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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0339100 |
| Transcript ID | LotjaGi4g1v0339100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q6BU94|PRP46_DEBHA Pre-mRNA-splicing factor PRP46; TrEMBL-Plants: tr|V7CZ73|V7CZ73_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0339100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71916022..71920321) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATATAAATATATTATATTTATGACTCTTTAACACTTGTTGCTAATGCTGCACCAAGTCCAACATCGCACTGGTGCA CCTCAAAGCGATTCCCGTTTCGAAACTCCCCGAGAAAAAGCGATTCCAGATTCCGGGTATGTACTCTTGCTTTATCCCCT GTTTTTCTTCTTCAATTTTCGTTTTTCTGACGAGAAACTGAAGTTTTAGGCAGCAAAGTTTGAAACTTTATCAATATATG GCTCTGTAGAAATTGAATTAAATGTTGGGTTATGAATAGGGTTTTTGTTGTTGTAGTTTACACTTACAATGGTGAAACTG GAATTTTAGGGAGCAAAGTTTGAAACTTTTGAATTATATGGTTCTGTAGAAATTGAATAAAATGTTGGGTTATGAAAGGT TTTTACTTTTTAGTATTGTAGCTTACACTTACAATGGTGTTTCTGTCTGTTATTAGGCTCCAGAGTGATTGATGTGAAAA AAATGGGTTCCAATCTGGAATTAGTGCCAATTACGCCACTAAAACGCGACCCGGCATGGAAGCATGTTCAGATGTTTAAG AGTGGGGAGAAGGTGCAGATGAAGTGTATATATTGTCTCAAGATGTTCAAAGGTGGTGGGATTTATAGGATTAAGGAACA CCTTGCTTGTCAGAAAGGCAATGGATCCACTTGCAGCCATGTCCCTCATGATGTTAGGCTTCATATGCAGGAGGTCTTGG ATGGGGTTGGGGTGAAGTCGAGGAAGAAGCGGAAAATTGGGGATGAGATCGTGAATGTTAGTCCTCTGGCTGCTTCTGCT GCTGCTGTTGCTGCTAACAGAATTGTCAATCTGGTGGATGTGAATCAGGGGTTTGAGTCCATTGGAGTGCAGAGTCCAGT GGAACATAATGCAAGTCCGGCAGCGCATCCTGAGGAAGGAAATGGTAAAATTGTTGAAAGAAGGAAGAAAATAAGAGCCA GCAGGAATAAAGCACCAATTTATACGGACACTGAGGGTGCTGTTGCAATTGAGGAAACTGCATTGGTCCCAAAAAGGACA GACAATCACATTCATATGGCAATAGGTCGGTTTTTGTATGATATTGGTGCACCTTTTGATGCTGTGAACTCAATCTATTT CCAGCAAATGGTTGAAGCAATTGCTTCGGGGGGCTCAGGTGTTCAATGTCCCTCTCATCATGAACTTCGGGGTTGGATAT TGAAAAACTCTGTGGAAGAAGTGAAGAATGATATAGACAGGTGCAAGATGACATGGGGGAGGACTGGCTGTTCAATTTTA GCTGACCAATGGACTACAGAAACAGGTAGAATACTGATGAGTTTTTTGGCATATTGTCCTGGAGGCATAGTCTTTTTGAA ATCCTTGGATGCAACCGAGATTTCGACTTCTGAAGAATTTCTATATGAGTTGATTAAACAAGTAGTAGAAGAAATTGGAG TTGGGCAAGTGGTGCAAGTGATTATGTCAGGAGAAGAACAATATACTGCTGTTGGGAGCCGGCTAACTGACACTTTTCCT TCCCTTTATTGGAGCCCATGTGCTGCTCATTGCATTGATTTGATACTTCAAGATTTTGGAGATCTTGAGTGGATTAGTAT AGTGATTGAACAAGCTAAATCTGTAACAAGATTTGTCTACAATTATAGTGCAATTTTGAATATGGTTAGAAGGTATACAT CAGGGAATGATATTGTGGATCCCTCTTTCTCACGCTTTGCTACAAACTTTACCACATTGAAACGAATGGTTGATCTTAAA TACAATCTACAGGACATGGTCACTTCTCAGGAGTGGATGGATTGCCCATATTCAAAGAAAACAGCAGGCTTGGAAATGTT AGATTGCCTAAGCAATCAAACATTTTGGTCATCATGTGACATGATCGTTCGTCTAACAGCTCCTCTCTTGAGACTTCGGA GAATAGCTGCTAGTGAGATGAGGCCTGCAATGGGATACATTTATGCTGGAATGTACCGGGCAAAAGAAGCAATTAAGAAG GCACTTGTTAAGAGGGAGGAGTATATGGTGTACTGGAATATCATACATCATAGATGGGAAAAGTTGTGGCATCATCCCCT TCATGCTGCAGGCTTCTACCTTAATCCAAAGTTCTTCTATAGAAATCAAGGGGATATACCTAGTGAGATTCTCTCAGGGG TGTTTGACTGCATCGAGACGTTGGTACCTGATACAAGAGTCCAAGATAAAATTATGAAAGAGGTAAACTTATACCAGACT GCTGCTGGAGACCTAGGGAGAAAGATGGCAGTCAGAGCTAGAGACAATATGCTTCCTTGTAAGACACCAAGAACCCACTC CCTTAGACAATTTTCTTATACTTACTATCTTCCAAATTGTGTTTACCTTTCCTAGCTTAAAGCAACTTCATTGAAAAATT AGATTAGAATCTATATATACACATTATTTGTTTAAAATTTGGTATGAGAATGCAAATGTCAAAACTGATAAACTAAAAGG GGATGGAAATTGACTTGTCTAGCTTTAAGGGCTTTATGCTTTGTCATGATGACGGATGTCGTATGCGTTGAAATTTTCTG TATGAATGTATTGCACAAGTGACTTGTAAAATAACAGTGCTTTTAATTCTTTTGAAATCCTGCAAAGTCGGATATAATTT TTATTATGATCTATCTAGAGTAACACAATCAAGGGTAGAGTTCAACTTTACATTGGAGATTTAAAATTTGCACTGCAAAA GTCATCATCCATTTGAGTACTTCCTTTCTCTCATGATCCCTTCTTAAATTGCCCTTTTCACTTACATGTGTTTTTTTGTA GCTGAATGGTGGTCAACATATGGAGCAGGCATCCCTAACTTGTCACGTTTAGCAATTCGTATTCTCAACCAAACATCCAG TGTGATGTCCTGCAAGAGAAACCAGATTCCTTTTGAACAAATAATGAATACAAGGAATTATATAGAGCGCCAACATCTTA CGGATCTTGTCTTTGTTCATTCCAACTTACGATTAAGACAAATGTGAGCTTGAACTGTGTTTGTATTTGTATATTGATAG TTTGTTTTGACTGTTGAAGGGAACTTAAATTGTTTGCTTTGATTTTCTTTCAGTTATATGAGTAAAGAACAAGATTCTAG GGATCCCCTGTCATTTAATAGCATTGGTAATGTTGAAGACTGGATCAGGCCAAGGGATTTGGAGTTAGAAGAGTATGGTA ACTCGGACTGGATGGAACTGGATCCATCTTCTGTTAACACAATGCTTTTACAGCCTTTGAATGATGAAGCTGAAGAGTTG GGTGAAGGTAAATTGCAATGCATTATTTCAATGGATATGGAAATTGAAGATACAAAGTGTCATTAGTTAATATGTTTTGA TCTGTTTGTAGGGTTTGATGATCATGAAATTTTCAGTAGTCAGGAAGACGATGAAGATGAAAACACTGGAGATAAGTTGG CAATTAGCGAATGATCAAAAGAACCATGCCTTTACATGCCATGAAAAAGATCAATGGATGGAAGATGCACACACCCAACC AAAAACTCACTTGGGTAGTAAAAACAGTCAAATGCTTTCTCTGCAGAAAGAAGCTCTTGCCCTGGAAAGACATCTACATG TACTATTACCCTTGCCTTGATCTTGGGGCTCGTAGCTAGGAATAGCGGTGTTTGTTTTCAACCAAAAGGACAATGCACAA CACTGATCAAGTTTTCTTATGTGATGCAGTACATTTGTGCATATTTGTCCAGGGGTATTTAAAATTACATTTGGTTATTG CTGCATGTTTGATATTTTTACCTCTCAAGTGCTGAATGAATTATGAATCTGATGGAAAGCATTTCTCCTATGAATTAGGA TACATTATTATATGCTCTCTTGGGCTCCTGTAAACATTGACGTGTGGGACTCAATAAATTGTTTAATGCCTCCACAACCA ATATCTCATAAAAAGCGTGAACAAAAGTCATGGATAGAGAGAGACCCTAACTCTCCTGGAATCGCACCAAATAAGACATT TTTTCTTCTGCCATCTTGCACATTTAATCTTATTCTCCCATTTTTAGCCATTCTTTACACAAGAGATTCACAAATTTATT TAATTTGTTTGAGAAGAAGGTTTCCAGCCATAAAGAGTTCGCAGGAGGGGAATTTAGCATCTTCCAATGAGCTGTGTTTC CACCACAGGGGGTCACCGGTTCATCAACACCTTAAGAGCTATAGGAATTAAATAAGAGAAGTGAGAGATATGAGTGAAGT ATCAAAGTTTGAATGGAATAATATACTTTTATATGTGACAAATCAGTTCTTGAAAGTAAC
CDS sequence (LotjaGi4g1v0339100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCCAATCTGGAATTAGTGCCAATTACGCCACTAAAACGCGACCCGGCATGGAAGCATGTTCAGATGTTTAAGAG TGGGGAGAAGGTGCAGATGAAGTGTATATATTGTCTCAAGATGTTCAAAGGTGGTGGGATTTATAGGATTAAGGAACACC TTGCTTGTCAGAAAGGCAATGGATCCACTTGCAGCCATGTCCCTCATGATGTTAGGCTTCATATGCAGGAGGTCTTGGAT GGGGTTGGGGTGAAGTCGAGGAAGAAGCGGAAAATTGGGGATGAGATCGTGAATGTTAGTCCTCTGGCTGCTTCTGCTGC TGCTGTTGCTGCTAACAGAATTGTCAATCTGGTGGATGTGAATCAGGGGTTTGAGTCCATTGGAGTGCAGAGTCCAGTGG AACATAATGCAAGTCCGGCAGCGCATCCTGAGGAAGGAAATGGTAAAATTGTTGAAAGAAGGAAGAAAATAAGAGCCAGC AGGAATAAAGCACCAATTTATACGGACACTGAGGGTGCTGTTGCAATTGAGGAAACTGCATTGGTCCCAAAAAGGACAGA CAATCACATTCATATGGCAATAGGTCGGTTTTTGTATGATATTGGTGCACCTTTTGATGCTGTGAACTCAATCTATTTCC AGCAAATGGTTGAAGCAATTGCTTCGGGGGGCTCAGGTGTTCAATGTCCCTCTCATCATGAACTTCGGGGTTGGATATTG AAAAACTCTGTGGAAGAAGTGAAGAATGATATAGACAGGTGCAAGATGACATGGGGGAGGACTGGCTGTTCAATTTTAGC TGACCAATGGACTACAGAAACAGGTAGAATACTGATGAGTTTTTTGGCATATTGTCCTGGAGGCATAGTCTTTTTGAAAT CCTTGGATGCAACCGAGATTTCGACTTCTGAAGAATTTCTATATGAGTTGATTAAACAAGTAGTAGAAGAAATTGGAGTT GGGCAAGTGGTGCAAGTGATTATGTCAGGAGAAGAACAATATACTGCTGTTGGGAGCCGGCTAACTGACACTTTTCCTTC CCTTTATTGGAGCCCATGTGCTGCTCATTGCATTGATTTGATACTTCAAGATTTTGGAGATCTTGAGTGGATTAGTATAG TGATTGAACAAGCTAAATCTGTAACAAGATTTGTCTACAATTATAGTGCAATTTTGAATATGGTTAGAAGGTATACATCA GGGAATGATATTGTGGATCCCTCTTTCTCACGCTTTGCTACAAACTTTACCACATTGAAACGAATGGTTGATCTTAAATA CAATCTACAGGACATGGTCACTTCTCAGGAGTGGATGGATTGCCCATATTCAAAGAAAACAGCAGGCTTGGAAATGTTAG ATTGCCTAAGCAATCAAACATTTTGGTCATCATGTGACATGATCGTTCGTCTAACAGCTCCTCTCTTGAGACTTCGGAGA ATAGCTGCTAGTGAGATGAGGCCTGCAATGGGATACATTTATGCTGGAATGTACCGGGCAAAAGAAGCAATTAAGAAGGC ACTTGTTAAGAGGGAGGAGTATATGGTGTACTGGAATATCATACATCATAGATGGGAAAAGTTGTGGCATCATCCCCTTC ATGCTGCAGGCTTCTACCTTAATCCAAAGTTCTTCTATAGAAATCAAGGGGATATACCTAGTGAGATTCTCTCAGGGGTG TTTGACTGCATCGAGACGTTGGTACCTGATACAAGAGTCCAAGATAAAATTATGAAAGAGGTAAACTTATACCAGACTGC TGCTGGAGACCTAGGGAGAAAGATGGCAGTCAGAGCTAGAGACAATATGCTTCCTTCTGAATGGTGGTCAACATATGGAG CAGGCATCCCTAACTTGTCACGTTTAGCAATTCGTATTCTCAACCAAACATCCAGTGTGATGTCCTGCAAGAGAAACCAG ATTCCTTTTGAACAAATAATGAATACAAGGAATTATATAGAGCGCCAACATCTTACGGATCTTGTCTTTGTTCATTCCAA CTTACGATTAAGACAAATTTATATGAGTAAAGAACAAGATTCTAGGGATCCCCTGTCATTTAATAGCATTGGTAATGTTG AAGACTGGATCAGGCCAAGGGATTTGGAGTTAGAAGAGTATGGTAACTCGGACTGGATGGAACTGGATCCATCTTCTGTT AACACAATGCTTTTACAGCCTTTGAATGATGAAGCTGAAGAGTTGGGTGAAGGGTTTGATGATCATGAAATTTTCAGTAG TCAGGAAGACGATGAAGATGAAAACACTGGAGATAAGTTGGCAATTAGCGAATGA
Protein sequence (LotjaGi4g1v0339100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSNLELVPITPLKRDPAWKHVQMFKSGEKVQMKCIYCLKMFKGGGIYRIKEHLACQKGNGSTCSHVPHDVRLHMQEVLD GVGVKSRKKRKIGDEIVNVSPLAASAAAVAANRIVNLVDVNQGFESIGVQSPVEHNASPAAHPEEGNGKIVERRKKIRAS RNKAPIYTDTEGAVAIEETALVPKRTDNHIHMAIGRFLYDIGAPFDAVNSIYFQQMVEAIASGGSGVQCPSHHELRGWIL KNSVEEVKNDIDRCKMTWGRTGCSILADQWTTETGRILMSFLAYCPGGIVFLKSLDATEISTSEEFLYELIKQVVEEIGV GQVVQVIMSGEEQYTAVGSRLTDTFPSLYWSPCAAHCIDLILQDFGDLEWISIVIEQAKSVTRFVYNYSAILNMVRRYTS GNDIVDPSFSRFATNFTTLKRMVDLKYNLQDMVTSQEWMDCPYSKKTAGLEMLDCLSNQTFWSSCDMIVRLTAPLLRLRR IAASEMRPAMGYIYAGMYRAKEAIKKALVKREEYMVYWNIIHHRWEKLWHHPLHAAGFYLNPKFFYRNQGDIPSEILSGV FDCIETLVPDTRVQDKIMKEVNLYQTAAGDLGRKMAVRARDNMLPSEWWSTYGAGIPNLSRLAIRILNQTSSVMSCKRNQ IPFEQIMNTRNYIERQHLTDLVFVHSNLRLRQIYMSKEQDSRDPLSFNSIGNVEDWIRPRDLELEEYGNSDWMELDPSSV NTMLLQPLNDEAEELGEGFDDHEIFSSQEDDEDENTGDKLAISE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 746 | 739 | 4.2E-281 | – | |
| PANTHER | 8 | 746 | 739 | 4.2E-281 | – | |
| ProSiteProfiles | 13 | 71 | 59 | 9.396 | ||
| Pfam | 230 | 381 | 152 | 1.1E-54 | ||
| SUPERFAMILY | 263 | 669 | 407 | 2.5E-37 | ||
| Pfam | 596 | 668 | 73 | 1.6E-8 | ||
| MobiDBLite | 727 | 764 | 38 | - | – | |
| MobiDBLite | 733 | 757 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0339100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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