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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0325100 |
| Transcript ID | LotjaGi4g1v0325100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT5G42700.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100; TrEMBL-Plants: tr|A0A151RRB3|A0A151RRB3_CAJCA B3 domain-containing protein family; Found in the gene: LotjaGi4g1v0325100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70342700..70346662) extracted from Lotus japonicus Gifu genome v1.2.
TACTTACGAAGCAAATTTTAGACATAATGAACACTACTCATGCTCAATTGTGAAGAGCTGAAGAAAGAGTGAGCCTTGCC TTCTTCTTGGGGTCGGAGGACACAAGACAAGATTGATGTCGGTATAGACTTGTTATTCTACTATTATTAAGAAACATAGT TTGTTCATTTTACATTTAACATATAAATTTCTTGTACCATCATCATATGTCTCATTTGTTTGATGAATGTTGAACAGGCT ATCAATCGTAATCCACCAAAAAAGTAAGTTAATTTTCTTCGCTTCTTATTTGGTCTCATAATGAATAGTAGAATACAATG ACTCACTCAACATTTTACTTATCTGTGTTGTGCATGCATATATAGACGAAAGAGTAGTACTTTTAACTATGAAGCTCAAT CTGCTGCTCTGCAACGTGCTAAAGAGATACAAGCTAAATTATCTCCTGAATTCCCAAGCCTTCTTAAGTGCATGCATCCA TCTCATGTATCTGGAGCATTTTGGCTTGTAAGATCTCACCCTCTCGATCTTAGGGTTTTAAATTGCGGTTGCAGTTACCG TTGTATTGCGAAAGATCAAACACTGTTTGATTGATGTGGTTGGAATTGATGCTGTCATGCTAATCGGGGGAATTCCAAAG CCCATTATTTTGCGGCTGCAATTGTAGTTGTGAACCGCAATTTTAATACCCTAATTCTCCATGCTTTTGCCTTTTCAAGT TAATAGTGAGAAGAGAAGCACTGACTACACACTTTTCTTGAACACATTTTACTCACTTTTTACAAAAATGAATTTACTTC TTTTAGAGTGTGTTCAAAAGAGTGTAGTATTTCTATGATTTGTATTATTAATATTCACCATGTTATTTATTGCCACAGAG TCTTTCAACCAAGTTCTGTCAGATGCATTTGCCAAAGGCTGATACCATTATTACTCTGGAAGATGAAAGTGGGGAACTAT ATGAAACCAAATATATTGCTGATAAGGTGGCCTTGAGTGGTGGATGGATGAGGTTTTCCATAGCTCATAACTTACATGAG ATGGATGTTCTCATATTTCACTTGGTCAAACCTTCCAAGTTTAAGGTAATTGTTTGATCTTTCACATTAAACATATATGT GTGTGTGTGTTTTGTCTCAACTCTCAATTCATTATATTATGATCTTCTTGCTAGTTTAAATACTTGTACTAGTTTTGGAA GTTGCAATCTTCAATATCTTAGATGTCCCTAGGTGTACATTGTAAGATCTCAGGGGTCAGATGAAGTGGATGGTGCTCTT GGCATGCTCAAGTTAGATAAGTGCAGAAAAACAAATGATGAAGTTAGTAGTGTTCTTGGTAAGTTTGTCATAGTTTTCCT TGCTTTTTGAAACTTGTATGCATCATGTTAATGTTAGATTTGAGATTTTTCACGTTTTAGCTATAATTACCTAGTTAGTC ATGATAACCTAGCAGTAATAATGACTAAGTTGTTTTATGCATGTAAGTGTTAGCCTTTAGTCTTTAGTCTTTCAGTTAGT ATACAAGTTAAATATCAATGAAATACTAGTAATTGTAAGAGTTCATACCATAGCTTGTAATTTTCCTCTTCATTTATAAG TTTGTTGTCTGCGTTTCATCTATATCCCTATCAGATGCAAAACAAGTAGAGAGCATAAAATTATATTTGCTGTCTCACTT CAGACACTACTCGAGGAAATGATCCAAGGATGATTTTTGGGGATAACTTATCTCAATCAGATCAGCTTGAAAATGAAAGT AAAGATTTATTCTCAGAAACTTCAGAATCTGTTATCAATAGTTTCGAACAAGTGACTGGTATTGAAAATTTCATCATCAT GGTGAATGGTTTGGTTATCTATTCGGAGCTCTCTGAACGCCTTTGGGTGAAGTATTACGAGCTATGCCGCAGCCAAAGAT GTTTTCTTCATGATAATCTTGTTAGCGGTCTTAACAGCAAACTGGTGGTTGGAATGATTACTGAGACCATTAACATTGCT GATGCCATTAAAGCCAGCAAGGTTACAACCTCTATGGATAATTTTGTTACATGGGACAAAACATTGAAAGCCTTTGAGGG CATGGGCATGAATGTGAGCTTTTTAATTACTCAGCTAGACCACCTCATGAAACTAGCCCTGAAACTAAAAAGGCACAAAG AGGCAAGACTTGAACGTCTCCATGCTAATGAGAAGTTGAAAGCTCTAGAAGCAAGAGTTTTGGAAGTGAAAAAGACCATA AGGGGACTTGATGAAGAGATTGCCATGGAGGACATGAACCCTGAGAGGGTGGAGACTATGTTTCAAGAACTGGTTAATGC TCCTTGGTGATGTAGCTGCTTCTTAGCTTTGACATAAGTTCTAGTATATAATATGATATAATAGACTTAGCAAAAGAAAT AGTTTGAGCATTAGGAGGAACATGAAAGAGCCAAATAGTCTGAGAATTAGGAACATGAAAGAGCCTTGCTTGCTCTTGCT ATTAGAACTTCACAGTTGTTCTGTTTCTTTTGTAGGACCTTAAGCATCTTGTTGTTGGATTCTGGATGTGACTCTTAATT ACAAGTAGGAAAAGTTTTCCGTGTAACTTTATTATGAACTAAGCCCCAAAAAAGTAACTTATTGTACCACAAAGCACGAA GTTCAAACTAGCGTAATGTTATTTTAGCTTAAGTAGAGGTTTCGAGTTCGGGTATCTCCAACAGGATTGATTGCCTCAGC ATGATTATAAACCCACATTGAGTCAAAACCATGGTGGATATAAGCAACTTTCTTTAGTTTTTCTGGATGTTCCTCGTGAT TTAGGCGGCTTCACTGTATGCATACAAAGATGCTAAGTAACCTATTTTGAACTAAGTAAATTACTTTGGTTGGACTTGGC AGTCAAGTTTAATAGTGCTAGTGCTATCAGCATTAGGTAAAAAATTTAATGAAGAGAAATGACTGATGTTGAAACCATTA TTCATTAACAAGATGAATTGAATTGGATGCTGCAAATCAATAGAAATTCAGGTTACTTCTATCTTGAATGCTAATTCAAA TTTAATGGGCACAGTGACTGGAACAAACGACAACACCATTACCAACAAGTAACTAAAGAAAACACTGAAAGTCAAACATG CAAAAATCTGCACTGAGCAAGTACAAGGTAGAATGAAGACAGAACAAGATTGCCATGGTGCCTCATGGTTCAAAATCAGT CTTCACCCACTTCCCATATTTGCTATTCATCTTCTCATCAAACTCCTTATCCTTAACCTCAGCAATTTTGCTCGCATTAG CCATGGATTCCTCTTGCACTCTGGCAACCCTTCTACTCCTCTTCTTCGCTGAAGCCTCTTTCTCTGCTTCCAATCCTTCA TAGTCTTTCACCAAACAGCTATGCACTGCACAGCTCAACACCAACACCACCATTTGCAACATGCACATGGCCATCAAAGC CCCACACTCAACCCTCACCAAGAGCTTCGCTTCCTTTGGATCCCGCGGTGACTTCAAAAGGGTCAGGCTCGCTTTCTCTT TGGTGAACAAGGCTAACATGGCAAGAACCTGTCCTGTCAAAGAGGCAAGTGTGAGGGAAATGTGGGTGAGGAAACAGAAG TGTGTAAGGTGGGAGTAGAAGCCTATGAAGGATGAGAGAAGTGAGATGCTAGAAACCATGAGGAATGCCATGCCAAGGGA AGTTGGGGGCATTTTGAGGAGAATGGTGGGTGCGAATGAGGCGGCGGAAAGGATGAAAAGAGTGAAATTTAGACAGCAGA GGAGGAGGGTGGTGAAGGAGCATGCCTTTCTGAGCTTGGAAGAAGCCATTTTTGGTGTTGGTTTCTTGAGAATATTGTCA AAATTTGATGGTTTGAAGAGGGTGAAGAATTTCAAATTTATAGGAATGTGAATTGGTGCCGTTATGTACTGGCTAACAAC GGCTAGCATAGAGCAGGCCCCACTTTATTCATTCGAGAAAGTG
CDS sequence (LotjaGi4g1v0325100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGCTATCAATCGTAATCCACCAAAAAAACGAAAGAGTAGTACTTTTAACTATGAAGCTCAATCTGCTGCTCTGCA ACGTGCTAAAGAGATACAAGCTAAATTATCTCCTGAATTCCCAAGCCTTCTTAAGTGCATGCATCCATCTCATGTATCTG GAGCATTTTGGCTTAGTCTTTCAACCAAGTTCTGTCAGATGCATTTGCCAAAGGCTGATACCATTATTACTCTGGAAGAT GAAAGTGGGGAACTATATGAAACCAAATATATTGCTGATAAGGTGGCCTTGAGTGGTGGATGGATGAGGTTTTCCATAGC TCATAACTTACATGAGATGGATGTTCTCATATTTCACTTGGTCAAACCTTCCAAGTTTAAGGTGTACATTGTAAGATCTC AGGGGTCAGATGAAGTGGATGGTGCTCTTGGCATGCTCAAGTTAGATAAGTGCAGAAAAACAAATGATGAAGTTAGTAGT GTTCTTGACACTACTCGAGGAAATGATCCAAGGATGATTTTTGGGGATAACTTATCTCAATCAGATCAGCTTGAAAATGA AAGTAAAGATTTATTCTCAGAAACTTCAGAATCTGTTATCAATAGTTTCGAACAAGTGACTGGTATTGAAAATTTCATCA TCATGGTGAATGGTTTGGTTATCTATTCGGAGCTCTCTGAACGCCTTTGGGTGAAGTATTACGAGCTATGCCGCAGCCAA AGATGTTTTCTTCATGATAATCTTGTTAGCGGTCTTAACAGCAAACTGGTGGTTGGAATGATTACTGAGACCATTAACAT TGCTGATGCCATTAAAGCCAGCAAGGTTACAACCTCTATGGATAATTTTGTTACATGGGACAAAACATTGAAAGCCTTTG AGGGCATGGGCATGAATGTGAGCTTTTTAATTACTCAGCTAGACCACCTCATGAAACTAGCCCTGAAACTAAAAAGGCAC AAAGAGGCAAGACTTGAACGTCTCCATGCTAATGAGAAGTTGAAAGCTCTAGAAGCAAGAGTTTTGGAAGTGAAAAAGAC CATAAGGGGACTTGATGAAGAGATTGCCATGGAGGACATGAACCCTGAGAGGGTGGAGACTATGTTTCAAGAACTGGTTA ATGCTCCTTGGTGA
Protein sequence (LotjaGi4g1v0325100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAINRNPPKKRKSSTFNYEAQSAALQRAKEIQAKLSPEFPSLLKCMHPSHVSGAFWLSLSTKFCQMHLPKADTIITLED ESGELYETKYIADKVALSGGWMRFSIAHNLHEMDVLIFHLVKPSKFKVYIVRSQGSDEVDGALGMLKLDKCRKTNDEVSS VLDTTRGNDPRMIFGDNLSQSDQLENESKDLFSETSESVINSFEQVTGIENFIIMVNGLVIYSELSERLWVKYYELCRSQ RCFLHDNLVSGLNSKLVVGMITETINIADAIKASKVTTSMDNFVTWDKTLKAFEGMGMNVSFLITQLDHLMKLALKLKRH KEARLERLHANEKLKALEARVLEVKKTIRGLDEEIAMEDMNPERVETMFQELVNAPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 375 | 365 | 2.7E-136 | – | |
| PANTHER | 11 | 375 | 365 | 2.7E-136 | – | |
| Gene3D | 19 | 135 | 117 | 1.2E-23 | ||
| SUPERFAMILY | 36 | 133 | 98 | 3.34E-21 | ||
| CDD | 41 | 132 | 92 | 5.40238E-22 | ||
| ProSiteProfiles | 43 | 134 | 92 | 10.969 | ||
| SMART | 43 | 134 | 92 | 2.1E-15 | ||
| Pfam | 44 | 133 | 90 | 3.9E-12 | ||
| Coils | 320 | 354 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0325100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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