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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0325500 |
| Transcript ID | LotjaGi4g1v0325500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G19184.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100; TrEMBL-Plants: tr|A0A0B2REX2|A0A0B2REX2_GLYSO B3 domain-containing protein; Found in the gene: LotjaGi4g1v0325500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70394405..70398915) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTAAAAAATAACCAAACCATACTATATTTTTATAAACTATGGTTTAGTTATTCCAATGCAGTAATAAAAAACTATGG TTTAATGGGCCGCTTCTTATAAATGGTTCAACCCACTGTATTCATATATAAAATTTAAAATTGTGATATCACTGGTTCAC TCTCTCATTTCATTCGCTCGAATAGCTCATACCATTTACCTCTAGTTTTCGATTCGAGCCTCAAACCCTAGGTTTCATCT ACAAATCCCTCTTTGAACTCAATCAATCCCTCTGTGATATGGTAAGGCGACTGTCCTTGGTAGATCCTTCTCTATTTACA ATAGTAATGTATCAATCTGTTCTTATCGTTATCGGTTTTTATGTTGTGTTCTTATGATTGTTTTGTGATTCCCCATCCAT TACCTAATGATGAGTCTTCTGTTTTTCAATACCGATCTAGTTTTTGGTACTTTTACTTCACTTCTGCGCTGAATCTGTGT TCTTCATTTTCAGGCAGTGAATCTGTGTTGATCAATTAAGGATCTCTCCCATTCATAAAGGATCTCGCTCATAAAGGTTC ATTTTATTTTCCCCTTATTTTTCCCCAAATGAAATAATCAGCTGAACTTGACACAACTTTTTAGTCCCACTATTTTTATA TATGTTATGATGTTATTGATTAAAGGTGAGTTGTTAATAGCTTTGCATTACATAATTTTTAGATCAATCTGTCCAACGTC ACCCTTAGGATTCATGGGCTCAACATCCTCACCCATGGCACCTGTAATGGGCGCAACCTCTTGAGTTTGATGCAACTCTG TGTACTATAAGGAAATTTGGTTGCAGCCCAACAATTACAGTTTTTGGTCAAGTGGTGGACGTTTGCTCTAATAAATGGTA TCAGTGTGAGGTCGTGAGTTCAAATCCCCCGGCTAACAATGGTGGGAGATTGTTGGACACATTTTTCCAGCGTCACCCTT TGAACCGGACCAGTTTTGAATCCTTTGAATCATCCCAGTAAAAGCTCTGTTGGTGGGTAACCCCTCCTCAGGGAGATCCC ATAATTCTCATACTCAGGAGTGAACCTAACCCCTCCTTAGGGAGATTGTTGGATGTATTTTTCCAGCGTCACCCTTTAAA CCAGTCCAGCTCTGAACTCTTTGAATCAGCCCAGTAAAAGCTCACTTGGTGGGTAACCACTCTTCAGGGAGATCCCATAA TTCTCTTACTCTGGAGTGGACCTAACCCATCCTTAGGGAGATTGTTGGATATATTTTTCCAGAGTAACCATTTGAAACAG TCCAGCTCTGACCCTTTGAATCAACCCAATAAAAGCCCAGTTGATGGGTAACCCCTCCATAGGGAAATTCCAAAATTCTC CCACCCAGGAGTAGATCTAACCCTCCTTAGGGAGATCCCAAAATTGTCTTACTCGGGAGTGGACATTCGCCGGTCTGTTC AACGTGTCACTAGCTTCTTACCCGCTAATATGAAAGTGTTTTCTTTGTATCCTAATTTTCTTTAATTCCAAAAACAAAAA AATCTCATTCATTTCATTCTTTTTTTTATATTTATTCATTTATCAACATCTCTTGATTGACAAGGGGGAGTGGAAAAGAC ACGAGCTCTCTGAAACAGTGATTGAAATATTTGAAATTTGGCTCCATTTCACAGAAATATAATATACATTTTTTTTCTCC TCTGCCACTTCTCTACTCACTCTCTACTCACTGTGAAGAACAAAGGAGACAACCATGGTAGAAGCTGTACTTAAGACACC CAGCGACAGGGAAAACCCTTCAAAGGTTTCATTTTTACCTCGTTTTTTGCACTATCTCTTTCTGTTACTGTTTGCTTAGT TCTGTATTTTGCATTTAACATCGTAAATTTCTTCTCTTTTACCATCAAATGTTTCATTTGTTTGTGTGTTGAACAGGGTA CCAGTCGCAATGCGCAGAAAAAGTAAGTAAAGTTTCTTCCTTTCTTATTTGATTTCATCATGAATAGTAGAAAACAGTGA CTCACTCAATGTTTTTACTTTCCTCTGCTATGCACAGGCGCAAGAGTGGGGGCGAAAGCAGTATATGCAGTAGAAGCACT TTCAACAATGAAGCTCAGTTGGCTGCTGTGGAACGAGCAAAAGAGATTCAAGCTAGCTTATCTCCTGAATTCCCCAGCAT TGTTAAGCACATGCTCCCATCTCATGTAACTGGAGGGTTTTGGCTTGTAAGATTATCTCACTTTCTTCATGCTTTTCCCT TTTTAGGGACAACCACCGTGAGCCAAAATCACCATAGACAGAAGCAACTTTTCTTAACTTAACTTTTGTGTCTATTCACT CTGATTTTAGCTTCATTGTGATTTTGCATTGTGCATTTAAGTATGCAGATATATCACACTTTATGATTGATATGTATTTT AAGGGCTTATTTGGTTTTCAGTTTGAATGTATTTTCAACCAACGGAGTCCAAAGCCCCTTTCACGTTTGAGGCATTGGAA TGTGTGATATCAAATTCCAATGCCTCAAAGCCTATAAGTACTAAGCAATTTTAGTCATTTGGGTAACTTTTAAAAAAATG TATTTATATTATCTTGCTAGCATTTTTATTGTTTATATTATTACTATTATTCACTGTGTTTTATGATGTCAGGGTCTTCC AAAAAAATTCTGTGAGTTGTATTTGCCTAAGGCTGATACTTTCATTGCTTTGGAAGATGAAAGTAGGGAGCTATACCAAG CCAAATACCTTGCTGAAAAGGTGGGCTTGAGTGGTGGATGGAGGGGGTTTTCCATAGCTCACAACTTACTTGAGATGGAT GTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTTAAGGTAAATGTTTGATCTTTCAATTAAAGTTAATTATATGTATT TTATTTTGTCTAAATACATTAATATATGATCTCCTAGTTCTGCACATTTATAATAATTGTTTTGGAAGTTGCAATCTTCA ATATCTTGGATCTCCACAGGTGTACATTGTAAGGTCACAGAAGCCAGATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGC TGGATAAGTGTGAAAAAGCACCAAAGAATGAACTGGATATGGAAAGTATTGCTGGTAAGTGTGGCATAGTCCTCCTTGCT TATGTAACTTGTCTGCATTTTGAAGCAAATCAAGTAGGATAGTCATTGAGGCTCTTAAAAGAACAAATTATCTGTTTAAA ATTGATGGTGGGCTACACTTTCAGCATATTTGGATCAGCTTCTCTTTCTTTATAATCAATTTTATGCCCAGAAGCTGCTG TTCTCTCCATAATTGATTTGACTTGAGAATCATAAATCATTAGTAGAAAGATTTCCAAGCATTTTAATAGTTTTGCCTCA TAAGTGATTGTGGTGCTTCCAATTGTAGAACCAATTAACCAAACACTACTAACATGTTTGGTTTACCATGCGGAATGCTG TAGAGTCAATTCTGCTTAACTGCTGACTAAATCGTGAAACCAAATATGCACTGAAAATTGTATAGATTTGCTATCTCATT TTTCAGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGAGGTTTTGGTTTCTAACTCAACTCAAACTGAACAGCTT GACCAGGAAAGTGGAGATTTAAGCCTTGCAGGGATCAGATTAGCAGAATTTCCTATCAGGTTTGAAGAAGTGACTGGCAT TGAGAATTTCAGCATCATACTAGATCGCTGGGTTATGGATTCAAAATTCACTGAAGACCATCGGGCCAAGTATTATGAGC TCTGTCGCAGCCAGAGATGTTTTCTTCATGAGAACCTTCTTGGGGGTCTTAACTTCAACCTGATGGTTGGAATGATTCAG GAGACTATTGTCATTGCTGAGGCCATTGAAGTTAGCAAGATCACAACCCCTATGGATGATTTAGTTGTATGGGACAAAAC ATTGAAAGGCTTAGAAATCATGGGGATGAATGTGAGATTTTTGCTGACTAGGCTCGACAAGCTGATGAAACTAGCCTTGA AACTGAAGAGGTACAAAGATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGATTGCTTCG GAAGTGAAAAAGACCATAAAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCTATGTTTGA AGAACTGGCTAATGCTCCTTGGTGATGTTGTGTTGTGTCCTAGTACATTGCTGCTTCTCTTCTCAGCTTGGACATAAGTT TCAATTTATGATATTATAGACAAAGAAAAAGAAATAGTTTTGTGTTTTGGATTGGGAACATGAAAGAGCTTTGAACTTCC TTTACAACTAGACAATCGTTCTGTTATTTTGTGAAGCTATGACTTCTAAGTATCTTTCTGTATATTTTGTTACATCAGTG TGCTGATGTGGATTTCAGGATTTTGGATTGTGACTATTAATTATAAGTAGGGAAACTTTTCCTTGTTACATATTTTGAAC TACATAAATATGTGGAACTCGTTTCATTCGA
CDS sequence (LotjaGi4g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGAAGCTGTACTTAAGACACCCAGCGACAGGGAAAACCCTTCAAAGGGTACCAGTCGCAATGCGCAGAAAAAGCG CAAGAGTGGGGGCGAAAGCAGTATATGCAGTAGAAGCACTTTCAACAATGAAGCTCAGTTGGCTGCTGTGGAACGAGCAA AAGAGATTCAAGCTAGCTTATCTCCTGAATTCCCCAGCATTGTTAAGCACATGCTCCCATCTCATGTAACTGGAGGGTTT TGGCTTGGTCTTCCAAAAAAATTCTGTGAGTTGTATTTGCCTAAGGCTGATACTTTCATTGCTTTGGAAGATGAAAGTAG GGAGCTATACCAAGCCAAATACCTTGCTGAAAAGGTGGGCTTGAGTGGTGGATGGAGGGGGTTTTCCATAGCTCACAACT TACTTGAGATGGATGTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTTAAGGTGTACATTGTAAGGTCACAGAAGCCA GATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGCTGGATAAGTGTGAAAAAGCACCAAAGAATGAACTGGATATGGAAAG TATTGCTGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGAGGTTTTGGTTTCTAACTCAACTCAAACTGAACAGC TTGACCAGGAAAGTGGAGATTTAAGCCTTGCAGGGATCAGATTAGCAGAATTTCCTATCAGGTTTGAAGAAGTGACTGGC ATTGAGAATTTCAGCATCATACTAGATCGCTGGGTTATGGATTCAAAATTCACTGAAGACCATCGGGCCAAGTATTATGA GCTCTGTCGCAGCCAGAGATGTTTTCTTCATGAGAACCTTCTTGGGGGTCTTAACTTCAACCTGATGGTTGGAATGATTC AGGAGACTATTGTCATTGCTGAGGCCATTGAAGTTAGCAAGATCACAACCCCTATGGATGATTTAGTTGTATGGGACAAA ACATTGAAAGGCTTAGAAATCATGGGGATGAATGTGAGATTTTTGCTGACTAGGCTCGACAAGCTGATGAAACTAGCCTT GAAACTGAAGAGGTACAAAGATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGATTGCTT CGGAAGTGAAAAAGACCATAAAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCTATGTTT GAAGAACTGGCTAATGCTCCTTGGTGA
Protein sequence (LotjaGi4g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEAVLKTPSDRENPSKGTSRNAQKKRKSGGESSICSRSTFNNEAQLAAVERAKEIQASLSPEFPSIVKHMLPSHVTGGF WLGLPKKFCELYLPKADTFIALEDESRELYQAKYLAEKVGLSGGWRGFSIAHNLLEMDVLVFHLIQPHKFKVYIVRSQKP DEVDGALGLLKLDKCEKAPKNELDMESIAGAIQGSDPENRREVLVSNSTQTEQLDQESGDLSLAGIRLAEFPIRFEEVTG IENFSIILDRWVMDSKFTEDHRAKYYELCRSQRCFLHENLLGGLNFNLMVGMIQETIVIAEAIEVSKITTPMDDLVVWDK TLKGLEIMGMNVRFLLTRLDKLMKLALKLKRYKDARLERLQAKEELEAIEEIASEVKKTIKKLDEEIAMQESPEKVEAMF EELANAPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 11 | 406 | 396 | 5.5E-128 | – | |
| PANTHER | 11 | 406 | 396 | 5.5E-128 | – | |
| Gene3D | 43 | 159 | 117 | 3.2E-23 | ||
| SUPERFAMILY | 60 | 157 | 98 | 9.22E-21 | ||
| CDD | 65 | 156 | 92 | 8.99453E-23 | ||
| SMART | 67 | 158 | 92 | 2.4E-18 | ||
| ProSiteProfiles | 67 | 158 | 92 | 10.56 | ||
| Pfam | 68 | 157 | 90 | 1.5E-11 | ||
| Coils | 352 | 386 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0325500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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