Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0345600 |
| Transcript ID | LotjaGi4g1v0345600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-modifying protein YgfZ; TAIR: AT4G12130.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q8L733|Y4121_ARATH Putative transferase At4g12130, mitochondrial; TrEMBL-Plants: tr|I1LGL4|I1LGL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72525670..72528136) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAAACATTTTCACCATCTTCTTCTTCTTCTTGTTCTTCACTCTAAGAACAACAGTAACCATGAATCGCTTAGCAT TTCCCAAATCATTTGCTCCACGTTGCAGAGCCATACACCAAGCAACCAGCAACCACTGCCGACGAGAAACCCAGCTCCAA ACTCCCGCCGGCCCCGTCGCCTCCCTCCTCAAGTCCCGTTCTGTCATACGATTCCGAGGAGCTGACACCATCAAGTTCCT TCAGGGTCTGTTGACCAACGATGTACGGCGGTTCGGTGAAAAAACCACCGCCAATGAGCCCACACCCACGGCGGTTCCTC CTTTATATGCTGCGCTGTTGACTCCTCAAGGGAGGTTCCTCTATGACCTCTTTCTATACAACCCGCCCAGAGCTACCGGC AAGGTTGATGAGCCCTTTGATTTGTATGCCGATGTCGATGCTTCTGTGTTGGATGAATGTTTCGAAACTTTCATAAAGTG AGTTTCTTTCTTTCTGGGCATACTGATTATCCTTTTATTGAGGTGGATTTTTGTTTGTTATGTAACCATTGATTGTTAAT GTTACATTTGTTTGACGGTCAAAGTCAGGGTTGGAATTTATGTGTTTGATGATATTGCTATTACAATTCCTAATGTTCTA GGATTGGAATGATGACCGTAACTAGTGATTTCATGAGGAACATTTGGAAAGGTCACGAGGAAGATGAGTTGTTGCAACTT GAAAGAGAAAGTGAGTAGAGTAGTACAAAAGGACTGTAACAGTAGGTTTCTATTTTTTTTTCTTTTAAAATAACAAACTA TTTAGTGGAATTAAATTAAGGTGATAATATAATGGAACCTGGAGGGCTGAATTTTTTTTATTCAATGACTACTTCTGCAG CTTTGTAGGCCATTACCAGCTTCCAGCTTTACTTCATCTTTAAATTTGTAGCTGGTAGACATTGTGGTGTAGACTAGACC AACAGGCCTAGGCATATAAGAATCTCTCTATCCATACTCTTATTGTCTGGTTCTCATTTCTGAGATTTGGTTCCAGAGAC CTTAACCTTAACATTTTAGTGCTGCTGTGCTGCAGATACCGGTTGAGGTCAAAGGTTGAGATTGATAATGTCACAAACGA TTTCTCATGCTGGCAGCGTTATGGTTTTGGCTCTACTGAGAAGTCCTCAAACGTAGAAGAACCAGAGGCAACCTCTGTTG GCTGGGGTGCTGGTGTGAATGATGCTGCAATGTCAGCTTCACGTGGGGGTAACATTGGGTGGCAATGGTTTAAGGATCCC AGATTGGACTGTCTTGGTTTCCGAGGGATCTTCCCGTCAAATATAACTCGTTAGTATTTATTATTCCTCTGCTGTTAATA AGATTTGCATCTATTTATGCTGGAATCTTTTATATTACTGTCAAAAATCTCTACATATTTAGTCTAAAAGGCATCCCTCT ACGTGTTTCAGCACCTCTAATTGAAGCTGACAAAGAGACTGATGAAATGAACTATCTTTTGTGGAGGATAGAGAAGGGAG TCGCAGAAGGATCAACCGAGATTCCAAAAGGTGCATAGCTGTTTCATTGTAAGAATTCCTCTTCAGAATTCTTTTCACTA GCTGCATCTAACTATCTATCTTGAATTCTTGATTAATCGATCATGCGCAGGTGAGGCAGTACCGCTTGAGTATAATCTTG TAGGGCTTAATGCAATCAGCTTTGACAAAGGTTGCTATGTAGGCCAGGAATTTGTCGCTCGTACACACCACAGAGGGGTG ATTAGGAAGCGCATAGTTCCTCTAAGGTTTCTTGACAACAATGAGAAAGGTAATGCTCCATGGAGTACTTCTATATCATC ATGTATAATAAAATGACGAACTTTGAGGCCATTCCAATTTCTGATATTCCAGAATTAGCAGACAAAGTCATTCCTGGCTC AGAAGTGATAAACACGGCATCTGGTAAAAAAGTCGGTACAGTGACTACTGCCCTAGGCGGTCATGGGCTGGGGCTCTTGC GACTAGAAGAAGCGTTGAAGGGGTCTGGTGCCTTATCCATTCAAGGACAAGAGGATGTGAAGGTTGTTGCTAATAAACCA GCTTGGTGGCCTTCTGAATGGCTTCAAGATCATCAACAACACACTGCTTTTGCCTAGGATGCTCAAAGTCCTTCAAAAGA TCAGTATTTAAGAAAAAAATGGTGGGTGAGTTAGCTTATAAACGTGGAGTTAATGTAATCCTTATGCTTCCACAGGGTGA ATAGCTAGTGAAAAAGGAAACTGGAAGATGGCACTTTTGTATTTCTTGCGGTATAAGTTCCCTAATGTAAAACAATTTTG TTTTTGGCAATTTAGAAAGGAAAAAGATACCTGTGCAAAGTCAGCTGTTTCAGCATACATGTTTGTAACTAGCAGTACAT TTGTGGCTTTATAATATATAACTTGGGTGTTAACGAATTGCTATACAGAGATTAACATAGTTTTGAA
CDS sequence (LotjaGi4g1v0345600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGCTTAGCATTTCCCAAATCATTTGCTCCACGTTGCAGAGCCATACACCAAGCAACCAGCAACCACTGCCGACG AGAAACCCAGCTCCAAACTCCCGCCGGCCCCGTCGCCTCCCTCCTCAAGTCCCGTTCTGTCATACGATTCCGAGGAGCTG ACACCATCAAGTTCCTTCAGGGTCTGTTGACCAACGATGTACGGCGGTTCGGTGAAAAAACCACCGCCAATGAGCCCACA CCCACGGCGGTTCCTCCTTTATATGCTGCGCTGTTGACTCCTCAAGGGAGGTTCCTCTATGACCTCTTTCTATACAACCC GCCCAGAGCTACCGGCAAGGTTGATGAGCCCTTTGATTTGTATGCCGATGTCGATGCTTCTGTGTTGGATGAATGTTTCG AAACTTTCATAAAATACCGGTTGAGGTCAAAGGTTGAGATTGATAATGTCACAAACGATTTCTCATGCTGGCAGCGTTAT GGTTTTGGCTCTACTGAGAAGTCCTCAAACGTAGAAGAACCAGAGGCAACCTCTGTTGGCTGGGGTGCTGGTGTGAATGA TGCTGCAATGTCAGCTTCACGTGGGGGTAACATTGGGTGGCAATGGTTTAAGGATCCCAGATTGGACTGTCTTGGTTTCC GAGGGATCTTCCCGTCAAATATAACTCCACCTCTAATTGAAGCTGACAAAGAGACTGATGAAATGAACTATCTTTTGTGG AGGATAGAGAAGGGAGTCGCAGAAGGATCAACCGAGATTCCAAAAGGTGAGGCAGTACCGCTTGAGTATAATCTTGTAGG GCTTAATGCAATCAGCTTTGACAAAGGTTGCTATGTAGGCCAGGAATTTGTCGCTCGTACACACCACAGAGGGGTGATTA GGAAGCGCATAGTTCCTCTAAGGTTTCTTGACAACAATGAGAAAGAATTAGCAGACAAAGTCATTCCTGGCTCAGAAGTG ATAAACACGGCATCTGGTAAAAAAGTCGGTACAGTGACTACTGCCCTAGGCGGTCATGGGCTGGGGCTCTTGCGACTAGA AGAAGCGTTGAAGGGGTCTGGTGCCTTATCCATTCAAGGACAAGAGGATGTGAAGGTTGTTGCTAATAAACCAGCTTGGT GGCCTTCTGAATGGCTTCAAGATCATCAACAACACACTGCTTTTGCCTAG
Protein sequence (LotjaGi4g1v0345600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRLAFPKSFAPRCRAIHQATSNHCRRETQLQTPAGPVASLLKSRSVIRFRGADTIKFLQGLLTNDVRRFGEKTTANEPT PTAVPPLYAALLTPQGRFLYDLFLYNPPRATGKVDEPFDLYADVDASVLDECFETFIKYRLRSKVEIDNVTNDFSCWQRY GFGSTEKSSNVEEPEATSVGWGAGVNDAAMSASRGGNIGWQWFKDPRLDCLGFRGIFPSNITPPLIEADKETDEMNYLLW RIEKGVAEGSTEIPKGEAVPLEYNLVGLNAISFDKGCYVGQEFVARTHHRGVIRKRIVPLRFLDNNEKELADKVIPGSEV INTASGKKVGTVTTALGGHGLGLLRLEEALKGSGALSIQGQEDVKVVANKPAWWPSEWLQDHQQHTAFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 370 | 354 | 5.5E-61 | ||
| SUPERFAMILY | 30 | 292 | 263 | 2.67E-50 | – | |
| PANTHER | 39 | 378 | 340 | 3.1E-112 | – | |
| PANTHER | 39 | 378 | 340 | 3.1E-112 | – | |
| TIGRFAM | 236 | 301 | 66 | 2.2E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0345600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…