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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0337600 |
| Transcript ID | LotjaGi4g1v0337600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT3G16810.1 pumilio 24; Swiss-Prot: sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24; TrEMBL-Plants: tr|I1MRL9|I1MRL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71808554..71815604) extracted from Lotus japonicus Gifu genome v1.2.
CGTAAACCTCAGGTTTCATCGACAGCTAAGCTATAGTGGTGACTAGAAACAACTAACAGAGGCGCTCCTTCATACAGAGC TTCAACAATGGCGCCGAAGAACCAGCACGACGGAACCCTAAAAAAGAGGAAGCGAAACACCACTGAACCACCTCACAAAT CTCCGTCCAAATCCAAGGCACCCACCAAGTTCGCCGCCTCAAAGAAGCACAAACCTAACTCAGCTGGTAAAGAGAAGAAT GAAAAGCCCACGGTTCCCGTCACTGGCCGAGAACGTCGAATCCAATCCAAGGTAACTAACTGAATTCATATCTTGTTTTC ATTTGCGGGTTTTCGCAATCAGAGATTGCTTGTTTTGATATTTTTTTTGTTTTGTTTCAGGAACTTGCAGAGGCTAGAAA GAAGAAGAGAAAGCGGCATTACACTCTTGAACAAGTAAGTATTATCCTCATATTCTACTCTATAATCTATACGTGTATAT ATTGTTCTTTTATGAGATGAATTGAAGCCTTGACAGTTGACATTATAGCATAGTTAATTTCACTATGTGTTGTTTTCTTT CAATTCTGGCTATAATTGAATGGAATATACTTAATTCTGATTAGGAACTTGCGCGTCTATGGGAAAAGATGAGACGTCAC GAGATTGCTAAAGAGGATAGAGCTAAGTATGTTCCTATAGAAAACATATCAAGGACTGATAGTGATATTGTATGCTAAAT GCTAAGCCTTTTTTTATCCTTGTATCTTATTTAGGTTGGTGACAGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCTGAG ATTGCGGGGTCTCATGTTTCTTCCCGTGTCCTTCAGGTATTTTTTTGAAGAATTTTCGGTTTTACGTCGTTTTTAGACTT GCTTACAGTTTTAACCTTTTGCTTTCTTTTTGTTTTGATTATTGAAAGACATGTGTCAAGCATTGTTCACAAGCTGAAAG AGATGCGGTGTTTGAGGAGCTTCAGCCACATTTTCTGAATCTAGCATATAATGCATATTCTGTTCACTTAGTAAAGAAGA TGCTTGACAATGGTAATGGTCTACTTGAAGTGATAATGGATTTATTACTAATAAACACTGAGTAATGATGAGTTTTCTGA CTCTAATTGGTCGTCCTCCGTTTTCAGCCTCCAAGAAGCAACTAGCTGGCTTTATCTCCAGTCTTCGTGGTCATGTTGCT CCTCTTCTTCGCCACATGGTTGGATCAGTTGGTATGTAACTTATGTTTTGGCAGTATATTGCAGTTGTTCATTGTTTACT TCAGTTTTTCGGAGGTTTTTTAACGGTTTACTGGGGGGAAGCTTTTCACTCTTTTTGGATGTATAAAGTAGCATATATAT TGACATGAAGTTTAATTTGAAGATGGCTAGTTTAGGATTTGAGGGAGACTAACAATGAAGAAAACGGGGGGAAATCCATA AATCAGTTTTCTTATCACCACATTTTTTTTCAATTTTCATGCACTGATACCAATTGTTAATGATTCAAACATTTCAGTTG TGGAGCATGCTTACGAGCTGGCAAATGCTGCACAAAAACAACAGCTGCTTTCGGAATTGTACTCCACTGAGCTTCAGCTG TTTAAGGACCTAGTCTCATCGAAGGAGAGCAGGTAAAAATTCAGCAGTTAGGATTTACATTATAGCATTTGAAATAATGC TGGATCAACATCTCTTCTATGTGTCCCATTTTAAAAATAATTCAGAGATAATTACTGGAATTTAGAATATATGGTATAAT TATTCTTGCGCAGTGTGTGTGTAATGCAAAAGGACTTATCCAACGTCTGCAAACTTACATAGAAAGGAATGATGGAGTCT CCATTTCCAACTTCTTTTATTTTATTGAGACCTGCTTGTATTTGAATGCCTTTTGGGGAGTTTTGGTAGGGGCCATGGGT TATAGAACTGGGAGGCAATATCTGCAACTTATGCCATAGGTAGTAAATTAGTTTTTGCTTTACTGGAGAGTTTTATGTTG TGCACGTATTAATAATTCCAAGGCTTCTATAGGTGAGTAAACTGTCAGACTATTGCTATTAACAGTCTATAATTTTCTAA CAAAGTTTCCCTTAAAAAAAGTGAATACACATTACTTTGATTTAAATTTGTTTGGCATTTTTGTTTTACGAGGCTGGCAA TCCATAAAGCTGGCTCAAATATTTTTTTTGTTGCAATAATTTCTCCTCTTCTTGGATTGATATGATCTCTTGATTTAACT GACCTTTACTAGATGGCATTTATTCGTTGCTTTACCTCTTGCTGGAGCTTTTCCCCTTAGCTTTTAATTGCATGTCAGGT TGCTAGATATAATGTCCAAGTTGGATCTACAAAAAGGTTCAGTTTTGCGCCATATGGCATCAGTGATTCAGCCAATCTTA GAGAAAGGGATTGTTGACCACTCTATCTTACACAGACTCTTGCTGGAATACTTTACCATTGCTGGCAAGGTATTTATCTC CAATTCCCCAGCCCATAATTCTGCGTACTTCTTGTCACAGCCAACATGTTTAACCATGGCAATAGCTTCTTTTATCTAAG TTAAGTTTTTTTTGAAGACCTCTGTCGCAGAGATAATCCAACAGCTATCAAGTCCTCTCCTTGTTCGAATGATTGGCACA AAGGATGGAGCCAAAATTGGAGTTCTGTGTGTAAAATATGGGAGTGCCAAGGTTTCTGTAGCTACTTTTTTTCTCATCAA TAGAAATGTGTAGAGTACTCATGATGATTGAATCTGCTGAATCACTCATCTTCTACTTCGCTTTCCCCTTTTAGGAAAGA AAGAAGATTATCAAAGGATTGAAAGAACACATAGGCAAAACAGCTTACCATCAATATGGGTGTATGGTAAGCAATTTGAC TCTCCAGCTATGTTTTGTTGCCGAGCCTAGCTATGGTATTAGGTATAGTTATGCTTTGCATCTATGGTAAGTCTGAAGTT TTCATGCTGAAGCTTCCTCCTTCTAAATAAGAAAGATTTGGTCTTCTGGAACTAGTTCAAAATGGACAAACTTAAAATTA GTGAATTTGGAAATAGCTGCAAATGAAATTCAGACATAGAGGCTTACATGGTTGTTATGAGTTGGCATGCCTGCTTAACA TTTATATGCCTGCGCTGTTCCTTGAGTCGTCCATGGCAAATCTATTGACTCAATAGTTTCTTTCCATAAGTAGTTGCTAC TGTACTCTTACTCTACTTGTTTTGGACTAATGTGTTGAGTTTCCAAAGAGGCAATATACCACCCCTGGAAATCAGCGAAA ACAAATCATTATGTCTGCAACTTCTAATTCAGATTAATATCAATACTTAATTTGTTTAATTTAAATTTCAGGTGCTGGTT TGCATCCTTTCTGTTGTTGATGACACAAAACTGATAACAAAGGTGTGTGTGGCTTTGCTCTGATTCTGATTTTCTCGTAA ATAGTCATTTTTTCTATATAGTGAAATTTTTGTTTCATATTTAGCTTCATTCTCATTACAGGTTATCATTCGTGAGCTTC AATCAATACTAAAGGAGCTTGTTTTGGATAAGGTTTCTTTCTTTACACTTCACATATGATGTTTATAAGCATTATGAAAT AGATGCTAGTATAGTTTTTATCAATCAATAAGGACATCCTTAAAATCATTATATGCATATGAGCAGTTAGCATTTTTTGC TGTTTTTTTTTTCAATCCTCCTGCCCTAACTTTGTCTATTTTAATTTGGTGCGTCGGAAAACTCCCCAACTTCGTCTATA AAACAACATATAAATATTGTTTATTGCATATTCTCATGATACTGGTTATGATGTTTTACAGAATGGAAGACGTCCCTTAC TCCAATTACTACATCCTAATTGTTCACGCTATTTCAGTCCTGAGGATCTTGCTTCTCTGAATTCTTCTATACCTTCTCTG TCTCTCAAGGTTATTTTTTAACCTATCCTTTCTACTTTGTTTTTGGTACTTCCAAGCAGCTATATTAGTCACACTTTTTG TTTTCGTTTCTGTCAGGATCAGTCAGAAACAAGCTCTCAGACAGAAACTTCAAAGGCTTCACTTGATGACAATGAATCCA ACGAAGACAAAGAAGTGACAGTGGATGAAGTTAATAAAGATAAAACATCTGTGGATGATTCTGACCTAGCAGAGAGTGGG AAAAAAGACCCATTAGTTAGAAGGCAAGAGCTTTTGATCAATAGTGGACTTGCAGAGGTATGTTGCTTTACTTTGCCTTT CCTTAACTTTTTTTGTTCAGATTCAATTGTTTTTATAAAACGGGTTATTTACATTTTTTATATTGTTGATACAATTATAT TGATTTTGGTCCCGCAAAGCTAGGGCCAGATCGATTATTTGAATTGTGAGATTGTGTTGAAAATGCTGTTTGATTGTAAT TTTCTTGCAGAGTCTTCTTGATGTATGTACTGAGAGTGTGGGAGAACTGATACGGTCAAATTTTGGCAAAGAGGTCTTAT ATGAGGTAATCAAAATGATGTTGACATTAGAATTTCACAATTTCTAATAATTTGGTTCTGAGCATTACCTTTTGGGTGAA TTCAACTGCGCATTCAGGTTGCAACAGGGGGTTCCGGTGGCATACTACACCCAACTTTGGACGATAAGATTAATTCTCTT CACAAAGCAATAGCATCTCTTGCAGCATTGCCAAAATCAGAAGATTCAGAAGAGGAGCATGTCCTTGAAAATTTCCATTC AAATCGGACCATTAGAAAACTAATTTTGGATTGCCCCAGCTTTGCTTCCACATTATGGGAGGAAGCTTTAAAAGGGAAAT GTGAGTCATGGGCGCATGGTCACAGGTAGGCTTCATTTGCTCTTGTATTATTCTTTAATGAGATAAGGGTACTAAGGTCT ATGATTTCTTATGTTTTTTTTCCTCTTGATACTCTGATTGCAGCTGTAAGGTTATTTCTGCATTTTTGGAATCACCAGAT TCTGAGGTACAGAAACTTGCAAAAAAAGAGCTGCAGCCATTAATTGATAATGGAATTCTGAAGAACCTGAAACCCACGGA ACAAGCAACCCAATAATTTCCTTGCATGGAGAAAAGAACTACAACTCAATAGGACAGTGTCGGCGCACAACATCAGTAGC TAATACACCGTTTAAGTTATGGGTTTCTTTCTGATTTGATTGCATAAACTAAATTTTAATTAAAAAGCTTCTGCTGTTGT AACCCTGATAATCAAAAGAAACAGCGCAAGTGCATTAACATTACTTGAAGTAATGACCTGTTTTTGCTCATTTTCCCTTG CGGCAGTTTTGCTATTACCATAAGTGAATGCTACCGGCCTATTATACCATGAATTTTTTGCGGCCTTTTGGTATTCAGCT GTTTAATTTGATTTTTCGAGCTGTTATGTACCATACTTTACACATTAATCATTATATTTTTTACCCTGAGGTTGGGAAGG AGTAGCATATATATCATGACAAATTCATAATGAAATGCATTTACTTCTGTAAACTAGCAAGAATGTGACAATCACATTTC CTTAATTGAATGTGAAAATGCTAAGAGCTAATATCATGATGGGACAAAAGCATATATGCTTGCAAACGTGCTCCTTGCTC TGCCTTCAAAAACAGGGGAGGCATGCTGCGCTCCTCTATTATGTCTGTGCAGCATACTAGTTGTCTGCAAGTACCAAAAT GTTGAAGAATTTTTGAAAACATGTTCCCTCAGATGAGGGTAGCCTTGGTACAAATAATCTGATGGATTGAAAACAGGGGT TTCTTTGTCAAATCTATGCATTGACTTGCTTCTTTGTAGATAGGCAACCGGATTGGAGAGTGGAGATTCCTTCCTTGACA TTGAATTTGTTCGCATACAGTTCTCTACCACCTTAGCCTCCTCCTTGAATCTCTCCCTCATCTCCTTAATGTTTCTCCAA AGTTTAAAAGATCTTGACCTGCTGATAATACTCCATGCCTTAAGAACTGAACCATTGGAGCTGCTAGGGACATTGCCGGT TGTATAAGGGTTTCTTCTGCACTCAAAGCAGAAATGCTTACACCTTTCCAAGTCAAAGGGCTTTCTCTTTGCTGTGTTAG ATAGACATGTGTATGCCTGTAGAAAAAATGAGGGGCAGGGGGGATAAGATTGTATTTCGTGCATGTTTGGAAACTGCTAT ACAATTCTGAAGCCAGAATCAATTATGACATAAACTCATCAGTTCCAAAATGGATTTTGACGAAAGAGAAACTGATCTAA ATGAGTTAGAAACCCATCATTTGATCGAAATCTAGAATACAATAAAAATGAATGCCCATTGTAGAATCACCAAAATTGAA TGCTCATTGCCTCATTGTTATAGTACTTATCATAGTTGCAGGCTAAAGTGACAAACCATAAAAGGAAAAGAAAATATCAG ACTTACCTCAGAAACAAGCTTGAAAGCAATTTCAGCCTTTGGATGTTTATTCTTGTCAGGATGAAGTTGCAAGGCTACAA ACCAGAAAAAATGAAAAATGAAAAAACTCCACATTGTTCAAGAGAGAGAGAAAATGTAGAATGCAGACAACCATAAAACC AGTTATCAAATCCTTACCTAGTTTATGGTAACGCTTGCGAATGGCATTTACCCCTGCATTTTCTTCCACCTATGAGAACC CAATAATGAAGAAAAATTGCATCATAAGAAAGAACCCAAAAATGTGGTACCTATTATGCATCAACAAGAATGTTTCAAGA ACTTACTCCAAGAATGCAATACCAGTCAATGAATTTTGCCTTGTCTGTGTTAGAGAGAATCCTATGAGCACACACCGCGG AACGCGTGGAAATGGAGCAAATGTCTGATACCAACTTGGCCTTGGAATCTGATTCTTGTCCCATTTGAGAGATTATGGGA ATGTGGATACAGTGAGCGACAAAACGTGAATCAGGGTTACAAATAGTGAAAGAAAGGTGGTTTCATATTTTGTTGGTTTT CAGAAACAGAGGTTTTTGCGGTTAAGAAAATAGAGCAACCTTTGCGGAGGAGATTTTTGACACTGGATTGTTATCAGTTG GTGGGATTATG
CDS sequence (LotjaGi4g1v0337600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCGAAGAACCAGCACGACGGAACCCTAAAAAAGAGGAAGCGAAACACCACTGAACCACCTCACAAATCTCCGTC CAAATCCAAGGCACCCACCAAGTTCGCCGCCTCAAAGAAGCACAAACCTAACTCAGCTGGTAAAGAGAAGAATGAAAAGC CCACGGTTCCCGTCACTGGCCGAGAACGTCGAATCCAATCCAAGGAACTTGCAGAGGCTAGAAAGAAGAAGAGAAAGCGG CATTACACTCTTGAACAAGAACTTGCGCGTCTATGGGAAAAGATGAGACGTCACGAGATTGCTAAAGAGGATAGAGCTAA GTTGGTGACAGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCTGAGATTGCGGGGTCTCATGTTTCTTCCCGTGTCCTTC AGACATGTGTCAAGCATTGTTCACAAGCTGAAAGAGATGCGGTGTTTGAGGAGCTTCAGCCACATTTTCTGAATCTAGCA TATAATGCATATTCTGTTCACTTAGTAAAGAAGATGCTTGACAATGCCTCCAAGAAGCAACTAGCTGGCTTTATCTCCAG TCTTCGTGGTCATGTTGCTCCTCTTCTTCGCCACATGGTTGGATCAGTTGTTGTGGAGCATGCTTACGAGCTGGCAAATG CTGCACAAAAACAACAGCTGCTTTCGGAATTGTACTCCACTGAGCTTCAGCTGTTTAAGGACCTAGTCTCATCGAAGGAG AGCAGGTTGCTAGATATAATGTCCAAGTTGGATCTACAAAAAGGTTCAGTTTTGCGCCATATGGCATCAGTGATTCAGCC AATCTTAGAGAAAGGGATTGTTGACCACTCTATCTTACACAGACTCTTGCTGGAATACTTTACCATTGCTGGCAAGACCT CTGTCGCAGAGATAATCCAACAGCTATCAAGTCCTCTCCTTGTTCGAATGATTGGCACAAAGGATGGAGCCAAAATTGGA GTTCTGTGTGTAAAATATGGGAGTGCCAAGGAAAGAAAGAAGATTATCAAAGGATTGAAAGAACACATAGGCAAAACAGC TTACCATCAATATGGGTGTATGGTGCTGGTTTGCATCCTTTCTGTTGTTGATGACACAAAACTGATAACAAAGGTTATCA TTCGTGAGCTTCAATCAATACTAAAGGAGCTTGTTTTGGATAAGAATGGAAGACGTCCCTTACTCCAATTACTACATCCT AATTGTTCACGCTATTTCAGTCCTGAGGATCTTGCTTCTCTGAATTCTTCTATACCTTCTCTGTCTCTCAAGGATCAGTC AGAAACAAGCTCTCAGACAGAAACTTCAAAGGCTTCACTTGATGACAATGAATCCAACGAAGACAAAGAAGTGACAGTGG ATGAAGTTAATAAAGATAAAACATCTGTGGATGATTCTGACCTAGCAGAGAGTGGGAAAAAAGACCCATTAGTTAGAAGG CAAGAGCTTTTGATCAATAGTGGACTTGCAGAGAGTCTTCTTGATGTATGTACTGAGAGTGTGGGAGAACTGATACGGTC AAATTTTGGCAAAGAGGTCTTATATGAGGTTGCAACAGGGGGTTCCGGTGGCATACTACACCCAACTTTGGACGATAAGA TTAATTCTCTTCACAAAGCAATAGCATCTCTTGCAGCATTGCCAAAATCAGAAGATTCAGAAGAGGAGCATGTCCTTGAA AATTTCCATTCAAATCGGACCATTAGAAAACTAATTTTGGATTGCCCCAGCTTTGCTTCCACATTATGGGAGGAAGCTTT AAAAGGGAAATGTGAGTCATGGGCGCATGGTCACAGCTGTAAGGTTATTTCTGCATTTTTGGAATCACCAGATTCTGAGG TACAGAAACTTGCAAAAAAAGAGCTGCAGCCATTAATTGATAATGGAATTCTGAAGAACCTGAAACCCACGGAACAAGCA ACCCAATAA
Protein sequence (LotjaGi4g1v0337600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKNQHDGTLKKRKRNTTEPPHKSPSKSKAPTKFAASKKHKPNSAGKEKNEKPTVPVTGRERRIQSKELAEARKKKRKR HYTLEQELARLWEKMRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLA YNAYSVHLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLFKDLVSSKE SRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIVDHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIG VLCVKYGSAKERKKIIKGLKEHIGKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHP NCSRYFSPEDLASLNSSIPSLSLKDQSETSSQTETSKASLDDNESNEDKEVTVDEVNKDKTSVDDSDLAESGKKDPLVRR QELLINSGLAESLLDVCTESVGELIRSNFGKEVLYEVATGGSGGILHPTLDDKINSLHKAIASLAALPKSEDSEEEHVLE NFHSNRTIRKLILDCPSFASTLWEEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLIDNGILKNLKPTEQA TQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 635 | 635 | 1.9E-235 | ||
| MobiDBLite | 1 | 68 | 68 | - | – | |
| MobiDBLite | 42 | 68 | 27 | - | – | |
| ProSiteProfiles | 87 | 439 | 353 | 21.465 | ||
| SUPERFAMILY | 96 | 408 | 313 | 9.21E-62 | ||
| ProSiteProfiles | 115 | 150 | 36 | 7.451 | ||
| SMART | 115 | 150 | 36 | 0.0021 | ||
| SMART | 151 | 186 | 36 | 1.7 | ||
| ProSiteProfiles | 151 | 186 | 36 | 8.291 | ||
| SMART | 187 | 222 | 36 | 0.075 | ||
| ProSiteProfiles | 187 | 222 | 36 | 8.547 | ||
| ProSiteProfiles | 301 | 337 | 37 | 4.721 | ||
| SMART | 302 | 337 | 36 | 64.0 | ||
| SMART | 338 | 375 | 38 | 21.0 | ||
| ProSiteProfiles | 338 | 375 | 38 | 6.704 | ||
| ProSiteProfiles | 376 | 413 | 38 | 4.768 | ||
| MobiDBLite | 422 | 472 | 51 | - | – | |
| MobiDBLite | 422 | 439 | 18 | - | – | |
| MobiDBLite | 440 | 472 | 33 | - | – | |
| Pfam | 470 | 572 | 103 | 4.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0337600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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