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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0329100 |
| Transcript ID | LotjaGi4g1v0329100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acid phosphatase/vanadium-dependent haloperoxidase; TAIR: AT1G24350.1 Acid phosphatase/vanadium-dependent haloperoxidase-related protein; Swiss-Prot: sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD; TrEMBL-Plants: tr|I3S4M5|I3S4M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0329100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70787475..70791302) extracted from Lotus japonicus Gifu genome v1.2.
TATATCTAAAAGCTTAGGTGCGACCGTTAGTTAGCATTTGGAACAAGCAACCAACCAAACAGTTAGTTAAGACGGCATCT TCTCAAATGAATCTCTCTTTTGTTCCCACTCAACATACCTACCAGCTTCCACATCCTTTACTAATTCTTCATAACTTTCA GCAATAGCCATGGCTATGATGGGTGAGACTGAGGTTGCAGCCATGCATTCTTCAACTTCCTTCTCATTGATCTCTGTCAA TTACCCTCTCATTTCCGCCCTCGTTGCTTTCGCTCTTGCCCAAGGCATCAAGTTCTTCACCACCTGGTTGGTTGGTATTC TCTCTCTTTTTTTCTCCTATGACTCTTAAATCCATATGACTCTTATATTATGACTCTTAAATCCAATTTGATCTTGTTGT TATGGTTCTATGATTTAGGACATGAGAAGCTTTTAACAAATAACATAATTAGAGTCAACTTATAGAATGTTTGAAAATTC TTGTATAATTGATTCTAAACCCAAAATCAATTCTAGGAAGAAGCTTCCTCTGGGTAGTTTTTAGGTACCAGAATTGATTC CGAGGAAAGAGAAGATGATATTTGGATGCAGTAGTTTTTTTTCTTCTCTTTAATTGGTGTAAACTCGTTCGGGAAACTAT GACCGTTCCTCCTAAGAGATGATCAACCTGGGGTTTAAATTTGTGTAGTCACCCTTACAGGATCTAGCTTCTCTACCACT AGATGACACGTTGTTGGTGGATGTAGTAGCTTTGGAGGGCAAGGCCGCAAGGATTAGTTTTTTTGTTTGTTTTTAAATTT AGAGAATTATATAATAGTGGTTGCTTGAGTTGATAGTGTCTCATTTTGTTCCTCCCTTTTTAAAGTTTTTTACATAAATA AAATGTTTGAATAAATTAAAATGAAAAGCCTCCTCCATCCAAACAAAAAGTGTCTTAATTGAGAAAAGTTTTTAGTTTCA CTTATGTAAGAAAAATGGTGTAAACAAGCAGCAACGAAACATTAAACAATTTTCTCAATTAAAACAAGCCCACCCTTGAT GTTTCTTAGATAATGCAGGTTTAAGGAAAGAAGATGGGATATGAAGCAATTAGTAGCATCTGGTGGAATGCCATCATCTC ATTCAGCAGTTGTCACTGCTCTTGCAGCAGCCATTGGGTTCCAAGAAGGCTTTGGAGGACCTCTTTTTGCAATTGCCTTG GTCTTAGCTTGTATTGTATGACTTCTCTTTTTGGTTCTTCAAAATTTGTGTAGAGGCCTCATAAAAGACTTGATATTTTG TTTACTATGATGTGTGATATAAGGAATATTCAATCTGATGTCCTATTTTACTTGTTAGCATGTTAGTATCAACTTTTCTT TCATGATAGTAAATTCTGGACCCCAGGAGCTACTAACAAAAGTTTCTCCCCAGAATTGATTCTGACTTTACAACCAATTG TAGAGGTTTTTCCAAATATGTACTTAGTTACTGTTAAGAAAGCATCTGATGTCCTACAAACAACTATAGCATCTTTGGTA AAAACATATTTTGGGAATTTCAAAAGCCCTTTCAGGAAATTATGGAAAAAATGATTTTTTGGCTGCAAAAGATGTACTAG GTTAGATATGAGAAATTAATGTAATGTTGTTTCATATGGCTCTGTAAATTTCTGATGAATAGATTGCTGGCAGGTGATGT ATGATGCCACTGGTGTAAGGTTGCAAGCAGGACGCCAAGCAGAGGTTTGATGTTTATGCTACTAATTTTTTCACCTATGC CATATTTTCCCCTTTATTTCTATGCACATTTCTGTCTTATATAGATATGGAATTCCAAAGCCACTAGGATTGAGCTAGTT GGTAGTGTTTTGGGTAGTTTGAACCAAAAACAAATGTTACTGAAGACTTTTTCTGTTTGCCTGTGATTGCTGTGAAATAA AACCTCATTCTTTTGTTTTGGATTTGTTTCAATGTATTTTATTATACTAAATTTGAATGGGTGAAATTTTCCCAGGTTTT AAACCAAATTGTGTATGAACTCCCAGCTGAGCATCCTCTGGCTGAAAGCAAACCGCTTCGCGAACTTCTTGGGCATACAC CTCTTCAGGTTACCATTTTGCATTTGATTGTTTCTTATAATTATTTGATGGATCTGTGTTTAACCAATGGAATTTACTGC ACCAGAAGATGGCAGTTTTTGCATTATTAGACTTTTTGCACTGGTTCCATAACTTTGTTACTAGACATTCTATGTAAATG TTGTGGAGAAGCTGACAGGAAATCAGTTAATGTGGTATGTGTAAAAAGAAGGTCTTTAGACGCATTGGTGAGAATGGTTG ATAACATAGTATTTAGACTCGTAAAGAGGGGTAGATGGAAATAAAAAAGAACTTGGGAGGAGATTGTTAAAAATGCTTAT TATTAATAATACTCCCCATAACCTGGTTTTTTATCGAGTTCAATTGCGTAGTGTAATTCATATAGTCACCCTCACTTGGT GGAATAAGACTTTTGTTGTAGTAGTTGTTATTCTATATGAGCATTTCTAGTTCCTCCTACATCTGTGAATGCTATATTCT TAAGAGATTATTCATTCCCAAGTCTGTTTTTCTAGGAATTATTTTAGAAAGCTGGAAACAAACACCCCCTGAAGTTTAAA AAAGTAGGTTAACCACGGTATTATACCAAATGCGTGTTTGGATCAGCGTTGTTCAAAAAATTGATTGTTGATTGTAGTGC CAACTCTTTTACCACTGATGATTCTCATTCCTGCTCTCCTTCATTCTGCAGGTCATTGCTGGTGGGTTACTTGGGCTCTT AACAGCAGCAATTGGCCTTCTAGGAAGAGTGATTACTAGTTAAAATTGAGGCTTCTTTTCTTGACATTCCTAACAGGTGC AATTTCAGTTCATTCCATGCCAATGGTACGCAAGTTGAACGCATCAGCATTTTCATGCAGAAATGCACTTCAACCTCTCA AGTCAGCAGTAGAATTCAAAACAGAATTTGTAGACTCCAGTGTTTGATGCAATGGAAGTATCTATCTCATAGAATCTTTT ACTTGCTAGAGTCGCAGGGTTTAAGTTTGCATACTCATTCATACTCACTTTGAGATAAAAAAAAAAAAAAAAACGAAACT CCTTTTATGAATTTGGATAACAATCCGTTCGAGCTTGGTTTCACATATATAGACTAACAATAAGTTTAATATCATCATGG ACAATCACATGTGGATATCTTCTATTAACCTCAAGTCCTGAAGCATTTAATTTCAGGTAGATATGGTAAATGAAGACTTG AAAATGGCATTAAGAACACTTTAGTCTATAGTGGTAATAACTAATAACCAGACATGCCATATTCATTGTCTCATTGAGGC CCTTGGAGGTTGGTATTCGGGTCGCACAACCCGTAATAAACGGGCCGGTTCAAGTTAATCTGCATAATAAATGATTCGGA AGAAGAGATGTCAGCCCCCTACCAAAGCTTGTGGATCACTGGGTTGCTCCACATAGAAATGAATTTAAAAAAAAAAAGCT AAAATAAGTAGATAAAAAAAGTTATGGTTTCTATCACAGTCACGTCAAGGGTTTGGAAATATATTTATCCAAAAAAGTTG GTACACTATTCCGTTATAATCATTGCAGCTTCCACTGGACATGGCACTCTTCCTCCCACGTCTCACTCTCCCTCAAAATT TGCTTATTGATATCTATCAGACTTCATCACCATCACAACCTCTTGCAATAATTCAACTTCATAAATTCACAACTACCCTA CTTCAGAACTTGTATATATCTCAGATATATGTACTCGAACCCAAAGAAATATGATACATTAATTATGG
CDS sequence (LotjaGi4g1v0329100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAATTAGTAGCATCTGGTGGAATGCCATCATCTCATTCAGCAGTTGTCACTGCTCTTGCAGCAGCCATTGGGTT CCAAGAAGGCTTTGGAGGACCTCTTTTTGCAATTGCCTTGGTCTTAGCTTGTATTGTGATGTATGATGCCACTGGTGTAA GGTTGCAAGCAGGACGCCAAGCAGAGGTTTTAAACCAAATTGTGTATGAACTCCCAGCTGAGCATCCTCTGGCTGAAAGC AAACCGCTTCGCGAACTTCTTGGGCATACACCTCTTCAGGTCATTGCTGGTGGGTTACTTGGGCTCTTAACAGCAGCAAT TGGCCTTCTAGGAAGAGTGATTACTAGTTAA
Protein sequence (LotjaGi4g1v0329100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQLVASGGMPSSHSAVVTALAAAIGFQEGFGGPLFAIALVLACIVMYDATGVRLQAGRQAEVLNQIVYELPAEHPLAES KPLRELLGHTPLQVIAGGLLGLLTAAIGLLGRVITS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 110 | 110 | 3.9E-58 | ||
| PANTHER | 1 | 110 | 110 | 3.9E-58 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Pfam | 2 | 103 | 102 | 2.1E-39 | ||
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 31 | 9 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 32 | 50 | 19 | - | – | |
| Phobius | 51 | 93 | 43 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 94 | 114 | 21 | - | – | |
| Phobius | 115 | 116 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0329100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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