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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0312800 |
| Transcript ID | LotjaGi4g1v0312800.5 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosylmethionine synthase; TAIR: AT1G02500.1 S-adenosylmethionine synthetase 1; Swiss-Prot: sp|P43280|METK1_SOLLC S-adenosylmethionine synthase 1; TrEMBL-Plants: tr|A0A097GX09|A0A097GX09_ROBPS S-adenosylmethionine synthase; Found in the gene: LotjaGi4g1v0312800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68956311..68957730) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTGGGAGATGTTACGTACCTGTATTTGGATTTTTCTCATTTTTTTACAATCTCTGAAATTCATGCATGATGGTGTTT TTGTTCTTGTGTATGAGTTTAGGTACTGGTTTGATTTGTGTTTGGATTTCAACTTGAGATACATGAAATCATGATTGTAT TTGTTTGTATTTGCATCAATGTCAAACCATACAAACATGCAGTTATTGTAGTTGAATTTTGGTTGTGTGATTCTGCAGAT GGCGGCGGAGACTTTCCTATTCACTTCTGAGTCAGTGAACGAGGGGCACCCTGACAAGCTCTGTGACCAGATCTCTGATG CTGTGCTGGATGCATGCCTGGAGCAGGACCCTGATAGCAAGGTTGCATGTGAGACTTGCACCAAGACCAACTTGGTCATG GTCTTTGGAGAGATCACCACCAAGGCCATTGTTGACTATGAGAAAATTGTGCGTGACACCTGCAGGAAAATTGGGTTTGT TTCAGCTGATGTTGGACTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAGAGTCCTGATATTGCTCAGG GTGTGCATGGCCATTTGACCAAGAGGCCTGAGGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCTACCGAT GAGACCCCTGAGCTGATGCCTCTGAGCCATGTCCTTGCTACCAAGCTTGGTGCTCGCCTAACTGAGGTTCGCAAGAATGG AACCTGCGCTTGGCTGAGACCTGATGGTAAGACCCAAGTCACTGTGGAGTATTACAATGACAATGGTGCTATGGTTCCTG TTCGCGTCCACACTGTTCTCATCTCAACCCAGCATGATGAGACTGTCACTAACGATGAAATTGCTGCTGATTTGAAAGAG CATGTGATCAAGCCTGTGATTCCTGAGAAGTATCTTGATGAGAAGACCATCTTCCACCTGAACCCTTCTGGCCGTTTTGT CATTGGTGGTCCTCATGGTGATGCTGGTCTCACTGGGAGGAAGATCATCATTGACACTTATGGTGGATGGGGTGCTCATG GTGGTGGTGCTTTCTCAGGGAAGGACCCAACTAAGGTTGATAGGAGTGGGGCTTACATTGTGAGGCAAGCTGCTAAGAGC ATTGTTGCTGTTGGACTTGCAAGGAGGTGCCTTGTCCAGGTTTCCTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTT TGTTGACACTTATGGTACTGGGAAGATCCCTGATAAGGAGATTCTGAAGATTGTGAAGGAGGAGTTTGATTTCAGGCCTG GTATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGCAACAACAGGTTCTTGAAGACTGCTGCTTATGGACATTTTGGA AGGGATGATGCTGACTTCACATGGGAAGTGGTGAAGCCTCTGAAGTGGGAGAAGGCTTAA
CDS sequence (LotjaGi4g1v0312800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACGTACCTGTATTTGGATTTTTCTCATTTTTTTACAATCTCTGAAATTCATGCATGATGGTATGGCGGCGGAGAC TTTCCTATTCACTTCTGAGTCAGTGAACGAGGGGCACCCTGACAAGCTCTGTGACCAGATCTCTGATGCTGTGCTGGATG CATGCCTGGAGCAGGACCCTGATAGCAAGGTTGCATGTGAGACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGAGAG ATCACCACCAAGGCCATTGTTGACTATGAGAAAATTGTGCGTGACACCTGCAGGAAAATTGGGTTTGTTTCAGCTGATGT TGGACTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAGAGTCCTGATATTGCTCAGGGTGTGCATGGCC ATTTGACCAAGAGGCCTGAGGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCTACCGATGAGACCCCTGAG CTGATGCCTCTGAGCCATGTCCTTGCTACCAAGCTTGGTGCTCGCCTAACTGAGGTTCGCAAGAATGGAACCTGCGCTTG GCTGAGACCTGATGGTAAGACCCAAGTCACTGTGGAGTATTACAATGACAATGGTGCTATGGTTCCTGTTCGCGTCCACA CTGTTCTCATCTCAACCCAGCATGATGAGACTGTCACTAACGATGAAATTGCTGCTGATTTGAAAGAGCATGTGATCAAG CCTGTGATTCCTGAGAAGTATCTTGATGAGAAGACCATCTTCCACCTGAACCCTTCTGGCCGTTTTGTCATTGGTGGTCC TCATGGTGATGCTGGTCTCACTGGGAGGAAGATCATCATTGACACTTATGGTGGATGGGGTGCTCATGGTGGTGGTGCTT TCTCAGGGAAGGACCCAACTAAGGTTGATAGGAGTGGGGCTTACATTGTGAGGCAAGCTGCTAAGAGCATTGTTGCTGTT GGACTTGCAAGGAGGTGCCTTGTCCAGGTTTCCTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACTTA TGGTACTGGGAAGATCCCTGATAAGGAGATTCTGAAGATTGTGAAGGAGGAGTTTGATTTCAGGCCTGGTATGATCTCCA TCAACCTTGATCTCAAGAGGGGTGGCAACAACAGGTTCTTGAAGACTGCTGCTTATGGACATTTTGGAAGGGATGATGCT GACTTCACATGGGAAGTGGTGAAGCCTCTGAAGTGGGAGAAGGCTTAA
Protein sequence (LotjaGi4g1v0312800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRTCIWIFLIFLQSLKFMHDGMAAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMVFGE ITTKAIVDYEKIVRDTCRKIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPE LMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIK PVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAV GLARRCLVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKEEFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDA DFTWEVVKPLKWEKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| PIRSF | 22 | 415 | 394 | 2.4E-163 | ||
| Phobius | 25 | 415 | 391 | - | – | |
| PANTHER | 26 | 414 | 389 | 7.3E-273 | ||
| PANTHER | 26 | 414 | 389 | 7.3E-273 | – | |
| Hamap | 26 | 414 | 389 | 49.993 | ||
| SUPERFAMILY | 27 | 133 | 107 | 2.79E-47 | ||
| Pfam | 28 | 125 | 98 | 1.6E-42 | ||
| TIGRFAM | 29 | 410 | 382 | 7.4E-166 | ||
| CDD | 29 | 408 | 380 | 0.0 | – | |
| Gene3D | 29 | 264 | 236 | 5.1E-170 | – | |
| Gene3D | 35 | 301 | 267 | 5.1E-170 | – | |
| Gene3D | 126 | 406 | 281 | 5.1E-170 | – | |
| SUPERFAMILY | 139 | 263 | 125 | 5.49E-53 | ||
| Pfam | 141 | 262 | 122 | 2.1E-47 | ||
| ProSitePatterns | 143 | 153 | 11 | - | ||
| Pfam | 264 | 405 | 142 | 8.0E-62 | ||
| SUPERFAMILY | 264 | 412 | 149 | 2.83E-61 | ||
| ProSitePatterns | 290 | 298 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methionine adenosyltransferase activity | Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | S-adenosylmethionine biosynthetic process | The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. |
Expression pattern of LotjaGi4g1v0312800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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