Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0337400 |
| Transcript ID | LotjaGi4g1v0337400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G06770.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0B2P5F6|A0A0B2P5F6_GLYSO Putative polygalacturonase; Found in the gene: LotjaGi4g1v0337400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71785111..71788343) extracted from Lotus japonicus Gifu genome v1.2.
TGTGAAGGGACCATTAGCCCTCCCCCTTTCTGTCATCTGCATGATTAATGCTTATAATATTCACTTACTTGCATAAAGTT CTCCCTGTCCCTCTCCTCTGCCTTCTTCTTCTTCTTCTTCCCTATCATATTCTCTCTCAGCCTCTCTAATTTTTTCCCTT TTTGGTTCTTTCTTGGTCCTTGAGCACTTCCTCTGCCTCTTTTGTCAGAGGCTTTGACCAATAAAATGCTTGTACGTACG TTTCTCTGCTTGATTTTGTTCAGTGTTTATACTTCATAGTTTTATATTGCTTTCAGGTTGATTGATGTGAAGCAAATTTG ATATCAAATTTAAATCTTTGGTTGAATTCTATATGTTTGAGTAAATTTTCAAGTGTTCCAATGACACGGGTCCTCTGCTA CGTTTTGTTTTGTTTTTACTCTATTGGGGTTTGGTCTTGTTTCTGCCAGAGGCAATGACATTGGTAGTTGCTGTTGATGG TAGGCTTCAATAAAAACCTATATGATCTGATAAACTTGCAAACTTTCTTTTGAATTGTCACTTTTTAAAGCTCTTAGTGG TTTCAATTCTCAACTGCTGAATATAATGTCTCTTGTTTTGATAAGCAATCTGATATTCTGTTTCTAGTCTTTCTCAATTG TTTTTGAATTCACTGACCCCTAGTGTTGCATTCAACCTATGATTGTTTCAATTTCTTCTCAATTGTTTTTATTTGCACAT TCTTATTGGAAATGCTTATGAGTTATCTGAGTTATTTACTCAGGGAAGATGATTCTTTGTCTCTACTTGTCTATGAGCCT ATGATGAATAATTGTATATGTAAGGTATCTGATGAGAATCATTAATTGGATTGTTTTATTTTGTTTTGTTTTTGAATCCA CATTCAGGTGGCATTGCTGTTGCTGCTGGCTTTGAGCAATGAAGTCAAGGTGAATGGTGATGTTGGAAGTGTAGCACATT GTGAGATTGCTCATGGACTAAAACCAAGACCACACACTGTCTCCATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACA CTGAACACTATTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCATTTTCTGACAAGGGTGGAGCTCAGCTCTATGTTCC CCCAGGAAAATGGTTGACTCAAAGTTTCAATCTCACAAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTG GATCTCAGGTATTTTATATTATACCTTTTACTTCTTTCTTTTTTGTTCTTCACTAGCTTTTGATTATTGTCTTTTTGGCT GATAGAGATAGTACATATCAGTGTTGTCAAATAGCTGTTCTAGCGGTGCTATAGCGCTATAGTGTAGCGCTTTTTTGGCT TACCGCTATTACAAGCTACTTGCCGCTTTTTCCACTTTAAGAGGCTAGAAATAGCGGATTTTTAACTTACCGCTATAGTC TGCGATCCGCGATTAACAACACCGATACATATAACATATTCCAATATAGGAGTTAGTTACTCTTACTCAGAAGTTGTTTT TTAAGACTTGTGTATTACATTATATTCTTACTTTGTTAGGATCCATATCACTCGGAAGTTGTTGATCCGCTGCCTTCGTA TGGCCGCGGAATTGAAGTCCCCGGAGGAAGATATCAGAGCTTGATAAATGGATACAAGTTAGAAGATGTTGTCATAACAG GTTTTATTCCCTACCAAGTTTTGCTTCTTACTTCTCTTGCAAGCAGTTCTTCATTCAATTTTCCTCCTCATGTTTCTGAC TTGAATGAATTTTCATGTTAATGTACATTGCTAGGTAATAATGGAACCATTGATGGAATGGGATTGGCTTGGTGGGAATC GTTTAGCTCTCACTCGCTGAACCATAGCCGTCCGCATCTGATTGAATTAGTAGCATCTAGTCATGTGGTAGTTTCAAATC TTACATTCTTGAATGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGGCATGTTCTTGCGTCTTCTGAAAATTACTAG TAATTCTTATATGGACAGTGATATTGACTCGATTATATGTGTTGTGATACAGCTATGTCCATATTCATAATCTTACAATC TTTGCTCCTCCAGAATCTCCTGATACTGTTGGCTTAGTACCAGGTTTGTAACATATTCAATAATCTATTACTAAACTTTA TAAAAGGTCACTTAACTAACTCTTGTGCGCTTTGTGTTTTCAGATTCGTCCGATCATGTTTGCATAGAGGACTGTGTAAT TGCCACAGGCTATGATGCAATTGCTCTCAAAAGTGGCTGGGACGAGTATGGCATAGCCTACGGCCGGCCGACGGAGAATG TACACATTAGAAGGGTGGACCTGCAAGCTTCTTCTGGCTCCGCTCTCGCATTTGGAAGCGACATGTCTGGTGGTATTTCA AATGTTCTTGTGGAGAATGCTCATCTCCACAACTCAAATGGCGGCATCGAGTTTAGAACCACCAGGGGTAGAGGTGGTTA TATGAAGGACATCATCATATCAGATGTAGAAATGAAGAATGTTTACACAGCAATTGCTGCAAGAGGCCATTGTGGGTCTC ATCCTGATGATAAATTTGACCCCAATGCTCTCCCAGTTTTGGATCACATCATTTTGCAAGATATCACAGGCACAAATATT ACCATTGCAGGAAACTTTGCTGGACTTCAAGATTCCCCCTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATGAA CTTTGCTTCCTCTATCACTTGGGAATGCTCGAATGTCTCCGGATATTCAGATTCTGTTTTCCCCAAACCCTGTCCTAATC TGGAGAGCCATTCTGATTCTTCCTCATTCTGCCTTTCCATGCTCTCCATGCCGAGTACCGGTAGAGAAACAGCAGTCATG TGATAATTTTTATCTACCAAAGGCTCATATACTTGAGTTCTCTGCATGATGTCGATGAAAAAGTGAATATCTTGCTACAA GCCACATTCTTTTCAATGAGAAAGTTATTTTGATTATTTATTTTTTCATCTTCAGATTTACATTCTTGTGTGCTGCAAAC AGCACATTATATGTACAGTTCTATTATTCATTCATGTATAATGAAATTTTGGTAATACCCGCAACAGGATTCAATCTGAT AGTTTTTCTTTTGCGCTATTCCTTTGTGATTTCACTGTCAAGGCCAATTAAAGAAGGATAAACTTGGAGCATATTTATCC ATGAAGGTAAAGAGTGATGTTGCATAATTTTAA
CDS sequence (LotjaGi4g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTGGCATTGCTGTTGCTGCTGGCTTTGAGCAATGAAGTCAAGGTGAATGGTGATGTTGGAAGTGTAGCACATTG TGAGATTGCTCATGGACTAAAACCAAGACCACACACTGTCTCCATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACAC TGAACACTATTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCATTTTCTGACAAGGGTGGAGCTCAGCTCTATGTTCCC CCAGGAAAATGGTTGACTCAAAGTTTCAATCTCACAAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTGG ATCTCAGGATCCATATCACTCGGAAGTTGTTGATCCGCTGCCTTCGTATGGCCGCGGAATTGAAGTCCCCGGAGGAAGAT ATCAGAGCTTGATAAATGGATACAAGTTAGAAGATGTTGTCATAACAGGTAATAATGGAACCATTGATGGAATGGGATTG GCTTGGTGGGAATCGTTTAGCTCTCACTCGCTGAACCATAGCCGTCCGCATCTGATTGAATTAGTAGCATCTAGTCATGT GGTAGTTTCAAATCTTACATTCTTGAATGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGCTATGTCCATATTCATA ATCTTACAATCTTTGCTCCTCCAGAATCTCCTGATACTGTTGGCTTAGTACCAGATTCGTCCGATCATGTTTGCATAGAG GACTGTGTAATTGCCACAGGCTATGATGCAATTGCTCTCAAAAGTGGCTGGGACGAGTATGGCATAGCCTACGGCCGGCC GACGGAGAATGTACACATTAGAAGGGTGGACCTGCAAGCTTCTTCTGGCTCCGCTCTCGCATTTGGAAGCGACATGTCTG GTGGTATTTCAAATGTTCTTGTGGAGAATGCTCATCTCCACAACTCAAATGGCGGCATCGAGTTTAGAACCACCAGGGGT AGAGGTGGTTATATGAAGGACATCATCATATCAGATGTAGAAATGAAGAATGTTTACACAGCAATTGCTGCAAGAGGCCA TTGTGGGTCTCATCCTGATGATAAATTTGACCCCAATGCTCTCCCAGTTTTGGATCACATCATTTTGCAAGATATCACAG GCACAAATATTACCATTGCAGGAAACTTTGCTGGACTTCAAGATTCCCCCTTCACCAACATATGCCTTTCCAACATAACC TTGTCTATGAACTTTGCTTCCTCTATCACTTGGGAATGCTCGAATGTCTCCGGATATTCAGATTCTGTTTTCCCCAAACC CTGTCCTAATCTGGAGAGCCATTCTGATTCTTCCTCATTCTGCCTTTCCATGCTCTCCATGCCGAGTACCGGTAGAGAAA CAGCAGTCATGTGA
Protein sequence (LotjaGi4g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVALLLLLALSNEVKVNGDVGSVAHCEIAHGLKPRPHTVSILEFGAVGDGKTLNTIAFQNAVFYLKSFSDKGGAQLYVP PGKWLTQSFNLTSHLTLFLEKGAVIIGSQDPYHSEVVDPLPSYGRGIEVPGGRYQSLINGYKLEDVVITGNNGTIDGMGL AWWESFSSHSLNHSRPHLIELVASSHVVVSNLTFLNAPAYSIHPVYCSYVHIHNLTIFAPPESPDTVGLVPDSSDHVCIE DCVIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVDLQASSGSALAFGSDMSGGISNVLVENAHLHNSNGGIEFRTTRG RGGYMKDIIISDVEMKNVYTAIAARGHCGSHPDDKFDPNALPVLDHIILQDITGTNITIAGNFAGLQDSPFTNICLSNIT LSMNFASSITWECSNVSGYSDSVFPKPCPNLESHSDSSSFCLSMLSMPSTGRETAVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 11 | 10 | - | – | |
| PANTHER | 3 | 447 | 445 | 3.3E-255 | – | |
| PANTHER | 3 | 447 | 445 | 3.3E-255 | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 457 | 438 | - | – | |
| SUPERFAMILY | 29 | 431 | 403 | 1.41E-89 | ||
| Gene3D | 29 | 423 | 395 | 3.4E-103 | ||
| Pfam | 136 | 417 | 282 | 2.0E-30 | ||
| SMART | 184 | 206 | 23 | 1500.0 | ||
| SMART | 234 | 255 | 22 | 870.0 | ||
| SMART | 268 | 290 | 23 | 1800.0 | ||
| SMART | 296 | 317 | 22 | 360.0 | ||
| SMART | 325 | 346 | 22 | 3800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0337400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…