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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342500 |
| Transcript ID | LotjaGi4g1v0342500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier protein-like; TAIR: AT5G48970.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q5IS35|TPC_MACFA Mitochondrial thiamine pyrophosphate carrier; TrEMBL-Plants: tr|A0A1J7ITD3|A0A1J7ITD3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0342500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72228158..72230854) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGGTGTACAGGTACAACAATAACCCTCCTGTATGATTCTGTAGTA GGAAGTTAATCCTGGTTCTGCATTGAATTGTGTGCCCATTGCCAATCCAAACACACTATAAGTCTATCTTGGTGCTTTTT TTGAAGTTTTCTGCCCTTTATTTCTGTCCAATTTGTTTTTTCAGGGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCATG GTTATGCCATATACAGCTATACAGTTTACAGTTTTACATAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGGTAT GATATTTTGTTGTTCAATGTACCAATATATCGGCTTCATTAGTATTGTATTGAGACTCAAATTATGTTTTGTTGCATCGT CAGCAGTTGTTGCAAGTTTTGACTTCTGTCAGTTAGGTCCATAAGATAAGCTCTTTAAATTCATTTTGATATCTTGCATA GGACTTTTTTGGAAGAGGATCCTCTCTGTAGTTATTAGGTTTATGATCTATGCATGCAATTCAAAACTTATGCCTCTGCA CACTGGAATAATAATTGCATGCCTGGAAATTACCTATATCTTCTCCAATTCTAGATTTATGTGGTTCATTGGCGGCTTTT TATTTCTGCAGAGAATCACATTGGTTTGAGCCCTTATCTATCCTATGTCAGTGGGGCATTAGCTGGCTGTGCAGCTACTC TAGGTTCATATCCCTTTGATCTTCTCAGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTATTAACTATGATTTAATTT AAGACAGTTTCCAAGTTAGTATGTTAATGTTTATTCTGAAGGCCAGTGAAGCATTTTACTTGTCTGCTTTTTATACACCA TCCTCCTGTTCATAGACTTCTTCTGTGGTTTTCCTTTCCATCATGAACCTACATCTCAATCTATTGCTTGAAAGGTTTAG GTGGATAGAATTATTTTCATTCATTCTCTTCGTCTGTTTTATTTTTTGTTGTTTTTTTGGGCGGGGGATGCTTCTCTTTG ATCCCTTGTGTAGAGAATTATACACTATAGTTTGTCATATCAGATCATATCATGTAGGAGTTCTGTTAGCTTCAAAGCTA TATCAAACCTGTAAAGTGCACGTTTCCCACTTTAAATGCCTAGAGTGGTGCCAATCTTTGTCCTTCTAGTTAAGATGTGC TATATGCTCCTGTTTGGCTTGTGTGAAAATGCTGATCCCTGATGTTGTTTTGGTCCTCTTGGAGCTTTTCCCCCTTTTCT AGTAACAAGGATTTTCTATATTTTCCAAACATTTAGGTGTATCCAAACATGAGGTCAGCATTTGTGGATATCATCCAGAC TCGAGGATTTCAAGGCATGTATGCTGGATTATCGCCAACTCTAGTTGAAATTATACCTTATGCTGGCCTACAATTCGGCA CCTATGATACATTCAAGCGTTGGGCCATGGTAAAATCTCAGTCATTCTATTTAACATCTCAATTTTATTAGTTGACATAA TTATGCCCTGCATGAATTGGGTGTTGTGCTTTGTTTGTGGTGCAACTCGAGTAAGCTGAAATTGTGTATTGTTCTAGATT CTGCATGATTGGTTTATTCTACTTGTTTTGCTTTGTATTATGCCACCATTTTAAATCTTGGTGGAAAATTATAAAGTTAT TCATATCTCTTAAGTGTATAATGCCTTCTAGTATAATTTTGAGGATTGCTCTAAAAGTTTCTTATTTTAGATTCTAACAT GGATTATGTTGGCTTTTCATGGTAATCACTGCAATTGCACAAGCTATCTGGACGAACAATACATCTATACAGCAGTTTTT TTTTTTCTTTTTTTCAAAAGGAGAATATATATAATAATAATGAGGAAACCGACAAGATATAATTTGAGAATTAAAGCATG TTCATGCTTCGTACCTAATTGTTAGGTTTGTATTGTAGCACAGGAGTAAAGGAACCTTGAAATTTATTTCATCATCACTA TAAATTTGTTTCCACATGTATGTTGTATTGTTGTAGCATTTACATGACAGATGGGGCTGGATTACATCATACAGCGGATT AGTTTTTTGTTTCGATTTCACTTTACAGTTCTTTGAAACTTTGTTTTTTTTTTTGAATTGTCTGTGTGAAATTGCAGGCT TGGAACCATTATAGGTATTCCAACACCTCTGCAGAAAATAGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGC TGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTTGTCAAGAAAAGATTTCAGGTAAACATTTTCTGCTTATTTT TGTATTGGGACAATGGGTTTTTCTATCTCATGACAAGGTAATTATGGATGTTCATTCTTTGTTTGCTACACAGATCGAAG GGCTTCAAAGGCATCCTAGATACGGTGCTCGAGTTGAGCGTCGGGCGTACAGTAGTATGTTCGACGCTATACAAAGGATT TTACGGTTGGAAGGTTGGGCTGGTCTGTACAAAGGGATAATCCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTGAC ATTTGTTGCATATGAATTGACATCAGATTGGCTAGAGTCCCTTGTGACCTAGATATTTTTTCCCACTTTTTATGATCATT TATCATATTCATTTTTGAAAGTATAATTATAAATTGATTCCCTCGTAGGATAGGTAG
CDS sequence (LotjaGi4g1v0342500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCAAGCAAGTAAAGATATTCTAAGAGAAGAAGGTGTACAGGGCTTTTGGCGGGGAAATGTGCCTGCACTGCTCAT GGTTATGCCATATACAGCTATACAGTTTACAGTTTTACATAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGA ATCACATTGGTTTGAGCCCTTATCTATCCTATGTCAGTGGGGCATTAGCTGGCTGTGCAGCTACTCTAGGTTCATATCCC TTTGATCTTCTCAGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATTTGTGGATAT CATCCAGACTCGAGGATTTCAAGGCATGTATGCTGGATTATCGCCAACTCTAGTTGAAATTATACCTTATGCTGGCCTAC AATTCGGCACCTATGATACATTCAAGCGTTGGGCCATGGCTTGGAACCATTATAGGTATTCCAACACCTCTGCAGAAAAT AGTCCCTCCAGCTTTCAGCTTTTCCTCTGTGGGTTGGCGGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGT TGTCAAGAAAAGATTTCAGATCGAAGGGCTTCAAAGGCATCCTAGATACGGTGCTCGAGTTGAGCGTCGGGCGTACAGTA GTATGTTCGACGCTATACAAAGGATTTTACGGTTGGAAGGTTGGGCTGGTCTGTACAAAGGGATAATCCCATCTACTGTT AAAGCTGCACCAGCCGGTGCTGTGACATTTGTTGCATATGAATTGACATCAGATTGGCTAGAGTCCCTTGATAGGTAG
Protein sequence (LotjaGi4g1v0342500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQASKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHIGLSPYLSYVSGALAGCAATLGSYP FDLLRTILASQGEPKVYPNMRSAFVDIIQTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHYRYSNTSAEN SPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYSSMFDAIQRILRLEGWAGLYKGIIPSTV KAAPAGAVTFVAYELTSDWLESLDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 254 | 254 | 8.11E-66 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| Gene3D | 1 | 263 | 263 | 1.4E-70 | ||
| Pfam | 1 | 46 | 46 | 1.8E-9 | ||
| ProSiteProfiles | 1 | 45 | 45 | 14.318 | ||
| PANTHER | 2 | 262 | 261 | 4.3E-170 | – | |
| PANTHER | 2 | 262 | 261 | 4.3E-170 | – | |
| PRINTS | 20 | 40 | 21 | 3.1E-13 | ||
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 60 | 20 | - | – | |
| ProSiteProfiles | 58 | 144 | 87 | 22.492 | ||
| Pfam | 60 | 145 | 86 | 3.2E-20 | ||
| Phobius | 61 | 81 | 21 | - | – | |
| PRINTS | 73 | 91 | 19 | 3.1E-13 | ||
| Phobius | 82 | 265 | 184 | - | – | |
| PRINTS | 117 | 135 | 19 | 3.1E-13 | ||
| ProSiteProfiles | 162 | 259 | 98 | 24.208 | ||
| Pfam | 163 | 260 | 98 | 2.0E-22 | ||
| PRINTS | 171 | 193 | 23 | 3.1E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0342500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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