Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0337600 |
| Transcript ID | LotjaGi4g1v0337600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT3G16810.1 pumilio 24; Swiss-Prot: sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24; TrEMBL-Plants: tr|I1MRL9|I1MRL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71808857..71813609) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATATCTTGTTTTCATTTGCGGGTTTTCGCAATCAGAGATTGCTTGTTTTGATATTTTTTTTGTTTTGTTTCAGGAA CTTGCAGAGGCTAGAAAGAAGAAGAGAAAGCGGCATTACACTCTTGAACAAGTAAGTATTATCCTCATATTCTACTCTAT AATCTATACGTGTATATATTGTTCTTTTATGAGATGAATTGAAGCCTTGACAGTTGACATTATAGCATAGTTAATTTCAC TATGTGTTGTTTTCTTTCAATTCTGGCTATAATTGAATGGAATATACTTAATTCTGATTAGGAACTTGCGCGTCTATGGG AAAAGATGAGACGTCACGAGATTGCTAAAGAGGATAGAGCTAAGTATGTTCCTATAGAAAACATATCAAGGACTGATAGT GATATTGTATGCTAAATGCTAAGCCTTTTTTTATCCTTGTATCTTATTTAGGTTGGTGACAGAAGCTTTGCAAAAGATGA AGGGGAAGATTCCTGAGATTGCGGGGTCTCATGTTTCTTCCCGTGTCCTTCAGGTATTTTTTTGAAGAATTTTCGGTTTT ACGTCGTTTTTAGACTTGCTTACAGTTTTAACCTTTTGCTTTCTTTTTGTTTTGATTATTGAAAGACATGTGTCAAGCAT TGTTCACAAGCTGAAAGAGATGCGGTGTTTGAGGAGCTTCAGCCACATTTTCTGAATCTAGCATATAATGCATATTCTGT TCACTTAGTAAAGAAGATGCTTGACAATGGTAATGGTCTACTTGAAGTGATAATGGATTTATTACTAATAAACACTGAGT AATGATGAGTTTTCTGACTCTAATTGGTCGTCCTCCGTTTTCAGCCTCCAAGAAGCAACTAGCTGGCTTTATCTCCAGTC TTCGTGGTCATGTTGCTCCTCTTCTTCGCCACATGGTTGGATCAGTTGGTATGTAACTTATGTTTTGGCAGTATATTGCA GTTGTTCATTGTTTACTTCAGTTTTTCGGAGGTTTTTTAACGGTTTACTGGGGGGAAGCTTTTCACTCTTTTTGGATGTA TAAAGTAGCATATATATTGACATGAAGTTTAATTTGAAGATGGCTAGTTTAGGATTTGAGGGAGACTAACAATGAAGAAA ACGGGGGGAAATCCATAAATCAGTTTTCTTATCACCACATTTTTTTTCAATTTTCATGCACTGATACCAATTGTTAATGA TTCAAACATTTCAGTTGTGGAGCATGCTTACGAGCTGGCAAATGCTGCACAAAAACAACAGCTGCTTTCGGAATTGTACT CCACTGAGCTTCAGCTGTTTAAGGACCTAGTCTCATCGAAGGAGAGCAGGTAAAAATTCAGCAGTTAGGATTTACATTAT AGCATTTGAAATAATGCTGGATCAACATCTCTTCTATGTGTCCCATTTTAAAAATAATTCAGAGATAATTACTGGAATTT AGAATATATGGTATAATTATTCTTGCGCAGTGTGTGTGTAATGCAAAAGGACTTATCCAACGTCTGCAAACTTACATAGA AAGGAATGATGGAGTCTCCATTTCCAACTTCTTTTATTTTATTGAGACCTGCTTGTATTTGAATGCCTTTTGGGGAGTTT TGGTAGGGGCCATGGGTTATAGAACTGGGAGGCAATATCTGCAACTTATGCCATAGGTAGTAAATTAGTTTTTGCTTTAC TGGAGAGTTTTATGTTGTGCACGTATTAATAATTCCAAGGCTTCTATAGGTGAGTAAACTGTCAGACTATTGCTATTAAC AGTCTATAATTTTCTAACAAAGTTTCCCTTAAAAAAAGTGAATACACATTACTTTGATTTAAATTTGTTTGGCATTTTTG TTTTACGAGGCTGGCAATCCATAAAGCTGGCTCAAATATTTTTTTTGTTGCAATAATTTCTCCTCTTCTTGGATTGATAT GATCTCTTGATTTAACTGACCTTTACTAGATGGCATTTATTCGTTGCTTTACCTCTTGCTGGAGCTTTTCCCCTTAGCTT TTAATTGCATGTCAGGTTGCTAGATATAATGTCCAAGTTGGATCTACAAAAAGGTTCAGTTTTGCGCCATATGGCATCAG TGATTCAGCCAATCTTAGAGAAAGGGATTGTTGACCACTCTATCTTACACAGACTCTTGCTGGAATACTTTACCATTGCT GGCAAGGTATTTATCTCCAATTCCCCAGCCCATAATTCTGCGTACTTCTTGTCACAGCCAACATGTTTAACCATGGCAAT AGCTTCTTTTATCTAAGTTAAGTTTTTTTTGAAGACCTCTGTCGCAGAGATAATCCAACAGCTATCAAGTCCTCTCCTTG TTCGAATGATTGGCACAAAGGATGGAGCCAAAATTGGAGTTCTGTGTGTAAAATATGGGAGTGCCAAGGTTTCTGTAGCT ACTTTTTTTCTCATCAATAGAAATGTGTAGAGTACTCATGATGATTGAATCTGCTGAATCACTCATCTTCTACTTCGCTT TCCCCTTTTAGGAAAGAAAGAAGATTATCAAAGGATTGAAAGAACACATAGGCAAAACAGCTTACCATCAATATGGGTGT ATGGTAAGCAATTTGACTCTCCAGCTATGTTTTGTTGCCGAGCCTAGCTATGGTATTAGGTATAGTTATGCTTTGCATCT ATGGTAAGTCTGAAGTTTTCATGCTGAAGCTTCCTCCTTCTAAATAAGAAAGATTTGGTCTTCTGGAACTAGTTCAAAAT GGACAAACTTAAAATTAGTGAATTTGGAAATAGCTGCAAATGAAATTCAGACATAGAGGCTTACATGGTTGTTATGAGTT GGCATGCCTGCTTAACATTTATATGCCTGCGCTGTTCCTTGAGTCGTCCATGGCAAATCTATTGACTCAATAGTTTCTTT CCATAAGTAGTTGCTACTGTACTCTTACTCTACTTGTTTTGGACTAATGTGTTGAGTTTCCAAAGAGGCAATATACCACC CCTGGAAATCAGCGAAAACAAATCATTATGTCTGCAACTTCTAATTCAGATTAATATCAATACTTAATTTGTTTAATTTA AATTTCAGGTGCTGGTTTGCATCCTTTCTGTTGTTGATGACACAAAACTGATAACAAAGGTGTGTGTGGCTTTGCTCTGA TTCTGATTTTCTCGTAAATAGTCATTTTTTCTATATAGTGAAATTTTTGTTTCATATTTAGCTTCATTCTCATTACAGGT TATCATTCGTGAGCTTCAATCAATACTAAAGGAGCTTGTTTTGGATAAGGTTTCTTTCTTTACACTTCACATATGATGTT TATAAGCATTATGAAATAGATGCTAGTATAGTTTTTATCAATCAATAAGGACATCCTTAAAATCATTATATGCATATGAG CAGTTAGCATTTTTTGCTGTTTTTTTTTTCAATCCTCCTGCCCTAACTTTGTCTATTTTAATTTGGTGCGTCGGAAAACT CCCCAACTTCGTCTATAAAACAACATATAAATATTGTTTATTGCATATTCTCATGATACTGGTTATGATGTTTTACAGAA TGGAAGACGTCCCTTACTCCAATTACTACATCCTAATTGTTCACGCTATTTCAGTCCTGAGGATCTTGCTTCTCTGAATT CTTCTATACCTTCTCTGTCTCTCAAGGTTATTTTTTAACCTATCCTTTCTACTTTGTTTTTGGTACTTCCAAGCAGCTAT ATTAGTCACACTTTTTGTTTTCGTTTCTGTCAGGATCAGTCAGAAACAAGCTCTCAGACAGAAACTTCAAAGGCTTCACT TGATGACAATGAATCCAACGAAGACAAAGAAGTGACAGTGGATGAAGTTAATAAAGATAAAACATCTGTGGATGATTCTG ACCTAGCAGAGAGTGGGAAAAAAGACCCATTAGTTAGAAGGCAAGAGCTTTTGATCAATAGTGGACTTGCAGAGGTATGT TGCTTTACTTTGCCTTTCCTTAACTTTTTTTGTTCAGATTCAATTGTTTTTATAAAACGGGTTATTTACATTTTTTATAT TGTTGATACAATTATATTGATTTTGGTCCCGCAAAGCTAGGGCCAGATCGATTATTTGAATTGTGAGATTGTGTTGAAAA TGCTGTTTGATTGTAATTTTCTTGCAGAGTCTTCTTGATGTATGTACTGAGAGTGTGGGAGAACTGATACGGTCAAATTT TGGCAAAGAGGTCTTATATGAGGTAATCAAAATGATGTTGACATTAGAATTTCACAATTTCTAATAATTTGGTTCTGAGC ATTACCTTTTGGGTGAATTCAACTGCGCATTCAGGTTGCAACAGGGGGTTCCGGTGGCATACTACACCCAACTTTGGACG ATAAGATTAATTCTCTTCACAAAGCAATAGCATCTCTTGCAGCATTGCCAAAATCAGAAGATTCAGAAGAGGAGCATGTC CTTGAAAATTTCCATTCAAATCGGACCATTAGAAAACTAATTTTGGATTGCCCCAGCTTTGCTTCCACATTATGGGAGGA AGCTTTAAAAGGGAAATGTGAGTCATGGGCGCATGGTCACAGGTAGGCTTCATTTGCTCTTGTATTATTCTTTAATGAGA TAAGGGTACTAAGGTCTATGATTTCTTATGTTTTTTTTCCTCTTGATACTCTGATTGCAGCTGTAAGGTTATTTCTGCAT TTTTGGAATCACCAGATTCTGAGGTACAGAAACTTGCAAAAAAAGAGCTGCAGCCATTAATTGATAATGGAATTCTGAAG AACCTGAAACCCACGGAACAAGCAACCCAATAA
CDS sequence (LotjaGi4g1v0337600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACGTCACGAGATTGCTAAAGAGGATAGAGCTAAGTTGGTGACAGAAGCTTTGCAAAAGATGAAGGGGAAGATTCC TGAGATTGCGGGGTCTCATGTTTCTTCCCGTGTCCTTCAGACATGTGTCAAGCATTGTTCACAAGCTGAAAGAGATGCGG TGTTTGAGGAGCTTCAGCCACATTTTCTGAATCTAGCATATAATGCATATTCTGTTCACTTAGTAAAGAAGATGCTTGAC AATGCCTCCAAGAAGCAACTAGCTGGCTTTATCTCCAGTCTTCGTGGTCATGTTGCTCCTCTTCTTCGCCACATGGTTGG ATCAGTTGTTGTGGAGCATGCTTACGAGCTGGCAAATGCTGCACAAAAACAACAGCTGCTTTCGGAATTGTACTCCACTG AGCTTCAGCTGTTTAAGGACCTAGTCTCATCGAAGGAGAGCAGGTTGCTAGATATAATGTCCAAGTTGGATCTACAAAAA GGTTCAGTTTTGCGCCATATGGCATCAGTGATTCAGCCAATCTTAGAGAAAGGGATTGTTGACCACTCTATCTTACACAG ACTCTTGCTGGAATACTTTACCATTGCTGGCAAGACCTCTGTCGCAGAGATAATCCAACAGCTATCAAGTCCTCTCCTTG TTCGAATGATTGGCACAAAGGATGGAGCCAAAATTGGAGTTCTGTGTGTAAAATATGGGAGTGCCAAGGAAAGAAAGAAG ATTATCAAAGGATTGAAAGAACACATAGGCAAAACAGCTTACCATCAATATGGGTGTATGGTGCTGGTTTGCATCCTTTC TGTTGTTGATGACACAAAACTGATAACAAAGGTTATCATTCGTGAGCTTCAATCAATACTAAAGGAGCTTGTTTTGGATA AGAATGGAAGACGTCCCTTACTCCAATTACTACATCCTAATTGTTCACGCTATTTCAGTCCTGAGGATCTTGCTTCTCTG AATTCTTCTATACCTTCTCTGTCTCTCAAGGATCAGTCAGAAACAAGCTCTCAGACAGAAACTTCAAAGGCTTCACTTGA TGACAATGAATCCAACGAAGACAAAGAAGTGACAGTGGATGAAGTTAATAAAGATAAAACATCTGTGGATGATTCTGACC TAGCAGAGAGTGGGAAAAAAGACCCATTAGTTAGAAGGCAAGAGCTTTTGATCAATAGTGGACTTGCAGAGAGTCTTCTT GATGTATGTACTGAGAGTGTGGGAGAACTGATACGGTCAAATTTTGGCAAAGAGGTCTTATATGAGGTTGCAACAGGGGG TTCCGGTGGCATACTACACCCAACTTTGGACGATAAGATTAATTCTCTTCACAAAGCAATAGCATCTCTTGCAGCATTGC CAAAATCAGAAGATTCAGAAGAGGAGCATGTCCTTGAAAATTTCCATTCAAATCGGACCATTAGAAAACTAATTTTGGAT TGCCCCAGCTTTGCTTCCACATTATGGGAGGAAGCTTTAAAAGGGAAATGTGAGTCATGGGCGCATGGTCACAGCTGTAA GGTTATTTCTGCATTTTTGGAATCACCAGATTCTGAGGTACAGAAACTTGCAAAAAAAGAGCTGCAGCCATTAATTGATA ATGGAATTCTGAAGAACCTGAAACCCACGGAACAAGCAACCCAATAA
Protein sequence (LotjaGi4g1v0337600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKMLD NASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLFKDLVSSKESRLLDIMSKLDLQK GSVLRHMASVIQPILEKGIVDHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKK IIKGLKEHIGKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHPNCSRYFSPEDLASL NSSIPSLSLKDQSETSSQTETSKASLDDNESNEDKEVTVDEVNKDKTSVDDSDLAESGKKDPLVRRQELLINSGLAESLL DVCTESVGELIRSNFGKEVLYEVATGGSGGILHPTLDDKINSLHKAIASLAALPKSEDSEEEHVLENFHSNRTIRKLILD CPSFASTLWEEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLIDNGILKNLKPTEQATQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 541 | 541 | 3.7E-216 | ||
| ProSiteProfiles | 1 | 345 | 345 | 18.894 | ||
| SUPERFAMILY | 2 | 314 | 313 | 6.04E-62 | ||
| ProSiteProfiles | 21 | 56 | 36 | 7.451 | ||
| SMART | 21 | 56 | 36 | 0.0021 | ||
| ProSiteProfiles | 57 | 92 | 36 | 8.291 | ||
| SMART | 57 | 92 | 36 | 1.7 | ||
| ProSiteProfiles | 93 | 128 | 36 | 8.547 | ||
| SMART | 93 | 128 | 36 | 0.075 | ||
| ProSiteProfiles | 207 | 243 | 37 | 4.721 | ||
| SMART | 208 | 243 | 36 | 64.0 | ||
| SMART | 244 | 281 | 38 | 21.0 | ||
| ProSiteProfiles | 244 | 281 | 38 | 6.704 | ||
| ProSiteProfiles | 282 | 319 | 38 | 4.768 | ||
| MobiDBLite | 328 | 378 | 51 | - | – | |
| MobiDBLite | 328 | 345 | 18 | - | – | |
| MobiDBLite | 346 | 378 | 33 | - | – | |
| Pfam | 376 | 478 | 103 | 3.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0337600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…