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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0332800 |
| Transcript ID | LotjaGi4g1v0332800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GPN-loop GTPase 1 like; TAIR: AT4G21800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q54C25|GPN1_DICDI GPN-loop GTPase 1; TrEMBL-Plants: tr|G7IEN9|G7IEN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi4g1v0332800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71186602..71191223) extracted from Lotus japonicus Gifu genome v1.2.
AACCAACGCATAAAACCCTTGACTCCCCTACACACAGAGGAGAAAAGAAGAAGCAACAACTCTGCAAAACCTCTCTCGTC GCCAAAACTGAGCTCACAATTTCTTCCCACACCGCCGTCGCTACAACACAGCGCTGCTTCAATCGGAAATGGACGCCGAC GACGGTGCGAAGAACGCGAACCTCGACGACGCACCCATGCAGATGGATTCCGGCGACTCTTCTTCTACCGCTCAAGTACC TGCTCCTATCACGCTTCTCACTTTCTACTTTTCATATTTTCTCGTCGCTTTATCAAACGAAAAAAGAAACGAAACCCTAG CTTAATGGAGAAGCTCGCAGTTAGAGTGTGCTGTTGACTCCATGTGACTGTGCTGTTCATGGCTAATTTCATAGTTAACT TGTTATTCTAAAAATGATAAACCCTAAAAATGCTTAGTTTTCTAATGGGGCGAGTTTGAATCGAAATTTTGAATCGTGGG TATCTTGTGTGTTCATTCTCTGGTTTGGTTTTGAAGGTGAAGGACAAAGAGAAGGAGGAGCTCACAGAGACTATGAACAA ATTGCACATTGAAGGATCGTCTTCTGGGAGTGGATTGCCGAACTTCAAACGAAAACCGGTTATCATCTTGGTTGTTGGCA TGGCAGGTGATTGCTTTTACTTGATTGAAAAGCCTAATGGTGGTTTTTGCTTAGTCATATGCAGTTTTTAGTTTTTTAGT AGAACTAAGACTCTAAGAGTAAACCTCATCTGTGTTTAGGAAGTGGGAAAACAACATTCATGCATAGGTTGGTTTGCCAT ACACATTTGTCAACCCTTCGGGGTTATGTGGTGAATCTTGACCCGGCTGTGATGACACTCCCATATGCTGCTAATATTGA TATAAGAGACACTGTTAAGTACAAAGAAGTCATGAAGCAGTTCAACCTTGGCCCCAACGGTGGAATTTTGACCTCCCTGA ACTTGTTTGCTACCAAATTTGATGAGGTAAAGTTTGCTTTATTAATCTCTGAAGCGCTTTTAGCTGGTGTCTTGTGGCAT ATCTTACTAGTTACTGAATTTGTTGCTACTTAACTTTTATCATAAGGACTTATTGCTTTCAATGTGTAATCTTATGTATA TTACCAATAACGGTAAAGGATCCCCCCACTTCATTTTTATTTTGACGGCAGGGAGGTTTCCTTAAATTTGTTTGATAAAA TTTGGTTTTATTTTTCCTAATTAAGCTCTTGATGAAATGCTTGAGCTTTCTCGTTTCTTTTTTAAGTTCAACGATCCTTT TGTTAGCTGATATGTTTTGTTCCCGTCTACAGAACTTTGAATACTGTTTATGTAAATGTTTATGCTTGTCAATTTCAGGT AGTTTCTGTTATAGAAAGGCGAGCAGACCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAGATATTCACCT GGTCTGCTTCTGGTGCTATCATCACAGAAGCTTTTGCCTCCACATTTCCCACCGTAGTCACCTATGTAGTTGATACCCCT CGTTCACAAAATCCCACCACTTTCATGAGCAACATGCTGTATGCTTGTAGTATCCTCTATAAGACAAGGTTACCTCTTAT CTTGGCGTTCAACAAGGTTGATGTAGCCCAACATCAGTTTGCTGTGGAGGTATTGTTTATTTCTGATGAATTTTCTCATG TTTACTTTTAGTCATGTGTTTTGGAGACTAGTTGCTTATACAGGTAATGTGTTGTTTACTTTTGTATGTTAGCCCTTTGA GAAGCTTGAAGACTAGTTGGTATTCTTCATCCTAATGTCCATCTTGATAACTACCCTGCCTATTTTTTATCCTAGATGTT TGTTTAAAAACAAAACCAAAAATCCTTTAGACTGGGGAGCTACCTTCTGTTGGATTTCAATCTAATCAGATGTATCTTTA TGGAGAAACAATTGATCAATCAAATTGTGAAACTAGATCGAAAAATATTTTATCTTGTGCTTCCAGTTTATTGGAGAACA CAAGAAATATGCAAAGGAATCAGTTAACATGTTTCTGAATACTGTTAGGCACCACATATGTTGGGTATGGGCATTGGGAC TGAAAAATTAATGTAGTTATGTGTTAAGACAATATATGTTCGGAGCGTGTGGGGATGCTAAGGGAGAAACTCTTCATTTG GTTGTGACTTTGAGTTTGTTAAGACAATATATGTAGGGATAACTTGGGGATGTCTGCTCTGTGTTGGAGGTGCACATTTT ATGAAATACAGTAGCAAATTGCAATTAGGTTGGGGTAGACTGTCGATATTATAGTTTGTAAAATACGGAAATAAACAGAT TGGTTACAAGTTGTAGTTGATGGAAAATTATCAAATATAAAGTAGATTATTCCAAATTTCAACACATTGCATTGAAATGG AAGCAATATTGAGGGAGATGGTTATTAATTTTTCAATTCATGTTGGAGAAATTCTTGTATAGTGAGATTGAACCATTTTC CTGCCAACTTTAAGGTTTATGTGCTCCTTTGCATCTTTGAGCTTACTCTCTTTGGTTCTGCTCCAGTGTTGTCAAATATC GGCCATGGCGGCGCCATGACGTTTTTCCATATCGGGTTTTTAACATGCCGCCACAAAAAGTGTGTGGTGTTGCGGTTTGG CATGGCGGGGCCATGGCGGCCGCGATTCATGGCGGATATCGGGAAAATGGCGGAAATATGGCGAAAATTTCCGATTTTTT TGAAAAAAAAAAACTGCAAAGGGCCCATGGATTTTAATGGCCCAACTCCATATTTCAGCTTCTAATCCCCCAAATTCAGA ATAGAAACCCTAATTTCACCCAATCTCCTTTCAAGTCTCACCATCACATAGCTGCTTCCCCATCCACCTCTGACCACTGC TCCGCCCATTCCCGACCACCTGCGGCCGCCGACTACCGGCGACCACTCCGGCCACCGCGTCTCTGCTAGTGCCTAATATC TATTGAACCTCTGTTATGATATTTGCTATTATATCTATGATATTGAGCCTATATTAGATGATATAAGTTGTTATTAGTTA GCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTTTTTTAATGTGTGTATGTATAATCCTATATAATATC ATAGATATATATTTATAATTTTTGGCCGCCATGGCATCCGCCATAATTATATGGCGGTATTTTGGCTTTCCGCCATGGAC CGCCATCCGCAATTGATAATACTGTTCTGCTCTAAAGCATAAAAAAGGAATACACCAGTCTATTTGCTTTCTAATTCCCT GCCAGTTATTGTTAGTTTCGTTTTTACCCATTCTCTTACATACCTGTATGTTGAAATAACATGTTCTAGTTTTTATAGGC ACCAAATTTATTTCCACTTATTTCTTTTGTTTAATTTATTGGATGTGCAGTGGATGGAAGATTTTGAGGTATTCCAACAG GCGGCAGGTTCAGATCACTCTTACTCGTCAACTTTTGCTCAGAGCCTTTCACTTGCACTAGATGAATTCTACAAGAATTT AAGATCAGTCGGAGTTTCTGCAGTTTCTGGTACAGGAATAGAAGCCTTCTTCAAGACTGTTGAAACCAGTGCAGAGGAGT ACATGGAAAACTACAAGTATATTGTCTGAGCTTGACAGATTTTTTTATTTGTTAGCTTCTCCATTACATTACTGTTGATT TAGCATATAACTGTTGGTATCAGGTTTGGAATGGCTAAACAATTAACTTGATTGTATTTTGCAATGTTTAGGGCTGATCT GGATAAAAGACGTGAAGAGAAGCAGCGATTGGAAGAAGGCCGCAGGAAGGAGAGCATGGATAAATTGAGGATGGACATGG AGAAATCTGGTGGAGGAACTGTAGTATTAAACACTGGTTTGAAAGACAAAGAAAAGGCTAAAAGTAAAAGCAAGATGGAT GAGGATGAAGATGAGGTTGAAGAGGATGAGGAAATGGATGATGATTTGGTATATACTGAAGACGAGGATGCTATTGATGA GGATGAAGATGAGATGTGATTTTATTGCTTGAGATAGAGACAATGTTTCATTTGACATTGTGATATGCAACATGAAAGAT CCTAATCCATTGCTATCAGAATTTGATCTGTGTATAGGACCTTAGACTTTCATTTGGTACAATGATACGACCTTGAAAGT TTGACTACCAATTAATCAACCAGATTATTCATACTGGCTATCAGCATCTGGTCCTTTTCGTTCATGATTTTAACACTAAT TGAATAGATAACTATGCGTGATTTTAAGTCAACTTTTAACTTGTTTGTGGACTAACATTATTGTAGATAATAAATGATGA TATGATGTGTCATGTTGAGATTGGTTGTCACTTGTCAGTGTAAAGGTACATATCTATTAAATTTAATAAGGTTGTAAAGG GTAAACCTACATTTTTTCACTATAATTATGGAGGAATCTAAGTGGAAACCTGTTCATACATTATTATTACAGTATTATAA TTGCCATAATGTCCTTTTCATGTTTGCTCATATAATAGTTGCCATAATGTTAACCTTTACTATATGATATGATGAGTTGA TGACCCTACATGAAACTTTGGAATATATATAACTAATGATCCAATTATTATGTGTGTGTGTG
CDS sequence (LotjaGi4g1v0332800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCCGACGACGGTGCGAAGAACGCGAACCTCGACGACGCACCCATGCAGATGGATTCCGGCGACTCTTCTTCTAC CGCTCAAGTGAAGGACAAAGAGAAGGAGGAGCTCACAGAGACTATGAACAAATTGCACATTGAAGGATCGTCTTCTGGGA GTGGATTGCCGAACTTCAAACGAAAACCGGTTATCATCTTGGTTGTTGGCATGGCAGGAAGTGGGAAAACAACATTCATG CATAGGTTGGTTTGCCATACACATTTGTCAACCCTTCGGGGTTATGTGGTGAATCTTGACCCGGCTGTGATGACACTCCC ATATGCTGCTAATATTGATATAAGAGACACTGTTAAGTACAAAGAAGTCATGAAGCAGTTCAACCTTGGCCCCAACGGTG GAATTTTGACCTCCCTGAACTTGTTTGCTACCAAATTTGATGAGGTAGTTTCTGTTATAGAAAGGCGAGCAGACCAACTT GACTATGTTCTTGTGGATACCCCTGGTCAGATTGAGATATTCACCTGGTCTGCTTCTGGTGCTATCATCACAGAAGCTTT TGCCTCCACATTTCCCACCGTAGTCACCTATGTAGTTGATACCCCTCGTTCACAAAATCCCACCACTTTCATGAGCAACA TGCTGTATGCTTGTAGTATCCTCTATAAGACAAGGTTACCTCTTATCTTGGCGTTCAACAAGGTTGATGTAGCCCAACAT CAGTTTGCTGTGGAGTGGATGGAAGATTTTGAGGTATTCCAACAGGCGGCAGGTTCAGATCACTCTTACTCGTCAACTTT TGCTCAGAGCCTTTCACTTGCACTAGATGAATTCTACAAGAATTTAAGATCAGTCGGAGTTTCTGCAGTTTCTGGTACAG GAATAGAAGCCTTCTTCAAGACTGTTGAAACCAGTGCAGAGGAGTACATGGAAAACTACAAGGCTGATCTGGATAAAAGA CGTGAAGAGAAGCAGCGATTGGAAGAAGGCCGCAGGAAGGAGAGCATGGATAAATTGAGGATGGACATGGAGAAATCTGG TGGAGGAACTGTAGTATTAAACACTGGTTTGAAAGACAAAGAAAAGGCTAAAAGTAAAAGCAAGATGGATGAGGATGAAG ATGAGGTTGAAGAGGATGAGGAAATGGATGATGATTTGGTATATACTGAAGACGAGGATGCTATTGATGAGGATGAAGAT GAGATGTGA
Protein sequence (LotjaGi4g1v0332800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDADDGAKNANLDDAPMQMDSGDSSSTAQVKDKEKEELTETMNKLHIEGSSSGSGLPNFKRKPVIILVVGMAGSGKTTFM HRLVCHTHLSTLRGYVVNLDPAVMTLPYAANIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSVIERRADQL DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSQNPTTFMSNMLYACSILYKTRLPLILAFNKVDVAQH QFAVEWMEDFEVFQQAAGSDHSYSSTFAQSLSLALDEFYKNLRSVGVSAVSGTGIEAFFKTVETSAEEYMENYKADLDKR REEKQRLEEGRRKESMDKLRMDMEKSGGGTVVLNTGLKDKEKAKSKSKMDEDEDEVEEDEEMDDDLVYTEDEDAIDEDED EM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Coils | 28 | 48 | 21 | - | – | |
| PANTHER | 45 | 399 | 355 | 7.4E-185 | ||
| PANTHER | 45 | 399 | 355 | 7.4E-185 | – | |
| Gene3D | 63 | 321 | 259 | 9.4E-97 | – | |
| CDD | 64 | 304 | 241 | 6.81708E-164 | – | |
| SUPERFAMILY | 65 | 303 | 239 | 9.41E-45 | ||
| Pfam | 68 | 306 | 239 | 2.1E-78 | ||
| Coils | 310 | 330 | 21 | - | – | |
| MobiDBLite | 344 | 402 | 59 | - | – | |
| MobiDBLite | 357 | 371 | 15 | - | – | |
| Coils | 362 | 382 | 21 | - | – | |
| MobiDBLite | 372 | 402 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0332800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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