCAG CAGTAGAAGTTCATTAACGCAGAGGGTGAACCATGCAATTGAGTTTCATTTGTGTTGGAGAATGTCTGAAGAGAAAGTGG GATTCATGTGGTTTTTGTTTGCTCAATTCAATTTTTTTTACCAAAATCTTAGTAGTCTAAAATTTAAATCCCTTTTCTCC TATTTTGCGCCAGTTTGGGGAGAATGTCGTTATTTATATAGGTAGGATGCTGTGTTTGCCATTTTGCTTGAATTTGTATG TGGTCTCGTATACTTGAAATATATATTTGGTGGTGCCTCTTCACTTGGTGCTTTCTCATTGCTGTTATCGGCTTCATCAA AGCTGTCCTATTAAGAAATCACGGATCAGCTTTGTTTTGTAAGTCTATTAAATTAAATTTGAAGTATTTAAGCGAATTGA CATTAATTCTTTAATTTATAATGTTCCAGGCTTTATTTATCCAGTTGCGTAATATCTAGTCATGTCATGCTATGGTGTTA TTTGATTTGGTGAAGGGTGTAAGTAAGTAGGTTGTATGGGGTTACAAGTTTTAAGTAACTTCCTTTTATTTTCTTGTAAC CCCATACATGGGCATGAAACTAATGAAATTAATTTGCTTATTGACTGACGTGTTATTTATTCAACGTGTAGAAACGTTGA TAATTTGTAATTTTATTTTTTGTCTACGGTATTGGTATATTGTAAATTTGTTAT
CDS sequence (LotjaGi4g1v0310600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAACGACAGAGACACCTTCAACATTTCTGATCTCACCTCTGCTCTCAATGAGGAGAACAAAGCAGACCTTGTCAA TGCTCTCAAGAGCAAGATTCAAAGTCTTGCTGGGCAGCACTCTGATATTCTAGAGTCCCTTTCACCAGTTGTCAGAAAGA GAGTTGACATTCTCAGAGAGATCCAGGGTCAACATGATGAATTAGAGGCAAGTTTTTTTGAGGAGAGAGCAGCACTTGAG GCAAAATACCAAAAGCTGTATCAACCTCTTTACAGCAAGCGCTATGACATTGTCACTGGTGTTGCGGAAGTTGAAGGAGT GGAAAAGGAAACCTCCCCTGATACAGAAGAGAGTAAAGAGAAAGGAGTGCCTGACTTTTGGCTCACTGCAATGAAGAATA ATGAAGTGTTAGCTGAGGAGATTTCGGAGCGTGATGAAGCTGCTCTCAAGTATCTCAAAGATATCAAGTGGTTCAGGGTA GAAGACCCGAAAGGATTCAAGCTTGAGTTTTACTTTGATACCAATCCTTATTTCACAAATACTGTCTTGACTAAAACATA CCACATGATTGATGAGGATGAACCTATATTGGAGAAGGCAATTGGGACCGACATTCAATGGCACCCAGGCAAATGTTTGA CACAGAAGATTCTTAAGAAAAAACCTAAGAAAGGTTCAAAGAATGCTAAGCCAATTACCAAAACTGAAGACTGTGAAAGT TTCTTCAATTTTTTCAGTCCACCACAAGTTCCTGAAGAAGATGAAGACATCGATGAAGATATGGCTGAGGAACTTCAGAA TCAGATGGAGCAAGACTATGATATTGGGTCGACAATAAAAGACAAGATAATTCCCCATGCTGTATCATGGTTTACTGGGG AGGCCAATCAGGGAGAGGAGTTTGGAGAATTGGATGAGGATGAAGATGACGATGATGATGATGAAGAGGAGGACGATGAA GAAGATGAGGATGATGATGAGGAGGATGAGGAAGATGAGGAAGAAAGCAAGCCTAAAACGGAGTCATCTGCACATAAGAA GGGTGGAAGAGCTCAGCTTGGTGATGGTCCTCAGGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAG
Protein sequence (LotjaGi4g1v0310600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNDRDTFNISDLTSALNEENKADLVNALKSKIQSLAGQHSDILESLSPVVRKRVDILREIQGQHDELEASFFEERAALE AKYQKLYQPLYSKRYDIVTGVAEVEGVEKETSPDTEESKEKGVPDFWLTAMKNNEVLAEEISERDEAALKYLKDIKWFRV EDPKGFKLEFYFDTNPYFTNTVLTKTYHMIDEDEPILEKAIGTDIQWHPGKCLTQKILKKKPKKGSKNAKPITKTEDCES FFNFFSPPQVPEEDEDIDEDMAEELQNQMEQDYDIGSTIKDKIIPHAVSWFTGEANQGEEFGELDEDEDDDDDDEEEDDE EDEDDDEEDEEDEEESKPKTESSAHKKGGRAQLGDGPQGERPPECKQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 341 | 341 | 1.3E-176 | – | |
| PANTHER | 1 | 341 | 341 | 1.3E-176 | ||
| SUPERFAMILY | 30 | 313 | 284 | 8.11E-85 | ||
| Pfam | 53 | 294 | 242 | 7.2E-85 | ||
| Gene3D | 118 | 295 | 178 | 7.2E-68 | – | |
| MobiDBLite | 294 | 368 | 75 | - | – | |
| MobiDBLite | 299 | 336 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
Expression pattern of LotjaGi4g1v0310600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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