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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0335400 |
| Transcript ID | LotjaGi4g1v0335400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor family protein; TAIR: AT3G62560.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A; TrEMBL-Plants: tr|I3T169|I3T169_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0335400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71566734..71569125) extracted from Lotus japonicus Gifu genome v1.2.
CAGTATCCACTCATGAACACTATATATATAATAGAAGGCAAAAAATAATCAAAAAGCAAAAGAAAACGAAACTTGTTCTT TCCGTGTTGCGTTTTCTCCGTCGATTCTTCATCCCAATTGTACTCACAACACTGTTCAGTTTCCTCTCTCGGCTTCACCG GTTCACAGTTCCGGCGACCTTACCGGCGGCGTTGATTTCTCTGTCAAAAGAATGTTCCTGTTTGACTGGTTTTACGGAAT TCTGGCGACCCTTGGTTTGTGGCAGAAGGAGGCGAAGATTTTGTTCCTTGGGTTAGATAATGCGGGGAAAACCACCTTGC TTCACATGCTCAAGGATGAGGTTTGGTTTTGATTTTTGAATTTTTGAATTTATTTTCTTGACTCTTAATTTATATTTTTT TGAAGTAGTTGTTGATGTGAAATTAGAATTGATTTTTTTTGTAGAGATTGGTTCAGCATCAACCTACCCAGTATCCAACT TCGGAAGAGTTGAGTATTGGGAAGATAAAGTTCAAGGCTTTTGATCTGGGTGGTCACCAGATTGCTCGTAGGGTCTGGAA GGACTATTATGCTCAGGTTTGTTTGTTTTTTTTTTTTTTTTTGTTCCAATTATTTGTTCAGTTTCATGTTCATGTGAGTT TCCATCATAATTCAAAGGATGTTTTTGTAGTTTATATTATAATTTGAAGTTTCATATTTTGATTATTTTCTCCTGTTTGA ATTGTTGGCTTTAGCCGTTTTGGCTGGTTTTGGGGGAATTTGGAAAAAAGTAATAGAGATATGATAAAGGAACATGGTTC TAACTCTCTTCTATGTCTATTTATTGTTCTCCTAAATATTTATATGATTTCCTAGATTGCATCATGTTTTCCTTGATAAT TTACAAACACCAATCTCCAAATACCCCCTCTGATATTGGTGCATGATAGTCTCGAAAGCTGAACTTGTGAAGAAGATAGT GAAATTGTGCTTTGCTTAGGGCTATGGTTAAGATATATGCAAGCTGAGTGTAAATGCTAATGTGCAAATGGGATTGACAA CTATATGAATGCCTGTCTGGCTATCACACAAGAGCCTCATGGGATGAGGATGAGAATTAGGATGAGAACTGGGCCAATTT TGTTATGAAAAAACGAGTAGTTAGGGGTGGTACCAAACAACATTGGAATTTGGAAGCCTTTTATGAAAATAGGAAAACTT TCTTCTCACTTTACATGCAACAGGGTAGATTTTACATTTGGCTTTGATCTGTAATGTCAACCAAGTACTAGGAATTGCTT GGAAGCCTAATCTGCACAAAAATAGTTTCCTACTTTTCTACGTTTCGATCAACTTTTTTTTCTTCAGAATCAATTCTGAA ACCTACCTACAAGTCACTCACAAAAGTTTTTCATCAGAATCAATTTTGACTTTAGAATCAATTATAGAAGAATTTCTAAA CATGCATCAACATGTTAATTTTAGACTTTATTTTATGTAGGTGGATGCTGTAATCTACCTGGTTGACGCATATGACAAGG AAAGATTTGCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTTCTGATGATTCACTAGCAGATGTACCTTTCCTTATCTTG GGGAACAAAATTGACATACCTTATGCTGCCTCAGAAGACGAGCTACGTTATCATTTGGGTTTGACTGGACTCACTACAGG CAAAGGGAAAGTTAATATGGCTGACTCCAAGGTCCGTCCTTTGGAGGTGTTCATGTGCAGCATTGTGCGCAAAATGGGAT ATGGTGAAGGCTTTCAGTGGCTCTCTCAGTATATTAAGTAGGGAAAGTGCTCCTAGTTCCTGATTGTCATGTAAAATGGA TACTTGAATGGTAGTCTTACTTTTTCTTAGTTGCGAGACGCGTGTTTCTACATTTTGCTAGGGCTTGACAAGCTAGCGTT GCTGTCTATATCAGTTATTAAAACTGCAGAATTAATAAATCGTAGCTTGAATGTTAGAAATAGCTCCACCTATGCTCGAT AGTGCTTTATGTTTTATATCAATCTAGTTCAGAAGGAGAATACTTTGACGGCAGTAACCTTATGACACTTGAAATGATGA TGATGAAAATGATAGTTGGTCCTCCATTCCTCCCTAATATGCACCAGGTTTATCGGTCTTTATTATTATAATAGAACTTC TAAAGCTTGCAGCACAAGCTATTGGAGTCCTTAACCTAAATAGAATACAAATGATGAAATGAGTGAAGAACAAAATGCAT TTGGAACACCACGTATTTTAATTATCTACATTTTACAAGGCTATTAGACTAAAGTATCTTCGATTACTCTATCAGGAGGA GATGCTTTAGTGAACAAGTGATTTTTTTTTATAGATATATAGTAAACAAGTGATAAGTGACTTTTATGTTAC
CDS sequence (LotjaGi4g1v0335400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTGTTTGACTGGTTTTACGGAATTCTGGCGACCCTTGGTTTGTGGCAGAAGGAGGCGAAGATTTTGTTCCTTGG GTTAGATAATGCGGGGAAAACCACCTTGCTTCACATGCTCAAGGATGAGAGATTGGTTCAGCATCAACCTACCCAGTATC CAACTTCGGAAGAGTTGAGTATTGGGAAGATAAAGTTCAAGGCTTTTGATCTGGGTGGTCACCAGATTGCTCGTAGGGTC TGGAAGGACTATTATGCTCAGGTGGATGCTGTAATCTACCTGGTTGACGCATATGACAAGGAAAGATTTGCAGAATCAAA GAAGGAGCTGGATGCTCTTCTTTCTGATGATTCACTAGCAGATGTACCTTTCCTTATCTTGGGGAACAAAATTGACATAC CTTATGCTGCCTCAGAAGACGAGCTACGTTATCATTTGGGTTTGACTGGACTCACTACAGGCAAAGGGAAAGTTAATATG GCTGACTCCAAGGTCCGTCCTTTGGAGGTGTTCATGTGCAGCATTGTGCGCAAAATGGGATATGGTGAAGGCTTTCAGTG GCTCTCTCAGTATATTAAGTAG
Protein sequence (LotjaGi4g1v0335400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV WKDYYAQVDAVIYLVDAYDKERFAESKKELDALLSDDSLADVPFLILGNKIDIPYAASEDELRYHLGLTGLTTGKGKVNM ADSKVRPLEVFMCSIVRKMGYGEGFQWLSQYIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 9.6E-130 | – | |
| PANTHER | 1 | 193 | 193 | 9.6E-130 | – | |
| CDD | 2 | 192 | 191 | 1.05462E-129 | – | |
| SMART | 3 | 193 | 191 | 1.7E-20 | – | |
| SMART | 4 | 192 | 189 | 5.8E-131 | – | |
| Pfam | 8 | 192 | 185 | 1.1E-65 | ||
| ProSiteProfiles | 14 | 192 | 179 | 30.021 | ||
| SUPERFAMILY | 17 | 192 | 176 | 5.26E-43 | ||
| TIGRFAM | 19 | 135 | 117 | 2.1E-15 | ||
| Gene3D | 21 | 192 | 172 | 4.3E-60 | – | |
| PRINTS | 22 | 45 | 24 | 8.5E-75 | ||
| PRINTS | 50 | 74 | 25 | 8.5E-75 | ||
| PRINTS | 77 | 102 | 26 | 8.5E-75 | ||
| PRINTS | 122 | 143 | 22 | 8.5E-75 | ||
| PRINTS | 166 | 190 | 25 | 8.5E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi4g1v0335400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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