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LotjaGi4g1v0341900.4

Overview

Field Value
Gene ID LotjaGi4g1v0341900
Transcript ID LotjaGi4g1v0341900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Protein phosphatase 2C-like protein; TAIR: AT3G16560.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9LUS8|P2C40_ARATH Probable protein phosphatase 2C 40; TrEMBL-Plants: tr|A0A0B2P5Q8|A0A0B2P5Q8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0341900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72161597..72163913) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTACAAATGTAATAGTTATGGAGGTATTCCTTGTAAGACCAC CAATGGCTACGAAACCCTTCCTGAAGTTCGTAGGACAAGTAGTTTCTCTTGTTTGTCAGGCGCAGCCTTAAGTGCAAATG CCACACTAGCCAACACAAACATCTGCAATGGTAAGATAGGAGGGGAAATCCTTCCAAGTTGGGACTCACCAAATTCCTTT CGTAAAGTACCCTCTTCGCCAAGTCTTTCAAAGTTGGACAGATTATCATCTTCCCTCCCAAGTAATCTATCTTACCTAAG CTGCAGTCCTTCTACTCCAAGTGATATCCTTGAATATGACTCTTGCACATTAAAATCCATGAGTGATACTCCTAGAAGTG AAGGATTTCTTAATGCTGGTGAACTTCAAGTCGCAGGAGGAGCAGCTGGCGAAGATAGAGTTCAAGCAGTTTGCTCTGAA GAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCGGCTGACTTTCTTGCCGGTACCCTGTA CGACACCATCATATCTTACTTGAATAAGTCAATTTTGGGATTGGAGCCGGGTTCCATTGAAACTTCTAACAATGTGGATT TGGGTGAATCCCTCCTGAATAAGTTGGATGGTAGTCTTATTTTTCAGGAGGATCAATCTCTGTCGACATTTACGGGGAGA AATGATTCTAATCATGGTTTTGCAAAGGATAGTCTATCTACTAAGTCTGGAGCATCATGTGAGTCATCTTCAAACGGGGT ACTTGATAGCCTCCAAAGCGCACTTAGTCAGGCTGAAAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTC CAGATTTAGTTTCTATTGGATCGTGTGTTCTGCTTTTGCTTCTTCATGGTAATGATTTGTACACACTTAATCTAGGTGAT AGCAGAGCAGTATTGGCTACATGTGGTGCAGGTGACACAATAAATAACCGTGATAGACTCCAAGCTATACAGCTTACTGA CAGTCATAATGTTGATAACGAAGCTGAAAGAGCAACACTTCTTGGTGATCATCCTGATGATCCGAGGGTCATTGTAGGGG GAAAAGTGAAAGGTAAACTGAAGGTTACTCGTGCATTCGGGGTTGGCTACTTGAAAAAGGTTGGTATTCTCTCTTACATT TTGGGGAGCATTTGGATAAATAACTTAATTAAGATCTTATGTCAATAAGCATTTATCGCATAAGCGCTAATTCATAAGTT AATTAGAGAATTATTTTTGTAATAAGATCAACATAGGTTATAGGTAGGTGTATAAACGCTTATTCATTAGCTAATCTGAG TAGTTTATGAAAATAAGCTCAAAACAATTTATATATAGGTCATAAGCTATTTACATAAGCTCTCCTTGACATTTGCATAA GCGCTTATGCTATAAGATAAGCTCATCCAAACAAGACCCGAGTGAATGGGGTGCAAAGAATTAATCTTTGTCCTACCAAA GAGATTTATTTTCTTATTTTCCCCCATGCAGAAGAATCTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGCGATCTTA AGAGCCCGCCATATGTTTCCACTCAACCATCAGTGAATGTCCGAAAAATCTCAAATTGTGATCAATTTGTTATACTAGGG AGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTAGTGGAGTCTTATATCTTGAGCAATCCTTTTGG TGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGTTAGAGCAGCTGATTCTGCAGGTCAGGTTCTAGGTCTTATGCTAA ATTAGTTTTATTTGCATGAATATAGCTTTTTATAGACTATATAGACACATTGGTCCTTAAAAGATACGACATCAGCCAAC TTAATCCCCGAAAGATGGAAGTTGGCAAAATAGTCTCTGTAAGATGAAAACAGATCAATTTAATTCTTGAAAGACGAAAA TTGTGGTCAATCTGGTCTTTGAAAATTAATAAGGTGATTCATTTTAGTCCCTGGGAGAACTAAATTGAATTTTTTCTTCA TCTTTCAGTGTAGTTTTGAGCTAAACTGGCCGACCTGAAATTTTTCCGGGACCAAAGTGACTATTCAGTCGGTTTTTATA TGTTGTGTTATTAAGTAAAGCTCTTGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCGGCAGGGAGGAGAAGAAAGT ACCATGACGATGTGACGGTAAGTGTGATCATGCTTGGGATGAATCAGCGGACTTCAAAGGCTTCAACTTGCATCTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0341900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTACAAATGTAATAGTTATGGAGGTATTCCTTGTAAGACCAC CAATGGCTACGAAACCCTTCCTGAAGTTCGTAGGACAAGTAGTTTCTCTTGTTTGTCAGGCGCAGCCTTAAGTGCAAATG CCACACTAGCCAACACAAACATCTGCAATGGTAAGATAGGAGGGGAAATCCTTCCAAGTTGGGACTCACCAAATTCCTTT CGTAAAGTACCCTCTTCGCCAAGTCTTTCAAAGTTGGACAGATTATCATCTTCCCTCCCAAGTAATCTATCTTACCTAAG CTGCAGTCCTTCTACTCCAAGTGATATCCTTGAATATGACTCTTGCACATTAAAATCCATGAGTGATACTCCTAGAAGTG AAGGATTTCTTAATGCTGGTGAACTTCAAGTCGCAGGAGGAGCAGCTGGCGAAGATAGAGTTCAAGCAGTTTGCTCTGAA GAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCGGCTGACTTTCTTGCCGGTACCCTGTA CGACACCATCATATCTTACTTGAATAAGTCAATTTTGGGATTGGAGCCGGGTTCCATTGAAACTTCTAACAATGTGGATT TGGGTGAATCCCTCCTGAATAAGTTGGATGGTACATCATGTGAGTCATCTTCAAACGGGGTACTTGATAGCCTCCAAAGC GCACTTAGTCAGGCTGAAAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGG ATCGTGTGTTCTGCTTTTGCTTCTTCATGGTAATGATTTGTACACACTTAATCTAGGTGATAGCAGAGCAGTATTGGCTA CATGTGGTGCAGGTGACACAATAAATAACCGTGATAGACTCCAAGCTATACAGCTTACTGACAGTCATAATGTTGATAAC GAAGCTGAAAGAGCAACACTTCTTGGTGATCATCCTGATGATCCGAGGGTCATTGTAGGGGGAAAAGTGAAAGGTAAACT GAAGGTTACTCGTGCATTCGGGGTTGGCTACTTGAAAAAGAAGAATCTGAATGATGCTTTGATGGGAATCCTTCGAGTTC GCGATCTTAAGAGCCCGCCATATGTTTCCACTCAACCATCAGTGAATGTCCGAAAAATCTCAAATTGTGATCAATTTGTT ATACTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTAGTGGAGTCTTATATCTTGAGCAA TCCTTTTGGTGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGTTAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAG AGTTGATGAATGTTCCGGCAGGGAGGAGAAGAAAGTACCATGACGATGTGACGGTAAGTGTGATCATGCTTGGGATGAAT CAGCGGACTTCAAAGGCTTCAACTTGCATCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0341900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSPEGELKISFGYKCNSYGGIPCKTTNGYETLPEVRRTSSFSCLSGAALSANATLANTNICNGKIGGEILPSWDSPNSF RKVPSSPSLSKLDRLSSSLPSNLSYLSCSPSTPSDILEYDSCTLKSMSDTPRSEGFLNAGELQVAGGAAGEDRVQAVCSE ENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYLNKSILGLEPGSIETSNNVDLGESLLNKLDGTSCESSSNGVLDSLQS ALSQAENDFLYMVEQEMEERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCGAGDTINNRDRLQAIQLTDSHNVDN EAERATLLGDHPDDPRVIVGGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYVSTQPSVNVRKISNCDQFV ILGSDGLFDFFSNDEAVKLVESYILSNPFGDPAKFLIEQLVVRAADSAGFSMEELMNVPAGRRRKYHDDVTVSVIMLGMN QRTSKASTCI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF550
29 487 459 2.6E-168 –
PANTHER
PTHR13832
29 487 459 2.6E-168
IPR015655
Gene3D
G3DSA:3.60.40.10
116 486 371 2.1E-77
IPR036457
SMART
SM00332
127 475 349 8.0E-48
IPR001932
ProSiteProfiles
PS51746
136 477 342 35.649
IPR001932
CDD
cd00143
149 475 327 1.70061E-45
IPR001932
SUPERFAMILY
SSF81606
150 478 329 1.96E-45
IPR036457
Pfam
PF00481
159 431 273 9.2E-29
IPR001932

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0341900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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