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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336700 |
| Transcript ID | LotjaGi4g1v0336700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein-sorting protein BRO1; TAIR: AT4G08350.1 global transcription factor group A2; Swiss-Prot: sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1; TrEMBL-Plants: tr|A0A0L9TTI7|A0A0L9TTI7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71694436..71697603) extracted from Lotus japonicus Gifu genome v1.2.
CATATCTTATTATAACACCGATGTCTTGTCTACATCGATCATTTTAATCTGCACAAAACATTTAAAATAAAAAACATGCA AGAAACTAGGCAAATTAATTAGTGAAAAGGATATAATGTAGCTTGAAAAAACGAGACAGTACTCAACACACTCACAACCT AAGCTAGTTCATATCACTAGTGTCACTACCCAACCAAGCTTTCTCTCCCCTCACTCATTCACCCCACTTTCTCTTTTTTC AACAGTACACACTTTCCTTAATCTTCCTAACTCTCATCATACTGTGTCCTAGTTAGAACTAGAAGAGTCACTCACTGTTG GCTTATGAGAATATTGAAGAAGATGAAGATGATAAGATTGTGCTTGCTGCTCATCACAAGTATGGTTTGTTATATCCATG TAACAATGGGAGATGATGCAGTTGCAGATCACCACCACCTAAAAGCCACTTCACACGAACAGATCCAGTGCACAATGTGC AGTTCGTGTGAGAATCCCTGCAACCCTGTTCCTTCTCCGCCGCCACCACCACCACGTCCACCTCCTTCCACCACCAATAA CTGCCCTCCCCCTCCTTCTCCTTCTACTTCTCCCCCCACCACATACAATTACTACTCTCCGCCCCCACCCTCTCAGTACA GCTACTCTTCACCACCTCCTCCATCATCATCCAACGGTGGTAGTGGCGGCGGAGGCGGAGGCGGAGGCGGAGGAACCTAT TACTATTACCCTCCTCCATCTAGTAACGGAAACTACGCGCGGCCGCCGCCGCCCAACCCTATAGTGCCGTACTTTCCTTT CTACTTCCACAGCCCTCCGCCACCTTCCGCCGCAGCTCCTTCGCCGTCAACAGCCTCCTCGCTGCTCTGTGCAGTTGCTC TCTCATCCTTGTTGTTGCTGTTGCTGGTTTGATAGAATGTTCAAAAAATAGCAAATAACGGCTCAGATTTGCAGATCTAG AAGAACAGGAGAGTAGTAGTGAGGAAAGGATGCAGTCATGAATTTCCCAATTTGCCCTGCAACACTCACACACGTACATA ACCTTCTTTCTTTCTTTACCTTCATTCTATATATGTTTTCTCTCTGAAATTTCAATGCCAATGTATGTGGATGGATCTGC AATTTGCTGACAATTTTTATTGTAGTTAAGCCTCACACCCATGTATGGTGTCCTTAGTATGAAGAATAATTAAATAAAAC AATATGCATATGATCAATATTGATATTATGTTCTTCTCATACTTTTTTTGTTTTTGTTTAGTAAAGTTACTTTGTGGTTA TGGTTAAATATGATGTGGTTCTAGTTTGTTAATTTTGAGAGTTTATTTTTGGGGCATGATATTTGAGGCTAGCTAGTCAG TCAAAAATTAATAACAAAAGAAGGAATTGATGAAGTAGGCTACTTTGTGTGGAAAAAAGGATCCCCATTTTTGCCGTTAA TTAATTGAATTCAATGTTGCCACTGAAATCGTTCAATGTCAATTCTTTATTTATCACTTGGTTTAACTTGTGTCCTTGTT CATTGACCCTTTGGTGCTGCTATAGCTGTTATTGCAACTATTTAGGGTGAGGATGGTGCCAATAGATATTGTTAGTGCGC TAGGAGCGTAGTTTACCGATCTTGATGCTGACTGTGGGAGCGTCTTTCTTTCTGTTTTCAAGGTATCAGCTGCTTATCCA ATAATTATATGACTAATCTTATGAACTCGGAAATTATATTAAATAAGGATTGAGGTATTTACCTGAGGTGAGGTGTGTTA ACGGGAATCGGGATTCCTACAATTATAATAAAATAGACCTTAACTTAACGTTCGGATTGTATTTTTAAGTTTTGCATCGA ATGGATAATGTTGAACACCTTTGTGTTTACAAATGTTGGAATCATAGCTAACCTTCCTCATATAATTAACAACTTAAAAT AGCAAGTCATGAAGTTTTATGTTAGAAGTCTCACATTCGCTAGAGACTTGACCAACTAAGTGATTATAAAGGGTAGAGCA ACCCTCAACTCTTAAACTAGCTTTTGAGTTGAGTTAAGCATCTCTAATCCTAATATTTTATTTTATATTTGAGACAAGTC CGAACATAATTGTGTGATGATTGTTTTCCCCATCCATGTCGTCAATCTGTTGATGGGTGAGCTCCAGCAAAACATATTGA TTCATATACATGAAGGACCTAAGTTAAATAAAGTGAAATAAAGATGATCATTATCATAATTTATTTATATTTTGTTCCTC GCCATTTTCCCACTGTGTAGTCACGATTTTCTCTGTATCGAAGTTTTTGGCTTATTGAAGAAACAGATTACAGATGCATG GAACGATAACATTTTCTTCATTTTTATTATTGGGTTATGTCATGCACGTTTCGCAAAGATTCAAACGTTTTTTTTATCAA ACAAAATTATAGAAAATGTGTTGGTAAAAATTAGCTGGAAGTCACGTTAGCCCCTATTATAATGCTGAAATGGACCCACC CGACTCATACTGCAACTGTCATCCATATATCCAAAGCAACACTCTCATCATCAGTCTCTCTTTTACTATTCCTGGTGCCC CCCACTGCTAGTGCTTACACATAGACCTGGTCCCTAACATAAAAATAGATGTCCCTTTTTTTATGATATCGATTAATAGA TAAATATATTGTGTTAACAAGCTAAAATCGAGCTAATAAGAGCTTGAAGTGAAATGTTTTAAGAATTTGAAGCTTTAAAT CAATTGAAATTCATATTTCTTATTAATTTCAAGATTTACACATTTTGTGTGGGAGGGAGGGAGCTACCAAACTTCTAATT GTTTAGTTTATTAACTCAAACACCTCTTCCTTAATTATTTCCACATTTTGTCGCATCATAACATTTTGTCCTTTCCCTTG TAATTGGGGTGGTTAGTTTTTTTTTTTTTTTAATCAGCTATTCAATATGATTAATTCATTGACAAAGTTGTTAATGGATG TAAATGTTTACTTTCAAAGTGTAACAAAAAAAAAGAGTGAAAGCTTGGGCTTAGGGGGGGAGTTGGGTTTGGGGCCCCCT ATGGGGCTCCGCGCCCCACTTAAAGTGGGGAAATTACGGAAAAAACCCCTTTACAAGAATACGGAATATTAAATTTCGTA TTCAATACGGAATATAAAATTCCGTATTATATTACTATGTAATCGACA
CDS sequence (LotjaGi4g1v0336700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATATTGAAGAAGATGAAGATGATAAGATTGTGCTTGCTGCTCATCACAAGTATGGTTTGTTATATCCATGTAAC AATGGGAGATGATGCAGTTGCAGATCACCACCACCTAAAAGCCACTTCACACGAACAGATCCAGTGCACAATGTGCAGTT CGTGTGAGAATCCCTGCAACCCTGTTCCTTCTCCGCCGCCACCACCACCACGTCCACCTCCTTCCACCACCAATAACTGC CCTCCCCCTCCTTCTCCTTCTACTTCTCCCCCCACCACATACAATTACTACTCTCCGCCCCCACCCTCTCAGTACAGCTA CTCTTCACCACCTCCTCCATCATCATCCAACGGTGGTAGTGGCGGCGGAGGCGGAGGCGGAGGCGGAGGAACCTATTACT ATTACCCTCCTCCATCTAGTAACGGAAACTACGCGCGGCCGCCGCCGCCCAACCCTATAGTGCCGTACTTTCCTTTCTAC TTCCACAGCCCTCCGCCACCTTCCGCCGCAGCTCCTTCGCCGTCAACAGCCTCCTCGCTGCTCTGTGCAGTTGCTCTCTC ATCCTTGTTGTTGCTGTTGCTGGTTTGA
Protein sequence (LotjaGi4g1v0336700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRILKKMKMIRLCLLLITSMVCYIHVTMGDDAVADHHHLKATSHEQIQCTMCSSCENPCNPVPSPPPPPPRPPPSTTNNC PPPPSPSTSPPTTYNYYSPPPPSQYSYSSPPPPSSSNGGSGGGGGGGGGGTYYYYPPPSSNGNYARPPPPNPIVPYFPFY FHSPPPPSAAAPSPSTASSLLCAVALSSLLLLLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| TMHMM | 12 | 29 | 18 | - | – | |
| Phobius | 23 | 29 | 7 | - | – | |
| Phobius | 30 | 175 | 146 | - | – | |
| PANTHER | 41 | 190 | 150 | 3.4E-19 | – | |
| PANTHER | 41 | 190 | 150 | 3.4E-19 | – | |
| MobiDBLite | 62 | 109 | 48 | - | – | |
| MobiDBLite | 62 | 124 | 63 | - | – | |
| PRINTS | 63 | 84 | 22 | 2.3E-10 | – | |
| PRINTS | 84 | 100 | 17 | 2.3E-10 | – | |
| PRINTS | 101 | 118 | 18 | 2.3E-10 | – | |
| PRINTS | 146 | 171 | 26 | 2.3E-10 | – | |
| Phobius | 176 | 194 | 19 | - | – | |
| Phobius | 195 | 195 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0336700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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