Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0338200 |
Transcript ID | LotjaGi4g1v0338200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DAG protein, chloroplastic; TAIR: AT3G06790.2 plastid developmental protein DAG; Swiss-Prot: sp|Q84JZ6|MORF3_ARATH Multiple organellar RNA editing factor 3, mitochondrial; TrEMBL-Plants: tr|I3T5W5|I3T5W5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0338200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71864057..71866057) extracted from Lotus japonicus Gifu genome v1.2.
CCTAATCTGTCTACAAGTTTTTGCCTTCAAGAAGCAGAACCCCTTCACAGTTGCACACTGCACACACTGTGATCGCAAAT GGCGTACGTGAACGCCCGGCGCACCTTAGCATCCACCCTTTCACGAGCTCTTTCTTCTTCTCCTTCTTCCTTTTCCACAC CATCTCGCTGTCGCTGCATCTTCGCTCTTGCGGCCAAACAAACCCTCCCCGTCCCCGACACCGTGAAATTCTCGGTTCGG ACCAAATCATCGGGTTCGGGTTACTCTCCGTTGAACGACCCATCTCCGAACTGGAGCAACCGTCCTCCGAAGGAGACGAT TCTCCTCGATGGCTGTGATTACGAGCACTGGCTCATTGTCATGGAGTTCCCTGAGAACCCTAAACCCTCTGAACAGGAAA TGGTCAATGCATATGTCAAAACCCTAACTCAAATCGTTGGAAGGTTTCAATTCTTCACTCCTATTCACTTGTTACCACAC TTCTATTCTCTAATTTATGCTATAATGGCTTTTTTCATTTTGCAGTGAGGAGGAAGCGATGAAGAAGATATACTCTGTTT CAACACATACATATACAGGTTTTGGTGCTCTCATTTCTGAAGAGCTTTCTTATAAAGTCAAAGGTGATTGCTTCTTACTT CAGTGGTTTCTCTTAGATTCTTCATCTTGCTTTGAATTTGTACTTTGTAGTTGCTTCACCAAATTTGTCTATTTGATTTG TTACTCAGGGTTTTATTGTGAATGCTGTTGTTAATTGTTATCATGCTACTCTATATTTGATAGGAAATCTCATCTTATAT TGATAGTGATTGAGGTTAATTTTATGTACTGTTTTTGAGTTTTTCTTTTTTCATATGATGAAATATGTAACTTTTAGAAT CTAAATGTGAATTGACAAAGCCTGTTTATAAGCAATGCGTGCGGATATTGGAATTTAGTCCATATACTTGACTGTTGTGG CGATCTTTTTCTCATGTTAATAGAGTTGCCTGGAGTTCTGTGGGTGCTGCCAGATTCATATCTTGATGTTCCCAACAAAG ATTATGGAGGTGAGTGGAGGTGTTTGAATTAAGTTAGAGCTTAGCTATTTGTTGGGTCGTTAGAATTATTTCATTTTTGT TGGTTGTCTTGATCGCTTTTGGGGAATTTCAGGTGATTTATTTGTTGATGGGAAAGTAATCCCCAGGCCGCAGTATAGAT ATGCTGAAAGGCAACCTACTAAGACTAGACCTCGACCTAGGCATGACAGGAGACGGGAAACAATGCAGGTTGAAAGGACA GACCCCAATCAAAGACAGAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCAGCTCCAATGAATAGCCAAAGACA GAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCAGGTCCAATGAATAACCAAAGACAGAACTGGAACCAAGGCC AGGGAGGACCTATGGATCAATCAGGTCCAATGAATAACCAAAGACAGAACTGGAACCAAGGCCAGGGAGGACCTATGGAT CAATCTGCTCCAATGAATAGCCAAAGACAGAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCTGCTCCAATGAA TAGCCAAAACTCTGCTTCGGACGGGGAGAACTAAAAAATGTCTAAGAGGAACTCTGCTTGAAAAATTATGGCATATAGAC ATGGAGTTCAGCTTTTGTAATGGAGAATTTTGATTTGATGTTCTAGGTCATATTTTACATGCTTTTGCGTGGAAAACGAT TGTGCCTGCACTCGAAGTACTTTGATAATTATATTTAGCATCATTATGAAGTTGTGAATGCCATGCTGATTGCTTCAAGT ATGAATTTAACCTTTACCATTTATGTTTTGATATGCAGTTCATATTGCTTATTGTTAAAATCGATAGACTTGAAACAATT GTGGTTTTGTCCAAATGCAATTGTTTTTTTTTTTCATCTGAACCTAGCCTCAATGCCCTGCAATGTTTCCTAATATCTTA G
CDS sequence (LotjaGi4g1v0338200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACGTGAACGCCCGGCGCACCTTAGCATCCACCCTTTCACGAGCTCTTTCTTCTTCTCCTTCTTCCTTTTCCAC ACCATCTCGCTGTCGCTGCATCTTCGCTCTTGCGGCCAAACAAACCCTCCCCGTCCCCGACACCGTGAAATTCTCGGTTC GGACCAAATCATCGGGTTCGGGTTACTCTCCGTTGAACGACCCATCTCCGAACTGGAGCAACCGTCCTCCGAAGGAGACG ATTCTCCTCGATGGCTGTGATTACGAGCACTGGCTCATTGTCATGGAGTTCCCTGAGAACCCTAAACCCTCTGAACAGGA AATGGTCAATGCATATGTCAAAACCCTAACTCAAATCGTTGGAAGTGAGGAGGAAGCGATGAAGAAGATATACTCTGTTT CAACACATACATATACAGGTTTTGGTGCTCTCATTTCTGAAGAGCTTTCTTATAAAGTCAAAGAGTTGCCTGGAGTTCTG TGGGTGCTGCCAGATTCATATCTTGATGTTCCCAACAAAGATTATGGAGGTGATTTATTTGTTGATGGGAAAGTAATCCC CAGGCCGCAGTATAGATATGCTGAAAGGCAACCTACTAAGACTAGACCTCGACCTAGGCATGACAGGAGACGGGAAACAA TGCAGGTTGAAAGGACAGACCCCAATCAAAGACAGAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCAGCTCCA ATGAATAGCCAAAGACAGAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCAGGTCCAATGAATAACCAAAGACA GAACTGGAACCAAGGCCAGGGAGGACCTATGGATCAATCTGCTCCAATGAATAGCCAAAGACAGAACTGGAACCAAGGCC AGGGAGGACCTATGGATCAATCTGCTCCAATGAATAGCCAAAACTCTGCTTCGGACGGGGAGAACTAA
Protein sequence (LotjaGi4g1v0338200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYVNARRTLASTLSRALSSSPSSFSTPSRCRCIFALAAKQTLPVPDTVKFSVRTKSSGSGYSPLNDPSPNWSNRPPKET ILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEELSYKVKELPGVL WVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRYAERQPTKTRPRPRHDRRRETMQVERTDPNQRQNWNQGQGGPMDQSAP MNSQRQNWNQGQGGPMDQSGPMNNQRQNWNQGQGGPMDQSAPMNSQRQNWNQGQGGPMDQSAPMNSQNSASDGEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 9 | 9 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
PANTHER | 1 | 250 | 250 | 2.4E-108 | – | |
SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
PANTHER | 1 | 250 | 250 | 2.4E-108 | ||
Phobius | 10 | 18 | 9 | - | – | |
Phobius | 19 | 26 | 8 | - | – | |
Phobius | 27 | 315 | 289 | - | – | |
MobiDBLite | 55 | 76 | 22 | - | – | |
MobiDBLite | 190 | 315 | 126 | - | – | |
MobiDBLite | 195 | 218 | 24 | - | – | |
MobiDBLite | 219 | 315 | 97 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cytidine to uridine editing | The conversion of a cytosine residue to uridine in an RNA molecule by deamination. |
Expression pattern of LotjaGi4g1v0338200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…