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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0321800 |
| Transcript ID | LotjaGi4g1v0321800.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G20730.2 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; Swiss-Prot: sp|P93022|ARFG_ARATH Auxin response factor 7; TrEMBL-Plants: tr|I1MS55|I1MS55_SOYBN Auxin response factor; Found in the gene: LotjaGi4g1v0321800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70016712..70022062) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTGCTCCATTGAGTAACTTATATTTGTTTTGACAACAGGGGAAAGGAAGACCATCAATTCAGAATTATGGCATGCT TGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCGCAAGGACACAGTGAGCAAGTATG TTTCTTCGCCTCCTGTATGAGCGTGATATTTACTGTATTTTGATTGTTGATGGAAGTTACTTTTGATTACTAAAACTTTC AGGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTT CACAATGTTGCGCTGCATGTACGTGCACTCCCCACTTGTTACATGGCTATTATGCAATATTGAAAACTTGTGATGTTTTT TTTTACTATTTTATGTATTATGCAGTTCTCTTATGTGGAAATGTGTACATGTATATTGATTTACTTGTGTGCTTTCTACC AGGCTGATCCTGAAACTGACGAAGTCTATGCACAAATGACCCTTCAGCCTGTAAACAAAGTAGGTTAGCTTGTTACTCTG AGACTTCGCATATTGTATTCAGAATTTACTTCCCGCCTCTTTACGAAGATCCTCTCAAGCTAATGGTGTGTAACTATATC AAAGATTGTTCCATTTGCCTTTTCTGCAGTATGATAAGGATGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGA CAACCTACAGAGTTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGC AGCTGAGAAAATATTCCCCCCCTTGGTGAGTATACAACATTCTCATTGCCTTCTCTGTTGCAAGAATTGGAAGATGTTTT CGTGATGCATCCGGGTTTTCCCTATATATTCTGACCATTAGTGTGTTTGATAGGATTATTCTATGCAACCTCCCGCTCAG GAGCTTGTTGCCAAAGATTTGCACGACACTACATGGTCATTTAGACATATTTATCGGGGTATTGACACTTCTTTGTATTC TTGATTAATTGCCATCTTTTTTTATCATATAGTAAAATCATAGATTCATAGTCTAGTGTTTTCTAAACCTCCCAGACTTG TATTATCTTGTTAGTTAGCTACCTCATTTTGCTTGGACTAAAGCATGTGCCTAAAGTTCCCCTAAAGAAAAAAAAATGAT ATTAGAATAATCTTATTAGTGGTTTTAACCAAATTATGAATATAGAAGCTGTTTAATTGATGTTTGGAAAAATTTGAATG CTAAAATTGCTAGCACATTGGCTACAGGACAACCAAAGAGGCATCTGTTGACTACTGGTTGGAGTGTATTTGTCAGCACA AAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGGTAAAATATATATCTTTTTATGTGGGAATTTCAGGAATATTT TGAAACCTTGTTGCTGAATAATTTATTTAAATTCTTTTTGGGGTTATTTTTAGAGATGAAAAACAGCAACTTCTTTTAGG CATAAGGCGTGCTAATAGACAGCAACCAGCACTTTCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTG CTGCAGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGTACTATTTGGCATGTAAGAAT GGCATCCATTGAATATTTGTAACAGTCTCTTACAAAAATCTGCCAATTTAACAGGGCCAGCCCCTCAGAATTCGTTATTC CATTGGCCAAGTTTAACAAAGCCATGTACACTCAAGTTTCTCTAGGGATGAGATTTAGGATGATGTTCGAAACAGAGGAG TCTGGAGTACGCAGACATATGGGTACAATCACTGGGATTAGTGACTTGGATTCTGCCCGATGGAAAAGTTCACAGTGGCG CAATCTTCAGGTATTATTAAACCGCTCTTATTTTTACTTTGTAGCTTTGTGTTTTTATACTTCACCAAAAAGAAAGAGAT GTATTGTTTGGATAACTGTTTGAGTATTTTCGTGGTGCTCGTAATTTCTCGAGTCACTAGTTCATTATTTAACAAAATGT TTTATGTTTCCTTAGATTTGAGTATCTTATAACATTCATTATGGACCTACGGTCTATGCCCTTCCATGAGCATGTGTCCC CCATGGTCATAGTGTGTACCTTACAGTAGTAACACCAATCTCTTTTTTGGTTTATTGAGATTTGAGGCAGTCATCTTTTG AACTATTGATAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGAGTTTCAATTTGGGAAATTGAACCAGT AGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCTAAGTTTCCCAGACAACCAGGAATGCCAGGTAGCACGA GTCACACCTTGACTAGTTCAGTTTTCATTGAAGATTTCTTGCTTGGATATATTTTGTTTTTATGAACAATTCATTTATAT CTGTTGTCAATTCTTTATATAAGTCGTCTTTTGATAAGATGCTCAGTTGTCAAGTCTTTCAATAATTCTACTTCTTAGAA TCAACCTCACATGATGAGTAGAATGAAATCAAGCAGCTTTTGTGTTCCAACATTTTATTCTCATCTCCCAACCCTTGCAG GTTGTGCATGACAAGTGTGACTGATGATCCTTGTGATTGATTTTTCAGATGACGAGTCTGATATAGAAAATGCTTTTAAG AGAGCTATGCCATGGCTTGGGGATGACTTTGGCATGAAGGATGCCTCAGGTTCAATCTTCCCTGGTTTGAGTTTAGTGCA GTGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCAGGATGTTTCCCACCCATGCTTTCTCCTAATACTC TGCATAGTAACCTTGGCACGGATGACCCATCCAAGCTACTCAGCTTTCAAGCTCCTGCCCTCTCTGCACCAAGTCTTCAA TTTAATAAACCTAATTTACCAAACCAAATCAACCAGCTGCACCAGTCCCCAGTATCATGGCCTCAGCAGCAGCAGCAGCA GCAACAACAACAGCAGCAGCAGCAGCAGCAGCTACAGCTGCAACATCAACAGCAGCAGCAGCAGCTACAACAACAGCAAC AACAACAACAGCAGCAGCAGTTACAGCAACAGCAACAACAGCAGTTACAGCAACAGCAATCACAACAGCAACAGCTACAG TCATTGTTGCAAATACCAATGAACCAGCTCCAGCAACCAAGGCAACAACAGCTGCCTGAACCCAAGAACTTGCCATTGCC GCAGCAACAATTGCCTCAGCAGCTAGGACAGCAGTCACAAAAAGCTATTATGAGTAATGGTGTAGTTGCTTCTAACCAGA TTACAAATCAGCTTGTACTTCAGCAACAGCAATTGCTCTCGGGAGGTATCTCACCACAACAAAGTATTCACTCAGCTAGT AAGACTACATTCCCACTCACATCCCTACCACAAGAATCGCAATTTCTGCAACAAATCGACCAGCAAGCTAGCCTCTTACA GAGGCAGCAGCTTCCCCAACAGACACAGTTGCAACAATCTTCACTGCATTTGTTGCAACAAAACCAGCCACAGAGGGCAC CACAACAGCCACCAGTGGCTACAATGTCGCAGCAAACTCCCTCAGAGCAACAGCTACACCTACAGTTACTACAGAAATTG CAGCAGCATCAGCAGCACCAACAACTTCTTTCCACATCTAGCCCGCTTTTGCAGCCTCAGCTTCTGCAACAACAAAGTAC TCCCCAACAAAACCAGCAATTAACACAGCTGCCTGCATCTCAGCATCAGACTCAACAGCTTGGGAATAATGCATTTTCAA CAGAGAAGGTACTCAATAGCAACAGCTTCTCTTCTTCTCTTATGCAACCACACCAGCTTCCTGTGAACCACCCCCAGAAT ACACAGAAATCGCTTGCAATCACTAGAGCCCCCTCTACACTTACAGATGGAGATGCCCCATCATGCTCAACCTCTCCATC TACTAATAACTGCCAGATATCTCCATCAAATCTCCTGAAAAGAAATCAACAAGTACCTGCTACATTAGGGGGTAGTTTGG TAGTGGAGTCCACTAGTAATCTGATACAGGAGCTTCAGAGTAAGTCTGACATGCAGATAAAAAATGAGTTCTCAAATGTG AAAGGGTTTGACCAGCTTAAGTATAAAGGGACAATCACTGATCAGATGGAAGCTTCTTCTTCTGGAACATCTTACTGTCT TGATCCTGGTAATGTCCAGCAGAGCTTACCACTTTCCAACTTTTGTATGGAAGGGGATGTCCAATCACACTCTAGAAGCA ATCTACCATTTGACTCTAATCTTGATGGTCTAACGCCTGATCCTGTGCTTATGAGGGGGTATGATTCTCAGAAAGATCTT CAAAACATGTTGTCTAATTATGGTGGTGCCCCGAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTC GTTTGGAGTGCCAAACATGCCTTTTAATCCTGGTTGCTCAGGTGATGTTGGCATTAATGATACTGGGGTTTTAAATAATG GCTTGCGGGCTAACCAAACTCAACGAATGCGAACATATACTAAGGTTTGTCGTTCTCTGACGATTACTGATCTATTTAGA ATTTTTATATTAAATGGCATGCTTTGTGTCTCAATGTTTAATGAATTGTAGGCATGTTGTGCAACTTTTAAATGAGAGTC TTTTTTCTCTTGTTTAGTCTCTAATGTTATTGTATCTTCGTAAATCAATTAGAGGTACACCATTAATGTCATTCCTGAAG CAGTGTCATCTGAGTACCTTCCTCTAATGCGTTGTGTTCTGATGTATTCTTTAGATGCTGCATTCAAATTCTATACAAAT TTTGTAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTACAAGGGCTACGACGAACTCCGGAATG ATTTGGCTCGAATGTTTGGCATTGAAGGGCAGCTTGAAGATCCTCAAAGGACTGACTGGAAATTGGTATATGTAGATCAT GAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAGTAAGTGTAGTTGATTCCTTAATAGTTTCTAGGCCTGCTATT TCCGTGGTTATGGTTCCTTTTCTTGACCTTCAACTTGTTATTCCCTGCAGAGAATTTGTAAGCTGTGTCCAGAGCATAAA GATACTGTCATATACTGAGGTGCAGCAAATGAGCTTGGATGGAGATTTAGGTAACGTTCCAATCCCCAATCAAGCTTGCA GTGGCACAGACAGTGGCAATGCATGGAGGGGACCGTATGATGATAACTCTGCAGCCTCGTTTAATAGATAA
CDS sequence (LotjaGi4g1v0321800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAAGGAGACTGACTTCATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGCT GCATGCTGATCCTGAAACTGACGAAGTCTATGCACAAATGACCCTTCAGCCTGTAAACAAATATGATAAGGATGCAATAC TGGCATCAGACATGGGTCTCAAACAAAACCGACAACCTACAGAGTTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGC ACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCCCCCTTGGATTATTCTATGCAACCTCCCGC TCAGGAGCTTGTTGCCAAAGATTTGCACGACACTACATGGTCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATC TGTTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAA AAACAGCAACTTCTTTTAGGCATAAGGCGTGCTAATAGACAGCAACCAGCACTTTCTTCATCAGTAATATCCAGTGACAG CATGCACATTGGCATTCTTGCTGCAGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGG CCAGCCCCTCAGAATTCGTTATTCCATTGGCCAAGTTTAACAAAGCCATGTACACTCAAGTTTCTCTAGGGATGAGATTT AGGATGATGTTCGAAACAGAGGAGTCTGGAGTACGCAGACATATGGGTACAATCACTGGGATTAGTGACTTGGATTCTGC CCGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGAGTTT CAATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCTAAGTTTCCCAGACAA CCAGGAATGCCAGATGACGAGTCTGATATAGAAAATGCTTTTAAGAGAGCTATGCCATGGCTTGGGGATGACTTTGGCAT GAAGGATGCCTCAGGTTCAATCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTCTCTG CTGCTCAATCAGGATGTTTCCCACCCATGCTTTCTCCTAATACTCTGCATAGTAACCTTGGCACGGATGACCCATCCAAG CTACTCAGCTTTCAAGCTCCTGCCCTCTCTGCACCAAGTCTTCAATTTAATAAACCTAATTTACCAAACCAAATCAACCA GCTGCACCAGTCCCCAGTATCATGGCCTCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAAC AGCAACAACAGCAGTTACAGCAACAGCAATCACAACAGCAACAGCTACAGTCATTGTTGCAAATACCAATGAACCAGCTC CAGCAACCAAGGCAACAACAGCTGCCTGAACCCAAGAACTTGCCATTGCCGCAGCAACAATTGCCTCAGCAGCTAGGACA GCAGTCACAAAAAGCTATTATGAGTAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGCTTGTACTTCAGCAACAGC AATTGCTCTCGGGAGGTATCTCACCACAACAAAGTATTCACTCAGCTAGTAAGACTACATTCCCACTCACATCCCTACCA CAAGAATCGCAATTTCTGCAACAAATCGACCAGCAAGCTAGCCTCTTACAGAGGCAGCAGCTTCCCCAACAGACACAGTT GCAACAATCTTCACTGCATTTGTTGCAACAAAACCAGCCACAGAGGGCACCACAACAGCCACCAGTGGCTACAATGTCGC AGCAAACTCCCTCAGAGCAACAGCTACACCTACAGTTACTACAGAAATTGCAGCAGCATCAGCAGCACCAACAACTTCTT TCCACATCTAGCCCGCTTTTGCAGCCTCAGCTTCTGCAACAACAAAGTACTCCCCAACAAAACCAGCAATTAACACAGCT GCCTGCATCTCAGCATCAGACTCAACAGCTTGGGAATAATGCATTTTCAACAGAGAAGGTACTCAATAGCAACAGCTTCT CTTCTTCTCTTATGCAACCACACCAGCTTCCTGTGAACCACCCCCAGAATACACAGAAATCGCTTGCAATCACTAGAGCC CCCTCTACACTTACAGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGATATCTCCATCAAA TCTCCTGAAAAGAAATCAACAAGTACCTGCTACATTAGGGGGTAGTTTGGTAGTGGAGTCCACTAGTAATCTGATACAGG AGCTTCAGAGTAAGTCTGACATGCAGATAAAAAATGAGTTCTCAAATGTGAAAGGGTTTGACCAGCTTAAGTATAAAGGG ACAATCACTGATCAGATGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAGCTTACC ACTTTCCAACTTTTGTATGGAAGGGGATGTCCAATCACACTCTAGAAGCAATCTACCATTTGACTCTAATCTTGATGGTC TAACGCCTGATCCTGTGCTTATGAGGGGGTATGATTCTCAGAAAGATCTTCAAAACATGTTGTCTAATTATGGTGGTGCC CCGAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTTAATCC TGGTTGCTCAGGTGATGTTGGCATTAATGATACTGGGGTTTTAAATAATGGCTTGCGGGCTAACCAAACTCAACGAATGC GAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTACAAGGGCTACGACGAACTC CGGAATGATTTGGCTCGAATGTTTGGCATTGAAGGGCAGCTTGAAGATCCTCAAAGGACTGACTGGAAATTGGTATATGT AGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATAC TGTCATATACTGAGGTGCAGCAAATGAGCTTGGATGGAGATTTAGGTAACGTTCCAATCCCCAATCAAGCTTGCAGTGGC ACAGACAGTGGCAATGCATGGAGGGGACCGTATGATGATAACTCTGCAGCCTCGTTTAATAGATAA
Protein sequence (LotjaGi4g1v0321800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFCKTLTASDTS THGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDE KQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRF RMMFETEESGVRRHMGTITGISDLDSARWKSSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQ PGMPDDESDIENAFKRAMPWLGDDFGMKDASGSIFPGLSLVQWMSMQQNNQFSAAQSGCFPPMLSPNTLHSNLGTDDPSK LLSFQAPALSAPSLQFNKPNLPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQQQQQQQLQQQQSQQQQLQSLLQIPMNQL QQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAIMSNGVVASNQITNQLVLQQQQLLSGGISPQQSIHSASKTTFPLTSLP QESQFLQQIDQQASLLQRQQLPQQTQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSEQQLHLQLLQKLQQHQQHQQLL STSSPLLQPQLLQQQSTPQQNQQLTQLPASQHQTQQLGNNAFSTEKVLNSNSFSSSLMQPHQLPVNHPQNTQKSLAITRA PSTLTDGDAPSCSTSPSTNNCQISPSNLLKRNQQVPATLGGSLVVESTSNLIQELQSKSDMQIKNEFSNVKGFDQLKYKG TITDQMEASSSGTSYCLDPGNVQQSLPLSNFCMEGDVQSHSRSNLPFDSNLDGLTPDPVLMRGYDSQKDLQNMLSNYGGA PRDIETELSTADISSQSFGVPNMPFNPGCSGDVGINDTGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDEL RNDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSYTEVQQMSLDGDLGNVPIPNQACSG TDSGNAWRGPYDDNSAASFNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 0.0 | – | |
| PANTHER | 1 | 434 | 434 | 0.0 | – | |
| SUPERFAMILY | 60 | 199 | 140 | 1.7E-44 | ||
| Gene3D | 67 | 172 | 106 | 2.5E-41 | ||
| CDD | 69 | 161 | 93 | 1.37269E-19 | ||
| Pfam | 70 | 171 | 102 | 1.0E-20 | ||
| ProSiteProfiles | 70 | 172 | 103 | 12.167 | ||
| SMART | 70 | 172 | 103 | 7.9E-23 | ||
| Pfam | 196 | 278 | 83 | 4.0E-34 | ||
| Gene3D | 233 | 304 | 72 | 1.9E-31 | – | |
| MobiDBLite | 413 | 440 | 28 | - | – | |
| Coils | 437 | 472 | 36 | - | – | |
| MobiDBLite | 480 | 509 | 30 | - | – | |
| PANTHER | 510 | 1048 | 539 | 0.0 | – | |
| PANTHER | 510 | 1048 | 539 | 0.0 | – | |
| MobiDBLite | 596 | 621 | 26 | - | – | |
| MobiDBLite | 652 | 675 | 24 | - | – | |
| MobiDBLite | 722 | 746 | 25 | - | – | |
| Gene3D | 929 | 1023 | 95 | 1.4E-40 | – | |
| Pfam | 929 | 1019 | 91 | 8.7E-9 | ||
| ProSiteProfiles | 934 | 1027 | 94 | 25.31 | ||
| SUPERFAMILY | 947 | 1013 | 67 | 1.23E-8 | – | |
| MobiDBLite | 1041 | 1061 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi4g1v0321800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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