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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0317400 |
| Transcript ID | LotjaGi4g1v0317400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G17600.1 indole-3-acetic acid inducible 31; Swiss-Prot: sp|Q8H174|IAA31_ARATH Auxin-responsive protein IAA31; TrEMBL-Plants: tr|I1LYD6|I1LYD6_SOYBN Auxin-induced protein; Found in the gene: LotjaGi4g1v0317400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69491462..69494655) extracted from Lotus japonicus Gifu genome v1.2.
CATGGCAAATCAAAAACCAACGAGACTCTCAGAATGTTTCTCACTTGGCTTTGCTTTTGCTTCATCATTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATCTACTTTTATATCTCTCTATATA AGGTGCCCATCAGTTCAAGGTGGCGGCTTTTTCTTGTGATCAGTTTCATTGATTGGAAGATATGAGAGCCTTAGAACAAT TTGATGCTTCTCAAACCCAGTCATCATCTTCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTGTGACACCACCA CCACCACCCTCTCCCTCTTCATCTCTCTGCCTCTCTAGTGTCTGCAGAAGAAACAGAACAGATTTGAGCACTGACTTGAA ACTTGGTCTCAGTATCTCTCATTCTTCTCAATCAGAGTCAGCATTCAATTCAACACCACCAAGGTGCACCATTGCTACCT CCCTCCCTCCCTCTCTCTCAATTGTACTTTTCTTAAGCTAAGATGTTTGTGTCAGTTTTTCTTTGCTCATAGCCAATTCT AGAACTCAAAAGCAAATGACATAAGTTTCTTCCCAAAATTGATTATAACTTTAAAATCAATTGTAGAAGGATTTTCAAAC TCTATATTTTGATGGAATTGTGTCCCTTATTTTACAATTGATTTCAAGGACATAATTAATTATCGTGAGTAGTTTCTGAG TTTCAGAATTGATTTTAGGAAAGAAAAACTGATCCAAACATGCTATAATGGAATTGTTTGTGTCCCTTGATCTTGATACT ATTATTTGCTTAGAACATGTTTATGCATGTGTGATTAGTTGCATTAACTTTGTTAATTCTATCTTTCAGGGAGGAAACAT TTGACTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTGGTTGAGAAACAAAACCATCGGAGCCAGACACCTTCTTTG TTTGTCAAAGTCTACATGGAAGGAATCCCCATTGGTAGAAAACTAAACCTGTTGGAACATCATAGCTATGATGGGCTTGT AAAATCCCTTGGCCACATGTTTAGGACCATCATTCTCTGTAAGCAATGAAATTGAAACCCTTTATAACATCATTAATTTC CTTTAGTAACTTCTTTCTTTTAGACCACCATATTTTAATATCAAATTTGTTTTTTCAGGTCCTAACTCTCAACCAAACAA CTCTGGGAATTTTCATGTGCTGACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCTTGGGAGTAAG TGATAAATCCCTCAAATTGAACTCTTAAATTAAGTGTTGTTAACTTAACTCTTCAATCAGCTACATTTTTTTTAGTATTT TGATCATTTTGTATTCTATACAGGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGATGCTAATT TTTCAATAATGCATTCAATCTCTGACTACACAAGCTCCACCTCAATTTTCAATGTTCATAAATTTTTACTAGTTATTAGT TAGAGGCTGAGAGGTTGGGCAAAACCAGTAGAAATTCCACAGAAAAAACAATGGCTTCCATGATTATCATTTATCATAGC TACATACACACAACAATATAGACATGAGTTTAGAGTCTCATATTGTTTAAGAATGAGTCAATTGATAACAATGTAAGAAA TGAGACACACGTATGCGGTGTTTTAAAGTCTTAAAATTTTGAGTAAAGATGAAGTGTATGATTCTCTTACTATAATCTCT TTTTTGTCAAATTAGTGCAAGCTCTCCTGCTGTAAATTCTCAATTCAGTCCATAGCATAGCTACAGTGTTTATTCTCTGA GTTTTTTTTGGTGGGAATGGGATCTAACAAATTTCCACCTTGTTTTGGAACTATGCCAATTATATTGTAGTCATTTGGTA TTTTGCTTTACCCTTTTAGCAATCTTACCTACAATGCATAGCTGTGGTGTTTTTTTTTTTGTGTCTTTCTTTTATGACAG TGTACTCAAAAAGTTGGAAGCTTGGTTTGGATCCAGCTCAATTATTTTGGTGGAAATTTTGTCTATTACATCTTCCTTTA ATGAGCCATACCTACTAGTTGAAATACCAAATACTCAATCCCTTATGTTAGCTCAAAATTTATCTAAGCAAATAATAGTT AAACAATGAAAAGCAGGTATCATTTCCCTAATTTCCCTAGATGCGTCTTTTTGTGCTGTTTCTGCTTTGATGTGCCTTAC TTTGTGGGTACAACATAATGCTTATGGTGTCCACACCCCTCGTGTCAACAACAGTGGTTTTGCTTTCATTGTCATCATGA TAGTGAGGAAGATTCTAACTATGTGTCCAACAGAGAATAGATATGAACTATTAGAGCATCTCCAACGCTGGTTTCTTAGA CCAGGTGGAGATGCTAAGAAACCGTTTCTTATTTTTTGCAGCATTGGAGCATGCCTTGTTGGCACTTTTAATATCTTAGC AACAGTGCAGAGTTCCTTACACAAGGAACTCTGCTTTTTGGTTTCTTAGATTAAAAAATGATATTTTATCTCACTTGCTT CAACAGATTGCTTCAGATTTCAGAGGGAAAGAAACAGAATGAAGGAAGATGAAAGAAGATGAACAACAGAACACCAAAAC AACAAACAAAATTCAAACTTTAAAATAAAAATTATTACTTTACAATAAAAATTAAAACTTTACACTCAATCTCCTGATAT TTACATGAAAAAAAAAAATAAAGGAGAGGGAGCAAAGTGAGCAGCAAAAATTAAAGCTTAGACCACCGATCAAGCACCTT GCATGTCTGATCCAGAAGCTTGAGGGGCGATCTGGGTCTTGATTGAAGCTTTGGTGGCGGCTGGGGTAGGTTTATGTTGC GGTGGTGGGTGTTTGGTGGTGGTGAGGTGGGTTTCGATGGTTGTGAGGTGGGTTTTGGTGGCGGTGGATGTTGCATCGTG GCCGGTGGTGAGTGTTTGTTGGCGGTGGAGGTTGTTTGTTGGCGGTGGTGGGTGTTTGTTGGCGGTGGAGGTTGTATGTT GCGGTGGTGGGTGTTTGTTGGCGGTGGAGGTTGTTTGGAGGGGCTTTAGAGGCGTGGAAGGGGGCTGCGGCTAGGGTTGG AGGCGTGGAAGGGAGAGAGCTTGAGGAAGAAGAAGGTGAAGGAGAGAGCTTGAGGGTTAGGAGGAAGGAGAAGG
CDS sequence (LotjaGi4g1v0317400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCCTTAGAACAATTTGATGCTTCTCAAACCCAGTCATCATCTTCTTCATCTTCTTCCATTGATAGCAACAACCA CCCTTCTGTGACACCACCACCACCACCCTCTCCCTCTTCATCTCTCTGCCTCTCTAGTGTCTGCAGAAGAAACAGAACAG ATTTGAGCACTGACTTGAAACTTGGTCTCAGTATCTCTCATTCTTCTCAATCAGAGTCAGCATTCAATTCAACACCACCA AGGGAGGAAACATTTGACTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTGGTTGAGAAACAAAACCATCGGAGCCA GACACCTTCTTTGTTTGTCAAAGTCTACATGGAAGGAATCCCCATTGGTAGAAAACTAAACCTGTTGGAACATCATAGCT ATGATGGGCTTGTAAAATCCCTTGGCCACATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCAAACAACTCTGGG AATTTTCATGTGCTGACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTCTTGAC CAGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGATGCTAA
Protein sequence (LotjaGi4g1v0317400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRALEQFDASQTQSSSSSSSSIDSNNHPSVTPPPPPSPSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAFNSTPP REETFDWPPIKSTLRSTLVEKQNHRSQTPSLFVKVYMEGIPIGRKLNLLEHHSYDGLVKSLGHMFRTIILCPNSQPNNSG NFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 15 | 200 | 186 | 5.1E-82 | – | |
| PANTHER | 15 | 200 | 186 | 5.1E-82 | ||
| Pfam | 46 | 196 | 151 | 1.3E-33 | ||
| MobiDBLite | 68 | 88 | 21 | - | – | |
| Gene3D | 104 | 200 | 97 | 8.5E-35 | – | |
| SUPERFAMILY | 104 | 194 | 91 | 3.14E-17 | – | |
| ProSiteProfiles | 110 | 199 | 90 | 26.383 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0317400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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