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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033133
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.540s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0047679.1
n.a. PREDICTED: pumilio homolog 1-like isoform X2 [Cicer arietinum] gi|502096967|ref|XP_004490876.1| chr0 15970726 15979220 +
2 domain predictions
1 GO term
Lj0g3v0219909.1
n.a. PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1| chr0 112469828 112477344 -
2 domain predictions
1 GO term
Lj0g3v0219909.3
n.a. PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1| chr0 112469828 112477344 -
2 domain predictions
1 GO term
Lj0g3v0249229.1
n.a. PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1| chr0 129168590 129171573 +
2 domain predictions
1 GO term
Lj0g3v0254439.1
n.a. Pumilio-like protein [Medicago truncatula] gi|357454231|ref|XP_003597396.1| chr0 132104364 132107457 +
2 domain predictions
1 GO term
Lj0g3v0291179.1
n.a. PREDICTED: pumilio homolog 11-like [Cicer arietinum] gi|502117968|ref|XP_004496035.1| chr0 151160954 151162629 -
2 domain predictions
1 GO term
Lj1g3v1708950.1
n.a. PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1| chr1 20157837 20160820 +
2 domain predictions
1 GO term
Lj4g3v2122820.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 6, chloroplastic-like [Glycine max] gi|356550736|ref|XP_003543740.1| chr4 29221819 29227601 -
2 domain predictions
1 GO term
Lj4g3v2289240.1
n.a. PREDICTED: pumilio homolog 24-like isoform 1 [Glycine max] gi|356564394|ref|XP_003550439.1| chr4 31847318 31851944 +
2 domain predictions
1 GO term
Lj5g3v1806980.1
n.a. PREDICTED: pumilio homolog 4-like isoform X4 [Cicer arietinum] gi|502118396|ref|XP_004496246.1| chr5 25743558 25752342 +
2 domain predictions
1 GO term
Lj5g3v1806980.2
n.a. PREDICTED: pumilio homolog 4-like isoform X5 [Cicer arietinum] gi|502118398|ref|XP_004496247.1| chr5 25743558 25752342 +
2 domain predictions
1 GO term
Lj6g3v1356520.1
n.a. PREDICTED: pumilio homolog 5-like [Cicer arietinum] gi|502085772|ref|XP_004488002.1| chr6 16100044 16107460 +
2 domain predictions
1 GO term
Lj6g3v2218350.1
n.a. PREDICTED: pumilio homolog 2-like [Glycine max] gi|356557551|ref|XP_003547079.1| chr6 25765335 25770732 +
2 domain predictions
1 GO term
LotjaGi1g1v0088100.1
n.a. Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100 LjG1.1_chr1 12777645 12786914 -
2 domain predictions
1 GO term
LotjaGi1g1v0088100.2
n.a. Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100 LjG1.1_chr1 12777935 12786748 -
2 domain predictions
1 GO term
LotjaGi1g1v0146700.1
n.a. Pumilio; TAIR: AT1G22240.1 pumilio 8; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|G7KAF0|G7KAF0_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0146700 LjG1.1_chr1 24946372 24952330 -
2 domain predictions
1 GO term
LotjaGi1g1v0359500.1
n.a. Pumilio-like protein; TAIR: AT5G56510.1 pumilio 12; Swiss-Prot: sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12; TrEMBL-Plants: tr|K7KT25|K7KT25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0359500 LjG1.1_chr1 83428309 83432016 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.1
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57699767 57707667 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.2
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57700365 57705909 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.3
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57700365 57705909 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.4
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57700365 57705980 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.5
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57700365 57706118 +
2 domain predictions
1 GO term
LotjaGi3g1v0285500.6
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500 LjG1.1_chr3 57702020 57705980 +
2 domain predictions
1 GO term
LotjaGi3g1v0285800.1
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800 LjG1.1_chr3 57770173 57779370 -
2 domain predictions
1 GO term
LotjaGi3g1v0285800.2
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800 LjG1.1_chr3 57773004 57778827 -
2 domain predictions
1 GO term
LotjaGi3g1v0285800.3
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800 LjG1.1_chr3 57773216 57777183 -
2 domain predictions
1 GO term
LotjaGi3g1v0285800.4
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285800 LjG1.1_chr3 57773216 57778827 -
2 domain predictions
1 GO term
LotjaGi3g1v0285800.5
n.a. Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800 LjG1.1_chr3 57773216 57778827 -
2 domain predictions
1 GO term
LotjaGi4g1v0304100.1
n.a. Pumilio, putative; TAIR: AT4G25880.4 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100 LjG1.1_chr4 67946292 67959885 -
2 domain predictions
1 GO term
LotjaGi4g1v0304100.2
n.a. Pumilio, putative; TAIR: AT4G25880.1 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100 LjG1.1_chr4 67946292 67959885 -
2 domain predictions
1 GO term
LotjaGi4g1v0304100.3
n.a. Pumilio, putative; TAIR: AT4G25880.1 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100 LjG1.1_chr4 67946369 67959873 -
2 domain predictions
1 GO term
LotjaGi4g1v0337600.1
n.a. Pumilio-like protein; TAIR: AT3G16810.1 pumilio 24; Swiss-Prot: sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24; TrEMBL-Plants: tr|I1MRL9|I1MRL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337600 LjG1.1_chr4 71808554 71815604 +
2 domain predictions
1 GO term
LotjaGi4g1v0337600.2
n.a. Pumilio-like protein; TAIR: AT3G16810.1 pumilio 24; Swiss-Prot: sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24; TrEMBL-Plants: tr|I1MRL9|I1MRL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337600 LjG1.1_chr4 71808857 71813609 +
2 domain predictions
1 GO term
LotjaGi4g1v0337600.3
n.a. Pumilio-like protein; TAIR: AT3G16810.1 pumilio 24; Swiss-Prot: sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24; TrEMBL-Plants: tr|I1MRL9|I1MRL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337600 LjG1.1_chr4 71808916 71813609 +
2 domain predictions
1 GO term
LotjaGi5g1v0271700.1
n.a. Pumilio, putative; TAIR: AT3G10360.1 pumilio 4; Swiss-Prot: sp|Q9SS47|PUM4_ARATH Pumilio homolog 4; TrEMBL-Plants: tr|I1NHH7|I1NHH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271700 LjG1.1_chr5 58532883 58542696 +
2 domain predictions
1 GO term
LotjaGi5g1v0271700.2
n.a. Pumilio, putative; TAIR: AT3G10360.1 pumilio 4; Swiss-Prot: sp|Q9SS47|PUM4_ARATH Pumilio homolog 4; TrEMBL-Plants: tr|I1NHH7|I1NHH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271700 LjG1.1_chr5 58535619 58542647 +
2 domain predictions
1 GO term
LotjaGi6g1v0217800_LC.1
n.a. Pumilio-like protein; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c; TrEMBL-Plants: tr|V7BDT2|V7BDT2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0217800_LC LjG1.1_chr6 52004814 52006935 -
2 domain predictions
1 GO term
LotjaGi6g1v0239800.1
n.a. Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|I1L1B8|I1L1B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0239800 LjG1.1_chr6 55085598 55094945 +
2 domain predictions
1 GO term
LotjaGi6g1v0239800.2
n.a. Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|A0A0B2RRT4|A0A0B2RRT4_GLYSO Pumilio like 5; Found in the gene: LotjaGi6g1v0239800 LjG1.1_chr6 55086687 55092472 +
2 domain predictions
1 GO term
LotjaGi6g1v0353100.1
n.a. Pumilio; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|A0A0B2RFZ1|A0A0B2RFZ1_GLYSO Putative pumilio like 7, chloroplastic; Found in the gene: LotjaGi6g1v0353100 LjG1.1_chr6 66549043 66554501 +
2 domain predictions
1 GO term