Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0319100 |
| Transcript ID | LotjaGi4g1v0319100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G43270.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B; TrEMBL-Plants: tr|A0A151SSL2|A0A151SSL2_CAJCA Pectinesterase/pectinesterase inhibitor PPE8B; Found in the gene: LotjaGi4g1v0319100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69678139..69681629) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTTAGATCAAATTCTACCCATGAGAATTTATCACATCTCATGGTCAACTGTTTACTCTTAGTGCGAGCACACACTGT GAGAGGATTAATCACTATTAACAATGATGAAATTCTAGATACAAATGTGAATAAGAAATCTCACACTAGTGAAAAAATGT TAAGCAGTTTATAAGTAAGATGACTCATACACTCAATGTCTCAAGGTTTTGACTAAAAATGTGGTGTCTAATCCACTTAT TGTTTGCATTTTAGACCAGTGTAGAGAACCCTTTGTCCGTGCTTGCGTATCTCATAGCCCAGAGTATTATCAAAGCCGAT GATTGATGTGATTACGATGATAACTAGTTATATCGAAAGTCTTCCTTACAAGTGGTAGTAGCTCAAACTTGAGAGGTAGA AAATGTGGTGGTGATTCATAGAGTAAATATTGAGAATTAAGTGTGAGTTAAAGTTTCACATTTGTGTGTGATGAAGACAA AATAAGAAATATGACCTATAAAAACTTTTAATATATTGAGTTAAAAAATGATATTCAATCTGTTTGCACTATTAGCCCAA TATAGAGATATCCCAAAGTTCATGCATCTGGTGCCAACTAAGAGTGATTCAGTTTTATCTGAGATTGTTTGTTCTTTTTC ATATTCAGTCTATGTATTTTTTTCTCTAATTTCTTAATTATTTTATCAGCCTCACATTTATGGTATTGAAATGTAGTGTG AACTGTGAAGATCAAAGAATTTGACACATTCATTGTTCTTTACTTCGTTTCAATTTCAGAGCCCACGCTCTGAAATTTCC ACAGCTGCATTCCATCCAATCTCTCTCCCTTTATATACTCCTCACCATATCTCACTTCTCACTAGCCATTGCATCCTAAA ACTCAGTTTCTTCTTCTTCTTCTTCCTCCTTCCAAAATGGCTATCTCTTCAACACTCACTCCCACACTCATCCTCTTGCT GATAATGTCTCTTCAACCATGCACCACCCCATCTTCCGCTTCTACCATCACTGAATTCTCAGGATTATCATGTCTCAGAG TTTCTCCAAACAGATTCATTGACTCTGCAAACAAAGTCATTAATCTTCTTCAAAATGTCTCATACAATCTCTCACCCTTC ACCAAAGTTAATCAGGATAATGATAATCGTCTCTCAAATGCCATTTCTGACTGTCTAGAATTGTTTGACATGGCTTACGA AAATCTTAAATGGTCTATTTCCGCTACCCAGAACCACCAAGGTACCATTTCCACTACTAACACCATCATTTTCTAACATG CTCTGTTTCCCCTGTTCTTACATTTTCTAACATGCTCTGTTTTTTCCCCTGTTCTTACTATAGACATTCCAGGGAATAAG AACAATGGCACTGGAAACTTAAGCTCTGATTTGAGAACATGGATAAGTGCTGTACTTTCTTATCAAGAGACTTGCATTGA TGGATTCGAAGGTACAAACAGCAATGTGAAGGATCATGTATCAGGTGGACTTGACCAGGTGATATCATTGGTGAAGAATG AGCTACTTCTTCAAGTGGTCCCTGACTCTGATCCGTCAAACATTAGCAACAGTGGTGAATTTCCTTCTTGGGTCAAAGCA GAGGATGAGAAGCTTCTGCAACAGGATGCACCGCCGCCGCCAGCGGATGTGGTGGTGGCGGCGGATGGGAGCGGGAACTA CACGACGGTGATGGATGCGGTGAAGGATGCACCTGAGTACAACATGACGCGTTATGTGATACATGTGAAGAAGGGTATTT ATAAGGAGTATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATTGTTGGTGATGGCATGGATGTGACAACTATTTCT GGTAACCGGAGCTATGGTCACGACAATATAACCACCTTCAGAACAGCTACATTTGGTAAGGAGAAGACATCACTCACTCT CTATCATTATTCATTTCTCTTATCTTTCGTTAATCGTTAGTCTCGAATGACTCATTTTCTATTTCACCAATTAAATTGTG CCGCATCATTTAAAATTAAAAGTAAAACACACATGTTATAAAGGCTGAGGTGTACATTTTTTTTTATGGTAAAAGAGGTG AAATTCTATATTATTTCTACACACATTCTTCAAATTTAGTACAAATTTCAAGGCGAGAAAAACTTTGACCTATGGGAAAA ATAGTAACTGTGTGTGTAAACTTAGTGTGAAAACAGACCCTCACAAGAGTGTGATTATATGAAAAGTATAATTTAATTGT AAAAATTAGCATGATTATTTGGAGGGATGACTTAAAAGAGTAAAAATGCTAGGATGGGTGAAGTACTATTGAAACCATAA ATCATACTTGCACATCACTGTTCTAGTGGTTTATTATTAATGATAAAAAATGTAATTGCTATGGTATCAACAACTTTACT ATTATTAACATTAACCCATAGCAAAATCCACATCCTAACACAATTCCATTTCTTGTGCATGGGTAGCTGTAAGTGCTATA GGCTTCATAGCAAGAGACATCACCTTTGAGAACACAGCAGGGCCAGAGAATAAACAAGCAGTAGCACTAAGATCAGACTC CGACCTCTCTGTGTTCTACCGATGTGGGATCAAAGGCTACCAGGACAGCCTCTACGCTCACTCCCAAAGGCAATTCTACA AGGAATGCAGAATCAGGGGCACGGTTGATTTCATCTGCGGCAACGCGGCCGCGGTGTTCCAGAACTGCCTAATCCAACCC AAGAAGCCCTTGAAGGATCAGAAAAACACAATTGCTGCACAAAGTCGAACACATCCGAATCAAACCAGTGGCTTCTCCTT CCATAACTGCACCATTATTCCAGATCCTGATTTTCAACCTTCAAATGGTTCCATCCAAACATTCCTTGGAAGACCCTGGA AGAATTTTTCAAGAACAGTTTTCATGGAATCGTTCATGAGTGAGATGATACATCCAGAAGGGTGGTTAGAGTGGGAGACT AATACGACTTATGATGACACATTGTTCTTTGGCGAGTACCAGAATAAAGGACCAGGTAGTGGAGTTGCTAACAGGGTGAA ATGGAGAGGGTATCATGTGTTGAATAATTCACAAGCTATGGACTTCACTGTGAATCAATTTATTAAGGGGGATTTGTGGT TGCCTTCCACAGGTGTAAGTTACAATGCTGGATTGTTAGTTTGAAAGAAACTGAGTAATCTTGTTAGTGTGATTCAAATT GTATCAAATTAAGAACAAAGATTGAAAGAAAAGGGTGAAGGGTGAATGTTCACCCTTAGTAATTACTGATTGATTAATAA AGATTTTTGTTTCTTGGGACTTGAGAGTTTCTATATGGTTGAAAATTCAACAAATTTTCAAGTTAAGCTTATGAGGAAGA GAGTCCAGATAGATTTTAATGCATAAGATTTTAATGTGAAGTTAAATAAATTGTTTGCTCCTTTTATTTTTTTTGGGATG GATGAGGCAATGCATGGGCGGACCCATACTATGGCAGGGTGTGGCTTCCAG
CDS sequence (LotjaGi4g1v0319100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATCTCTTCAACACTCACTCCCACACTCATCCTCTTGCTGATAATGTCTCTTCAACCATGCACCACCCCATCTTC CGCTTCTACCATCACTGAATTCTCAGGATTATCATGTCTCAGAGTTTCTCCAAACAGATTCATTGACTCTGCAAACAAAG TCATTAATCTTCTTCAAAATGTCTCATACAATCTCTCACCCTTCACCAAAGTTAATCAGGATAATGATAATCGTCTCTCA AATGCCATTTCTGACTGTCTAGAATTGTTTGACATGGCTTACGAAAATCTTAAATGGTCTATTTCCGCTACCCAGAACCA CCAAGACATTCCAGGGAATAAGAACAATGGCACTGGAAACTTAAGCTCTGATTTGAGAACATGGATAAGTGCTGTACTTT CTTATCAAGAGACTTGCATTGATGGATTCGAAGGTACAAACAGCAATGTGAAGGATCATGTATCAGGTGGACTTGACCAG GTGATATCATTGGTGAAGAATGAGCTACTTCTTCAAGTGGTCCCTGACTCTGATCCGTCAAACATTAGCAACAGTGGTGA ATTTCCTTCTTGGGTCAAAGCAGAGGATGAGAAGCTTCTGCAACAGGATGCACCGCCGCCGCCAGCGGATGTGGTGGTGG CGGCGGATGGGAGCGGGAACTACACGACGGTGATGGATGCGGTGAAGGATGCACCTGAGTACAACATGACGCGTTATGTG ATACATGTGAAGAAGGGTATTTATAAGGAGTATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATTGTTGGTGATGG CATGGATGTGACAACTATTTCTGGTAACCGGAGCTATGGTCACGACAATATAACCACCTTCAGAACAGCTACATTTGCTG TAAGTGCTATAGGCTTCATAGCAAGAGACATCACCTTTGAGAACACAGCAGGGCCAGAGAATAAACAAGCAGTAGCACTA AGATCAGACTCCGACCTCTCTGTGTTCTACCGATGTGGGATCAAAGGCTACCAGGACAGCCTCTACGCTCACTCCCAAAG GCAATTCTACAAGGAATGCAGAATCAGGGGCACGGTTGATTTCATCTGCGGCAACGCGGCCGCGGTGTTCCAGAACTGCC TAATCCAACCCAAGAAGCCCTTGAAGGATCAGAAAAACACAATTGCTGCACAAAGTCGAACACATCCGAATCAAACCAGT GGCTTCTCCTTCCATAACTGCACCATTATTCCAGATCCTGATTTTCAACCTTCAAATGGTTCCATCCAAACATTCCTTGG AAGACCCTGGAAGAATTTTTCAAGAACAGTTTTCATGGAATCGTTCATGAGTGAGATGATACATCCAGAAGGGTGGTTAG AGTGGGAGACTAATACGACTTATGATGACACATTGTTCTTTGGCGAGTACCAGAATAAAGGACCAGGTAGTGGAGTTGCT AACAGGGTGAAATGGAGAGGGTATCATGTGTTGAATAATTCACAAGCTATGGACTTCACTGTGAATCAATTTATTAAGGG GGATTTGTGGTTGCCTTCCACAGGTGTAAGTTACAATGCTGGATTGTTAGTTTGA
Protein sequence (LotjaGi4g1v0319100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISSTLTPTLILLLIMSLQPCTTPSSASTITEFSGLSCLRVSPNRFIDSANKVINLLQNVSYNLSPFTKVNQDNDNRLS NAISDCLELFDMAYENLKWSISATQNHQDIPGNKNNGTGNLSSDLRTWISAVLSYQETCIDGFEGTNSNVKDHVSGGLDQ VISLVKNELLLQVVPDSDPSNISNSGEFPSWVKAEDEKLLQQDAPPPPADVVVAADGSGNYTTVMDAVKDAPEYNMTRYV IHVKKGIYKEYVEIKKKKWNIMIVGDGMDVTTISGNRSYGHDNITTFRTATFAVSAIGFIARDITFENTAGPENKQAVAL RSDSDLSVFYRCGIKGYQDSLYAHSQRQFYKECRIRGTVDFICGNAAAVFQNCLIQPKKPLKDQKNTIAAQSRTHPNQTS GFSFHNCTIIPDPDFQPSNGSIQTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETNTTYDDTLFFGEYQNKGPGSGVA NRVKWRGYHVLNNSQAMDFTVNQFIKGDLWLPSTGVSYNAGLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 11 | 522 | 512 | 1.8E-187 | – | |
| PANTHER | 11 | 522 | 512 | 1.8E-187 | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| SMART | 24 | 171 | 148 | 3.6E-14 | ||
| CDD | 25 | 169 | 145 | 1.26398E-31 | – | |
| Phobius | 29 | 524 | 496 | - | – | |
| Pfam | 39 | 156 | 118 | 4.7E-15 | ||
| Gene3D | 41 | 169 | 129 | 2.5E-9 | ||
| SUPERFAMILY | 58 | 171 | 114 | 1.2E-15 | ||
| SUPERFAMILY | 206 | 520 | 315 | 1.12E-106 | ||
| Gene3D | 208 | 524 | 317 | 6.8E-129 | ||
| Pfam | 210 | 508 | 299 | 5.7E-139 | ||
| ProSitePatterns | 235 | 254 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0319100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…