Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0311700 |
| Transcript ID | LotjaGi4g1v0311700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9UYE2|A0A0L9UYE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0311700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68805405..68807209) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCTTCAGCCCCCAATTCCAACGTGTTTTCAACTTTTTCATTTTAAAACGCGTTCAGACAAAAAAACAAACACGTTCC TCATCTTCCCCAAAAATCACTGTCCTAGTCAAATGGTCAAAGCTACCGCGTTCACATCTCCGTACACGCTTCTTCACCAT CCTTTTTCTCTTCCTTTCCCAATATGTATAAAACCACACTCACCACTTTCTCTCATTCATCACCAAATTCTTCACCGTTC ACACATGGAAATTCAAGACTACTCCTTCTTATTCACAGATATGGATTTCAATTTCGGCGTCAACAACCCCACCACTAAGA AAACTCACCAAAACAACGACCCAGAATGGAACCTCAACGACACCGTTTTAAACGACTTACTCACTTCCTTCATTCACTTC GATGACACCAAGCCACACCAACAACTAATGGATCCAAATCCAATTGCAAACCAGTCCCACATCGAACAGTTCGAACCAGA GTTCGATGAGCCACCAACCAAAAAACCCCGCCGCTCCGACGGAACCGCCACCACCCCGCCGCGGCGTTTATGGGTGAAGG ACCGGTCCAAGGATTGGTGGGAGCGCTGCAGCCACCCTGACTTCCCGGAAGAGGAGTTCCGGCGGTCTTTCCGGATGAGC AAAGCCACATTCGAGATGATCTGCAGAGAGCTCGACTCGGCGGTGACCAAGAAGAACACCATGCTCCGTGAAGCAATCCC CGTCCGCCAGCGCGTCGCCGTCTGCATATGGAGGCTTGCCACCGGAGACCCTCTCCGGCTAGTTGCAAAGCGGTTCGGTT TAGGAATCTCAACCTGTCATAAGCTGGTTTTGGAGGTTTGTTCCGCTATTAAAACAGTTCTCATGCCGAAGTTTCTCCGG TGGCCGGATGAAGCCGCCATGACAGCGGCGAAGAGCGAGTTTGAAGCGCTCTCCGGGATACCGAATATTGGTGGAGCAAT GTACACCACTCACATTCCGATTATAGCGCCGAAGAACAATGTTGCTGCTTATTTCAACAAGAGGCACACTCAGAGGAATC AGAAGACTTCTTACTCTGTTACGGTTCAAGGGATTGTTGATTCGAGAGGTGTTTTCACTGATGTTTGCATTGGTTGGCCT GGCTCTCACCCTGATGAACAGGTTTTGGAGAAGAGTGCTCTGTTTCAGAGAGCAAGCAGGGGAAGTTTGAAGGATGTTTG GGTTGTGGGAAACTCAGGGCACCCTCTAATGGAAGGGGTTCTGGTTCCTTATACTCACCAGAATCTTACCTGGACGCAGC ACGCGTTTAACGAGAAAGTTGATGAGATTCAGGGGCTTGCTAAGGATGCATTTGGCAGGTTGAAAGGGAGGTGGTCTTGC TTGCAGAAGAGGACTGAGGGGAAGCTTGAGGATTTGCCTGGAGTTCTTGGTGCTTGTTGTGTTTTGCATAATATTTGTGA GATGAATAATGAGAAGGTGGATCCTGATTGGAAGTTTGATGTTTTTGATGATGAGATGGTGGCGGAGAATGGTGTGCGCT CTGTTTCTGCAGAGCAGGCTAGGGATCACATGGCACATGATTTGTTGCATCGTGGCCGTGCTGGAACAACTTTTTTCTAG CAGTTCTGTTTTGTGAGATGATACTGAAACTGTTGTTATGTACTGTGATTTTGTAATTCTTTTGGCTATGGTTTATTGTG ATAGTCACATTAGGGAATAAGATTGTAATGTTAGTCATGAGTATATGTAATATAAGTCAATTCAATGTGTATAGAGATTT GTGGCTCAACCATACTATTAATGAATTCTTGAATTTTCTCAGCTG
CDS sequence (LotjaGi4g1v0311700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAAAGCTACCGCGTTCACATCTCCGTACACGCTTCTTCACCATCCTTTTTCTCTTCCTTTCCCAATATGTATAAA ACCACACTCACCACTTTCTCTCATTCATCACCAAATTCTTCACCGTTCACACATGGAAATTCAAGACTACTCCTTCTTAT TCACAGATATGGATTTCAATTTCGGCGTCAACAACCCCACCACTAAGAAAACTCACCAAAACAACGACCCAGAATGGAAC CTCAACGACACCGTTTTAAACGACTTACTCACTTCCTTCATTCACTTCGATGACACCAAGCCACACCAACAACTAATGGA TCCAAATCCAATTGCAAACCAGTCCCACATCGAACAGTTCGAACCAGAGTTCGATGAGCCACCAACCAAAAAACCCCGCC GCTCCGACGGAACCGCCACCACCCCGCCGCGGCGTTTATGGGTGAAGGACCGGTCCAAGGATTGGTGGGAGCGCTGCAGC CACCCTGACTTCCCGGAAGAGGAGTTCCGGCGGTCTTTCCGGATGAGCAAAGCCACATTCGAGATGATCTGCAGAGAGCT CGACTCGGCGGTGACCAAGAAGAACACCATGCTCCGTGAAGCAATCCCCGTCCGCCAGCGCGTCGCCGTCTGCATATGGA GGCTTGCCACCGGAGACCCTCTCCGGCTAGTTGCAAAGCGGTTCGGTTTAGGAATCTCAACCTGTCATAAGCTGGTTTTG GAGGTTTGTTCCGCTATTAAAACAGTTCTCATGCCGAAGTTTCTCCGGTGGCCGGATGAAGCCGCCATGACAGCGGCGAA GAGCGAGTTTGAAGCGCTCTCCGGGATACCGAATATTGGTGGAGCAATGTACACCACTCACATTCCGATTATAGCGCCGA AGAACAATGTTGCTGCTTATTTCAACAAGAGGCACACTCAGAGGAATCAGAAGACTTCTTACTCTGTTACGGTTCAAGGG ATTGTTGATTCGAGAGGTGTTTTCACTGATGTTTGCATTGGTTGGCCTGGCTCTCACCCTGATGAACAGGTTTTGGAGAA GAGTGCTCTGTTTCAGAGAGCAAGCAGGGGAAGTTTGAAGGATGTTTGGGTTGTGGGAAACTCAGGGCACCCTCTAATGG AAGGGGTTCTGGTTCCTTATACTCACCAGAATCTTACCTGGACGCAGCACGCGTTTAACGAGAAAGTTGATGAGATTCAG GGGCTTGCTAAGGATGCATTTGGCAGGTTGAAAGGGAGGTGGTCTTGCTTGCAGAAGAGGACTGAGGGGAAGCTTGAGGA TTTGCCTGGAGTTCTTGGTGCTTGTTGTGTTTTGCATAATATTTGTGAGATGAATAATGAGAAGGTGGATCCTGATTGGA AGTTTGATGTTTTTGATGATGAGATGGTGGCGGAGAATGGTGTGCGCTCTGTTTCTGCAGAGCAGGCTAGGGATCACATG GCACATGATTTGTTGCATCGTGGCCGTGCTGGAACAACTTTTTTCTAG
Protein sequence (LotjaGi4g1v0311700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKATAFTSPYTLLHHPFSLPFPICIKPHSPLSLIHHQILHRSHMEIQDYSFLFTDMDFNFGVNNPTTKKTHQNNDPEWN LNDTVLNDLLTSFIHFDDTKPHQQLMDPNPIANQSHIEQFEPEFDEPPTKKPRRSDGTATTPPRRLWVKDRSKDWWERCS HPDFPEEEFRRSFRMSKATFEMICRELDSAVTKKNTMLREAIPVRQRVAVCIWRLATGDPLRLVAKRFGLGISTCHKLVL EVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSGIPNIGGAMYTTHIPIIAPKNNVAAYFNKRHTQRNQKTSYSVTVQG IVDSRGVFTDVCIGWPGSHPDEQVLEKSALFQRASRGSLKDVWVVGNSGHPLMEGVLVPYTHQNLTWTQHAFNEKVDEIQ GLAKDAFGRLKGRWSCLQKRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGVRSVSAEQARDHM AHDLLHRGRAGTTFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 122 | 144 | 23 | - | – | |
| PANTHER | 139 | 485 | 347 | 4.3E-216 | – | |
| PANTHER | 139 | 485 | 347 | 4.3E-216 | – | |
| Pfam | 284 | 440 | 157 | 8.0E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0311700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…