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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0339200 |
| Transcript ID | LotjaGi4g1v0339200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain; TAIR: AT4G15930.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm; TrEMBL-Plants: tr|I3SWD9|I3SWD9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0339200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71920783..71923876) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTGGTAAACCCTTCCCTACTTCAATTAAATGACAGTGAGTAAAAAGGTAAAAGTTAAAACAAAAACTAAACCAACCT TTTTAAAATCAAATGCAAGCACCTAATTCTTCCTCCATTTCAAACCTCAGTCACTCACTCACACAATGAGCAGCGACGAG GCCAGGAGGAACAGCGTCGTCGTTGGTGGCGGAGGAGGAGGAGGAGCACCACCACTTCTTACGGCGAGACCCAACTCCGA AGATCGAAAGCCAATGCTCTCCTCTTTATCCCCACCACCGCCGCCACAAACACCATCTGCTGCTCCCGCACCCAAGAAAG TCATCATCAAGAGTGCTGATATGCTCCCTGACATGCAGAAAGAGGCCGTTGATATCGCCGTCGCGGTTAGTATCCTCCAA CCCATTTCCACTCCTTCGTTCTCTTCTCTCCGATTCTCACTGTCACTGATTATTCCCTCTTCTTCTTCGAAATCAGGCAT TTGAGAGGCTCAATGTGGAGAAAGATGTTGCTGAGCATATCAAGAAGGAGTTCGATAAGAGGCATGGACCCACTTGGCAT TGCATAGTTGGTCGCAATTTCGGTACTCCCTTTTCTCCTCTATGAATTTTTCGTTTTCTTCTCTGCTCGGAACATGAACT AGATCTATGCTTAGCTCAGTACTTGTTTACTTCGAATTGTTGACTTGGTGTTGCAAAAATGGGTGTTTTTTTTTTTTGCA ACTCAGGACTAGTTTTGAAAACCTAGATTTTTTCTTGTTGTGTATGCTGTCTTGTTAATTACATGTTTTTTATTGAGATG ACAGTCATTTGGGGTTCCTCTTAAGCTGCAGTGTATGATTTTTTTGTCTGTTTGTCTGGGAAGTCTTGTCTTGAATTAAG TAGTTACAGGAGGAGAGAGTGGTTGAATTTGAATACACCATCTACTTCTTTTTGCTTACATTTTTTTTGTACTGAAATGA AGCTATGTTAGTTTTTGATATTTCATGTCATTGTTAGCTCCTCGGAATTGATAATTGTTCCCTTGGAAAATCAAAATTAA AGTTTATATGGGGAAGGTCTGTTGATGTTAGAGGATTCTGCTTGGTTGGTTTTCAGTATTCATAGAGGAGTAGAACATAA TGAATTAGGATGTGTTTAGGTAATGGATTTTATTGCGGCAATGTATTTGTTGAGAGGGGTTTAATTGATTTACTGTAAAA GGCACTACTTTGGCCCCGAGTGAATTTTAAAAACACCTGGTATTTTTTAACACAAAGTGAAGGGTTTCATATATATTATG TCATTCAAGGTGTGCTTTCAGTATTGTAGACCTAGAACAGGCATGTTTTGTTATCTGCTATATGGATAAAAATACATCTA AAGAGTAGGATTTGCACTCTTCATATATTCTTGAAGAATGATTTTGATTTTTGATTTTTATGTTTGTCTAATTCACTGTC TGCCCAGCTTAAGTTTGAAAAACTTCATTATCTGCTTAGGTGATTTCTACCCCCGACCATTCTGCACATATCTTAAACAT GCATTAACCGTACCAGTGACTTAAGGTTGACTTATTAGTTTGATTTGATCAATGATGGTTTTTTTCTTAATTTAGGAGTC TGATAATTTTATGAATATGAATAACCTGTCCATTAATCTCCAAAGTGGTGAAAGTAGTTGAGGCTCCCTGGCATTTTTCA AGCTGCAAACACTAATAATGATGGTCATATGTACTCAGATGGTTGTCTCTAGAGCGTTAACTTAATTATAAGGCTTCTCA TTTATATAAATGTTATCTTTTGATATCATCTGTGATAGGCCTCGAGGAATTTATTAGGAATTGTAGAACATCATGAAGTA TAGAATACAATATAAAAATATTAGATGGGTCTGATAGCGATGGAGAGACTACAAGGGTTAGCAACATAAAAACACTACTT TTCATATCATATAATCTTAGTTTTAGAGGTAATAATACATAATATAATAGAATTACCTTTCTTATTTTCTTGTTGGAGTT GGTTAACCTTTGGGCATTTGATAGTAATCATAGGTTGGCTATTCCCCGTCCCAAATTTTTACTGATTTATGTACATGTAG CATGAGTATGGAGCTCAGTTTTTGGCGGCTAGGAGGACACATGAAATATTTAATGATGCTCTGTTATTTTTATGATTTTA TCATTGGATTTTGTTATTTTATGGCATAGTTTATGAAGATGATCAATTCCAGATAACATGAACTTCATTGCCATTTTGTA TTGCACATTGAAACCTTAACAAGTCTAATATCATTTTGTGTTCAGAAGTACTATTAGTTTTTCAACAAAATTCTGACTGC TAAACCAAATGAAGATCTTGGTCCTGCTTACCTTTGGTGATATTCTTCTGTTTAGTGTTGTAAAGTTTAGAATGACAAAC ACGATTTATGACGTAAACGTGTTCATGGCCTTTTCATTGCTTTGCAGGTTCGTATGTGACTCATGAAACAAACCACTTTG TGTATTTCTATTTGGATCAGAAAGCGGTTTTACTTTTCAAGTCTGGCTAGCCATATTCTGATGGTGAATAAGAAAGCTGA AAGCTACAAGAATTGTCTTGTGATTATGCTGCTATATTGTCTCTTGTATGTATTGAATACTCAGGCACTCAAACTCTTTG TAGGACATTCTTGTTCTTGTATATCTAATTTTATGCGAACTGGTTCTTTAGTTTGGATATGAATCAAATTGCCGATCTTT CTCTTCCCTGTATGGCTTTATGCTCCATTCCATATGCTTGTTTTGGGATTTTTTTAATCTTCTTATATGAAGTTTGTCTT CGTTCCCCGTCTGTTATCTTTTCAAATATTTCAGGTTTTCTAGATCTTAAAGCTCTCTCTATATGCGGCAAAGGATCTAT GAACGAAAGTGCCTGATGTTAACAACTTTCTGGAAAAGTAATGTGCATGACTATGGCTTGGTTTAATCCTACTATTCTCT GCCTAAATTAGTAAATAGTGATGTCGTGTTTTTGGTGCTTGTTAGAGAAGTGGTATCCATGCTTATGGCCTGGTTTAATC CTACGATTCATTGAGTTGCTTGTGGCTGCTGAGTGGCCCACAAGATAAGGATTG
CDS sequence (LotjaGi4g1v0339200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGCGACGAGGCCAGGAGGAACAGCGTCGTCGTTGGTGGCGGAGGAGGAGGAGGAGCACCACCACTTCTTACGGC GAGACCCAACTCCGAAGATCGAAAGCCAATGCTCTCCTCTTTATCCCCACCACCGCCGCCACAAACACCATCTGCTGCTC CCGCACCCAAGAAAGTCATCATCAAGAGTGCTGATATGCTCCCTGACATGCAGAAAGAGGCCGTTGATATCGCCGTCGCG GCATTTGAGAGGCTCAATGTGGAGAAAGATGTTGCTGAGCATATCAAGAAGGAGTTCGATAAGAGGCATGGACCCACTTG GCATTGCATAGTTGGTCGCAATTTCGGTTCGTATGTGACTCATGAAACAAACCACTTTGTGTATTTCTATTTGGATCAGA AAGCGGTTTTACTTTTCAAGTCTGGCTAG
Protein sequence (LotjaGi4g1v0339200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSDEARRNSVVVGGGGGGGAPPLLTARPNSEDRKPMLSSLSPPPPPQTPSAAPAPKKVIIKSADMLPDMQKEAVDIAVA AFERLNVEKDVAEHIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 34 | 142 | 109 | 5.7E-48 | – | |
| PANTHER | 34 | 142 | 109 | 5.7E-48 | ||
| MobiDBLite | 39 | 53 | 15 | - | – | |
| SMART | 54 | 141 | 88 | 1.1E-53 | ||
| SUPERFAMILY | 54 | 142 | 89 | 3.14E-37 | ||
| Gene3D | 55 | 142 | 88 | 8.8E-41 | ||
| Pfam | 58 | 141 | 84 | 4.6E-38 | ||
| ProSitePatterns | 108 | 122 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Microtubule associated complex | Any multimeric complex connected to a microtubule. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi4g1v0339200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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