Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0341200.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0341200
Transcript ID	LotjaGi4g1v0341200.1
Lotus japonicus genome version	Gifu v1.2
Description	Zinc finger homeodomain protein; TAIR: AT5G60480.1 homeobox protein 26; Swiss-Prot: sp\|Q9FKJ9\|ZHD12_ARATH Zinc-finger homeodomain protein 12; TrEMBL-Plants: tr\|A0A0L9VGB3\|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0341200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:72109452..72110396) extracted from Lotus japonicus Gifu genome v1.2.

CCTAATCTTTCAATCCTACATCTTAGTGTCATAAAAAACCATGTCTGATGCTGAGATCAATTTTCCTCCACCAGGTTTTG AGCAAGAAGTGGTGTACCTAGAGTGCAAACGCAACCATGCTGCATCACTAAACCGTGTTTGCTATGATGGATGTCAAGAG TTTCTCAAAGCAAGTGTTGAAAGCAACACCAAAGATGCTATGCTATGTGATGTTTGTGGGTGTCATCAGAACTTTCATCT CCAACATACTATGTACACCCCTAAAGCCCAGAGCCAAACAAGGAACACTCCGAACATAGTAAGTTCACTTGTAGGCCCAT CTGATCCTCATGTGGAATTTAGGGTGAGTGCCGAAAATAACCCTGAGAATGAGATGATAGTGATGCTGCCAAAGCCAAAG AGGAAGAAGAGAACGACTTTCACGGTGCACTTGAGGAATCGAATGACAGAATTCGCTAACAGGATAGGGTGGACACCTAA AGGAACTAAAAGGGAGGAAATTGACAATTTTTGCTTAGATATTGGAATTAGTTATACAACATTCTTAGTGTGGTTGAACA ATCACCGTCCTCGAGCAATGAAGAAAAATACAGAAATGGCAAATTGAAAAGCTGAAAGTCAATCATCATACATCATCCTT GGAAGTTGGCATTCGAGTTTTTTCCTTAAGGAGTCTGGTTTTGTTGTAAGTGCGAAAGACAATTTTAATTTATGGTGTGT TAGGGTTTCAGTTGTCTGCTTCTCAGTTTTCGTCTTTGTTATCGGTGTTAAGTTTTAATCTATCTTGAGTAATTTTAATT TATGGTGTGTTAGGGTTTTTGTTGTCTGGTTCTCAATTTTCGTCTCTGTTATCGATGTTAAGCTTTAATCTGTCCTAAGT AATTTTAATTTATGGTGTGTTAGGGTTTCTGTTGTATGCTTCTCAGTTTCCATCTTTGTTATCGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0341200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGATGCTGAGATCAATTTTCCTCCACCAGGTTTTGAGCAAGAAGTGGTGTACCTAGAGTGCAAACGCAACCATGC TGCATCACTAAACCGTGTTTGCTATGATGGATGTCAAGAGTTTCTCAAAGCAAGTGTTGAAAGCAACACCAAAGATGCTA TGCTATGTGATGTTTGTGGGTGTCATCAGAACTTTCATCTCCAACATACTATGTACACCCCTAAAGCCCAGAGCCAAACA AGGAACACTCCGAACATAGTAAGTTCACTTGTAGGCCCATCTGATCCTCATGTGGAATTTAGGGTGAGTGCCGAAAATAA CCCTGAGAATGAGATGATAGTGATGCTGCCAAAGCCAAAGAGGAAGAAGAGAACGACTTTCACGGTGCACTTGAGGAATC GAATGACAGAATTCGCTAACAGGATAGGGTGGACACCTAAAGGAACTAAAAGGGAGGAAATTGACAATTTTTGCTTAGAT ATTGGAATTAGTTATACAACATTCTTAGTGTGGTTGAACAATCACCGTCCTCGAGCAATGAAGAAAAATACAGAAATGGC AAATTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0341200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDAEINFPPPGFEQEVVYLECKRNHAASLNRVCYDGCQEFLKASVESNTKDAMLCDVCGCHQNFHLQHTMYTPKAQSQT RNTPNIVSSLVGPSDPHVEFRVSAENNPENEMIVMLPKPKRKKRTTFTVHLRNRMTEFANRIGWTPKGTKREEIDNFCLD IGISYTTFLVWLNNHRPRAMKKNTEMAN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31948:SF66 View details on PTHR31948:SF66 Search for proteins/transripts with this domain View external data on PTHR31948:SF66	16	179	164	1.4E-39	–
PANTHER	PTHR31948 View details on PTHR31948 Search for proteins/transripts with this domain View external data on PTHR31948	16	179	164	1.4E-39	–
Pfam	PF04770 View details on PF04770 Search for proteins/transripts with this domain View external data on PF04770	17	69	53	2.4E-17	IPR006456 Show description in modal box View details on IPR006456 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51523 View details on PS51523 Search for proteins/transripts with this domain View external data on PS51523	19	69	51	18.509	IPR006456 Show description in modal box View details on IPR006456 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01566 View details on TIGR01566 Search for proteins/transripts with this domain View external data on TIGR01566	19	67	49	5.2E-17	IPR006456 Show description in modal box View details on IPR006456 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.10.60 View details on G3DSA:1.10.10.60 Search for proteins/transripts with this domain View external data on G3DSA:1.10.10.60	104	181	78	2.7E-15	–
SUPERFAMILY	SSF46689 View details on SSF46689 Search for proteins/transripts with this domain View external data on SSF46689	115	181	67	3.93E-9	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01565 View details on TIGR01565 Search for proteins/transripts with this domain View external data on TIGR01565	120	176	57	3.9E-17	IPR006455 Show description in modal box View details on IPR006455 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0341200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…