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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342800 |
| Transcript ID | LotjaGi4g1v0342800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3S3Z9|I3S3Z9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0342800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72256834..72259248) extracted from Lotus japonicus Gifu genome v1.2.
GTTAACAACTATCTAAAGCCTTTAAGAAAAAGACAAGTATCTATAGAACCCTTAGATCCGCAAGTACACACTACAAAGGA GGGTTTGGATTCCAGCTAGAAAACCCAGCATCGAAGCAGTGAAAACGGTACTGACAAATCTCTTCCTTCTTCAGATTTAC AATTTCACAAATCTAGTTGACACTGTGATTTTCAAACTCATGATTTTAATTTGTTATTTCATTTGGGGAATGAGTAATGA CCCTTGAATGTTGTGGTCTGTGTCTCAGTGATTTTACATTTTTAATTTGTTTTTTTTTTTCGTTCCACTGCATATTTGAA CTTGTGGCTGTGAGATTTAGTAATTTGATGAATTTTAAGTACAAGATTGTTATGAGCTGTCAGCTGAGTATGAATGGAAG CATAAACCTTAGAAGTTGGAGGAACTTGGGAACATGCTGCTGAGTGCTGACTGGTCTTGATGCCATGGAAAGCTTCTAGG GTCAGTGGTAGATTTGTGTTCTGTGTGTTTGATATCAATGGCGGTCGACAGGATTAGCATGTTGCCAGATGAAGTACTTT ATCACATTCTCTCTTTTCTCCCAACTCAAATGGCTGCAAAAACAAGTATTCTTTCGAAGAGGTGGAAGCCACTATGGCTC TTAGTTCCTACTCTCTTCTGCGACGACCGAAGCTACCTCCGAAACTACAAACCCTATCATTACTTCACAAAGTTTATATA TGCAACCATTCTCGCTAGAGATGTGCCCATTACAACATTTCGTCTGCAATGTGAGGCTTCCAATACCGACTTTTCTGTTT CCGATCTCCAGATTTGGGTCAATGCTGCAATACAACGTGGACTTGAGAACCTCTACATCCGGCTGCCGCATAATGAAAAT CAATTGAGCTGGAATTCCTGCATTTTGGGCTGCAAAACTCTGGTTGTTCTCAAGTTGGCGGGGTTAGACCTGGATGTAAT TTCTTTTGCTCACCTTCCTTCACTCAAAACTCTGCATTTGTTTGATGTTACCTTTCTAGAACCCCTGTATCTTGTGTCTT TTGCTGACCTTCCTTCACTCAAAACTCTGGATTTGAGAGATGTTGACTTTCCAGAACCGCAGTGTCTTGTGGATCTTCTT GCTGGATGTCCAAATCTTGAGTATATGCGTCTGAGGGATATATTCTATGATGATGTTGACGCTATAGTTCATTATAAGAA CTTCAAAAGCTTATCTAAGTTGGTCAGAGCAGATATACATTCCGTTCTTTTTGATATTTTTGTTGAATCTCCTAAATTTG ACAAGGTTTGTATAAATGTTAAAAAGTGTGTTTAATTCGTTTGGTTTTGAAAAATGTCACTAATGTTTGTTAGTACTCTT TTTAACTCTTGCAGTACCTGGATGACATTCTACTTTTTCCCAATTTAACTCATGTGGAGCTTATGTTCGGACTTTGGATG AGCTGGGATTTTGTACTTGCAATGCTCAAGCACAGCCCTATGCTTCAATATGTTGTCCTTAGTATGCAGATACAAAATGG ATTTTATCAATATCCGGTTTGGATTTCCCCCTGTTTTGCTCCTGAATGTCTTTCTTCACAGCTTAGGAAATGTTCCATTA TAAATTATGCAGGCAGGGAAAGTGAGCTGCATTTTGCAAAATATATTATGCAGAATTCAAAAGTTTTACGGACAATGACA GTATGCACTCTGCGTTACTCAGAATTAAAGGTCGAAGACAAGCTTGAACTACTGAAAGAGTTGTCCTTATGCCCAAGGAG TTCTTCAATATGTGAACTTTCATTTACATGAAAATGAATGACAGGCTCTAGTTAGTAGCTGCCAATTGTGTTTAGATGAT TGCTTTGGTACTTAGTTTATCTACTACGTCCTATAGTAAAATTACTAGTGTTTTGAAGGACATGGAACTTGTCTCTTGTT CAATGAAAGTCGTTAAATGTCATTTTTTCAAGTAAGTGAAGATTTGTATTTTTAATTAAATGACTAGCTCCTTTGAAGTT TTATATCTTTTGTGGACATTTTTTTGGAGTTTAGTTACACCTATACCCATCTTGTGGTTATTGGTCTGCTGAATATTGAT ATGCTGTGGAGTTTTTATTATTTGTATATACCAAGCATGCACATATCTAGAATTGAACATTATGTGGGGTTCTGCCCATA CCTACCCTTCTCCCCTCCAATGTTGTCCAAAATTATTATTTAGCTCACCATTTTTTTCAGCAATCATGCATTCATGTGGT TCTGGGGTGCTAGGTGATGATCGACTTCCTGATAGAAAGGTTCATTAACCATCTAGAAGGGCGTGATTACGTGGGGTTCT GTTGTTGGTTTGCAGTTCGAGTCTTTCTATGAATAGGTTCTGGCATTTGGATAGGTGTCTCTTAAGTTCTTATTTTATTA TTGTTTTTTCTTAAC
CDS sequence (LotjaGi4g1v0342800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTCGACAGGATTAGCATGTTGCCAGATGAAGTACTTTATCACATTCTCTCTTTTCTCCCAACTCAAATGGCTGC AAAAACAAGTATTCTTTCGAAGAGGTGGAAGCCACTATGGCTCTTAGTTCCTACTCTCTTCTGCGACGACCGAAGCTACC TCCGAAACTACAAACCCTATCATTACTTCACAAAGTTTATATATGCAACCATTCTCGCTAGAGATGTGCCCATTACAACA TTTCGTCTGCAATGTGAGGCTTCCAATACCGACTTTTCTGTTTCCGATCTCCAGATTTGGGTCAATGCTGCAATACAACG TGGACTTGAGAACCTCTACATCCGGCTGCCGCATAATGAAAATCAATTGAGCTGGAATTCCTGCATTTTGGGCTGCAAAA CTCTGGTTGTTCTCAAGTTGGCGGGGTTAGACCTGGATGTAATTTCTTTTGCTCACCTTCCTTCACTCAAAACTCTGCAT TTGTTTGATGTTACCTTTCTAGAACCCCTGTATCTTGTGTCTTTTGCTGACCTTCCTTCACTCAAAACTCTGGATTTGAG AGATGTTGACTTTCCAGAACCGCAGTGTCTTGTGGATCTTCTTGCTGGATGTCCAAATCTTGAGTATATGCGTCTGAGGG ATATATTCTATGATGATGTTGACGCTATAGTTCATTATAAGAACTTCAAAAGCTTATCTAAGTTGGTCAGAGCAGATATA CATTCCGTTCTTTTTGATATTTTTGTTGAATCTCCTAAATTTGACAAGTACCTGGATGACATTCTACTTTTTCCCAATTT AACTCATGTGGAGCTTATGTTCGGACTTTGGATGAGCTGGGATTTTGTACTTGCAATGCTCAAGCACAGCCCTATGCTTC AATATGTTGTCCTTAGTATGCAGATACAAAATGGATTTTATCAATATCCGGTTTGGATTTCCCCCTGTTTTGCTCCTGAA TGTCTTTCTTCACAGCTTAGGAAATGTTCCATTATAAATTATGCAGGCAGGGAAAGTGAGCTGCATTTTGCAAAATATAT TATGCAGAATTCAAAAGTTTTACGGACAATGACAGTATGCACTCTGCGTTACTCAGAATTAAAGGTCGAAGACAAGCTTG AACTACTGAAAGAGTTGTCCTTATGCCCAAGGAGTTCTTCAATATGTGAACTTTCATTTACATGA
Protein sequence (LotjaGi4g1v0342800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDRISMLPDEVLYHILSFLPTQMAAKTSILSKRWKPLWLLVPTLFCDDRSYLRNYKPYHYFTKFIYATILARDVPITT FRLQCEASNTDFSVSDLQIWVNAAIQRGLENLYIRLPHNENQLSWNSCILGCKTLVVLKLAGLDLDVISFAHLPSLKTLH LFDVTFLEPLYLVSFADLPSLKTLDLRDVDFPEPQCLVDLLAGCPNLEYMRLRDIFYDDVDAIVHYKNFKSLSKLVRADI HSVLFDIFVESPKFDKYLDDILLFPNLTHVELMFGLWMSWDFVLAMLKHSPMLQYVVLSMQIQNGFYQYPVWISPCFAPE CLSSQLRKCSIINYAGRESELHFAKYIMQNSKVLRTMTVCTLRYSELKVEDKLELLKELSLCPRSSSICELSFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 48 | 47 | 1.83E-11 | ||
| PANTHER | 3 | 174 | 172 | 8.5E-78 | – | |
| ProSiteProfiles | 3 | 56 | 54 | 9.895 | ||
| PANTHER | 3 | 174 | 172 | 8.5E-78 | – | |
| Gene3D | 4 | 392 | 389 | 2.5E-27 | ||
| SUPERFAMILY | 124 | 299 | 176 | 4.45E-15 | – | |
| Pfam | 155 | 170 | 16 | 0.37 | ||
| PANTHER | 177 | 391 | 215 | 8.5E-78 | – | |
| PANTHER | 177 | 391 | 215 | 8.5E-78 | – | |
| Pfam | 180 | 205 | 26 | 4.7E-5 | ||
| Pfam | 317 | 359 | 43 | 5.0E-14 | ||
| SMART | 320 | 394 | 75 | 1.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0342800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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