Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0324200 |
| Transcript ID | LotjaGi4g1v0324200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RNK2|A0A151RNK2_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi4g1v0324200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70264517..70267070) extracted from Lotus japonicus Gifu genome v1.2.
AATTTTCCTTAGTTAAATATGTTATGACCACATAAATAAGTTTTATACAACTATTTCACCATATTACAAATAAATTAAAA TAAAAAAACGAAGGTGAGGAAGCTGCCTACTTTTGTAATGAAGGTCGATTTTGAAAAGGCATACGATTCCGTAAAATGGT CCTTCTTGTTCTATACATTAAGGAGGCTGAATTTTGGTGATCAGTGGATTGGGTGGGTGAAGAGTTGTCTAGAATCTTCT TCCATCTCGGTTTTGGTTAGTGGAAGCCACACATATGAATTTATGATGGAGAAAGGAATTAGGCAAAGGGATCCCCTTGC CCCCTTCCATTTCCTTGTTGTGGCGGAGGGATTGAGCGGTTTGGTAAACCAAGCGGTAGTGCATAATAAGTTTATTCCTT ACAAACAGGTACAAGTGGGGCTGCTACAGTTCGTCGATGATACAATTCTCACGGGTGAAGCTTCTCTCTCTAATGCCTTC TTGGTTAAAAGTATCCTCAGAAGTTTCGAGTTGGCGTCGGGATTGAAGATCAATTTTGCTAAAAGAAAAGTTGCTGGCAT CTGTGTTGATGATAGATTAATCAGATGTATGGCGGCTATCCTGAATTGCAACGTTATGAGGATCCCATTCGTATATTTGG GTCTCCCAATTGGTGGCAATCCTCGTCGACTTTCTTTTTGGACCCCGATTATCAACAAACTGTATGGGAGATAGTTGAGG TGGAAACATAAATTACTTACTTTTGGTGGAAGAATCTGCCTTATCAAGTCAGTTATGTCATCCTTACCACTACATTTCTT GTCATTCTTAAGATGCCCCCCCTGGGATAATCAAAAGATGCAATAGTATTATACTGAGTTTTCTTTGGGGGGGGGGGGGG TTGATGGTGTTCGAAAGACAGGTTGGGTAAGCTGGGATAATATTTGTAGGCTAAAGTCGGAAGGTGGACTAGGTGTGAAA AATTGGAGGCTTTTTTATGTGGCTTTACTGGCGAAATGTAGATGGAGGTTGATGGTAGGTGATTCAGGTTTATGGAGCTA TATTTTGAACAATAAATATAAAGGAAGATATCACGAGAAGGCCTCAATTTGGTGGAAGGACCTCTTCTCAATTTGCTTTG AGAGCGAAAGTAGCAATTGGTTTGATGAATCAATATGTCGAAGGATGGGAGATGGTAGTAGTATATTGTTCTGGTACATG GACTAGTGCGATCATAGGGTTCTAAAAGATAAATTTCTAAGGTTGTTTAGTCTTTCAAAACAGCAGCATGCTTGCGTGAG TGAGGTTGGCGTTTGGTTGGCAGGAAGGTGGCAGTGGAATCTGGAATGGCGAAGAGAGTTGTTTGGCAGAGAATTGGGTA TGATAAATTGTATGTCTACTTGGTTGACAGGTTTCTCACCTACATTAGGCCAAACAGATCGGTGGACATGGGTGAAGGAA GGATCTAGTGTATTTTCTGTTAGTTCAGCGTATGACTCTCTTCGTGGTGAAGGGGATGTTTCTGAATCGAAGATATTTAG CAAATTATGGGCTATCCAAGCTCCTTCCAATCATATGGCGTTGGCCTGGAAAATTCTTACTAATCGTATTCAAACAAAGG TTAATTTACAAAGAAGGTATGCTCTACCTCCCTCTGTTTCTAACCACTGTGTTTTGTGTGCCCAACATGAGGAAACCTCA TCACATTTATTCTTCTCATGTCCGGTGGTTTGGAGGATATGGATGCAGGTGTATTCGTGGTTGAAATTCTATACCGTTTT GCCAGAGGAAGGAGTATCTCATTTCTCTCAGCATGTGGTGGGTTGTGGCAGAATGGATAAAATTCTCATAATGATTTGGG TGGCTACAGTGGTTTTGGTTTGGTCATTTAGAAACAAGGTTATATTTAAGAATGGGACAAGTGACAGTTCTGGAATTCTT AAATCAATACAATATCAATGCTGGTTGTGGTACAAAGTGAAGGTGAGTGGTTTCCACTATTCTGTGTTTGAATGGACAAT GAACCCATTAATGTGCATTAAATCTGTTATTCACTAATTGGAAGGCTGCATACTGTTTGTTGAGGGTGCCAACGTGTGGC AGACTAGTATTTTTGGATGGGATTATTTTGTTATCTTGCCAAAGGACCAAAAGATTATCATTGCATTATGTACGTTGGAG TAGTACATCTGTTAGTGCTTGCAGGAATTGGTTATTTCTCAACTGTTTGTTATTGGAATGCTCGCCATTTCTAGGAGCAA AATAGCTATATTCGGCACTTTTTGGAGCATACCTTGAAGGCAATTATTGGGTGGTGTTTTCTTTCTAGTAGAAGTGTAGT GGTGTTACCTTATTTTGTTCTAGTTTTTAAGTCCTCCTTGGAAGTTTCACTTTGATCTTAGCTAGCTAGTGGTACTCTTT TTCTTTACTAGGTTTTACCAAGGGGTTTTTCCTAGTAAGGTTTTAATGAGGCCTCTTTCTATGATCATTCTTCGAAGGTG GGGGTGGGGGTGGGTTACCATTTTTAATATTCGGTTCTTATGCTATTGTAACTATTATTTCTTCTTTTTGCTTG
CDS sequence (LotjaGi4g1v0324200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAATTGTATGTCTACTTGGTTGACAGGTTTCTCACCTACATTAGGCCAAACAGATCGGTGGACATGGGTGAAGGA AGGATCTAGTGTATTTTCTGTTAGTTCAGCGTATGACTCTCTTCGTGGTGAAGGGGATGTTTCTGAATCGAAGATATTTA GCAAATTATGGGCTATCCAAGCTCCTTCCAATCATATGGCGTTGGCCTGGAAAATTCTTACTAATCGTATTCAAACAAAG GTTAATTTACAAAGAAGGTATGCTCTACCTCCCTCTGTTTCTAACCACTGTGTTTTGTGTGCCCAACATGAGGAAACCTC ATCACATTTATTCTTCTCATGTCCGGTGGTTTGGAGGATATGGATGCAGGTGTATTCGTGGTTGAAATTCTATACCGTTT TGCCAGAGGAAGGAGTATCTCATTTCTCTCAGCATGTGGTGGGTTGTGGCAGAATGGATAAAATTCTCATAATGATTTGG GTGGCTACAGTGGTTTTGGTTTGGTCATTTAGAAACAAGGTTATATTTAAGAATGGGACAAGTGACAGTTCTGGAATTCT TAAATCAATACAATATCAATGCTGGTTGTGGTACAAAGTGAAGGTGAGTGGTTTCCACTATTCTGTGTTTGAATGGACAA TGAACCCATTAATGTGCATTAAATCTGTTATTCACTAA
Protein sequence (LotjaGi4g1v0324200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINCMSTWLTGFSPTLGQTDRWTWVKEGSSVFSVSSAYDSLRGEGDVSESKIFSKLWAIQAPSNHMALAWKILTNRIQTK VNLQRRYALPPSVSNHCVLCAQHEETSSHLFFSCPVVWRIWMQVYSWLKFYTVLPEEGVSHFSQHVVGCGRMDKILIMIW VATVVLVWSFRNKVIFKNGTSDSSGILKSIQYQCWLWYKVKVSGFHYSVFEWTMNPLMCIKSVIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 154 | 154 | - | – | |
| PANTHER | 15 | 222 | 208 | 3.4E-28 | – | |
| PANTHER | 15 | 222 | 208 | 3.4E-28 | – | |
| Pfam | 32 | 121 | 90 | 1.2E-19 | ||
| Phobius | 155 | 171 | 17 | - | – | |
| Phobius | 172 | 225 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0324200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…