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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0348700 |
| Transcript ID | LotjaGi4g1v0348700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT4G03000.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298; TrEMBL-Plants: tr|I1MRB7|I1MRB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0348700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72758783..72763156) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTTATCTTTTTTAGTGAGGAAGAGAGAGAGACATTCAATTCAATGCTAGCTCTGATGTCTCAGCCTCAGCACAAAA ATAATTAATTAAATAAACAAAAACAAAACCAAACAAAAAAAGTGTGAATTCTCTTTTGGATTCTCCGATTTCGATCCTAC CTTAGATTACTCGAAAAATCTCTCCGATCGGGTACGTATCATTGTCAGTTTCGTATCCGATGATTATTGAGGATCTTATG CTCTGTTTGATGTCAAAAACACAATCTCTGAGGATTTTTTTTTTGTTTTTTTATCACTTTTTCTGAGTATTGATATGAAT TATAATTCATTTTGCTGTTTTCAATTTCCATTTTTGTCAATGGAATCTGCTCCTATGTTGTAATTACTGGATATATACGT TTCTGGGTAGTTGATTCATTCATTGCTTTTTTTTTTCTGAACCTTTTCAGGAAGTTTACTATTGTAGATTGCAGATTGCA GATTGCAATACTGAATTTCACAGGTGATTATTTTTCCAGTGCTTATATGCATGAAAATATGCAATGCCATATAATCTGGT GTTAGTATTACAAATTATATTCATTTAGATGAACAATGTTTTAAAATTTCATCTGTATTTTCCTCATCAATATCTTTTTC CATGTAGATACATCTATGTTACGCGCCATGAGTGTATGTAATGCATATTCTAATTCATGGAGCTTGATTTTTGAATAAGT AAATCATGGATGCTTGTGAATAGATGCTAGATAAATCTTGATAAGCATGTTCATAGGTTTTATGTTTTTACTCTTCTTTG ATCTTTCTTATTTTAGTTTGCAGCTAAGATAGTTGTTTATTGGCAGTGGTAGCAGTCAGATGGCTCTTTCAGTTTCTGTT CAAGAAAAACGAAGCAGGAACAAGAGAAAATTCAGGTCTGATCCATTTTTAGGGGAGCCAAATAAGATTTTTCCGGCGCC TCAACACGAGAGCCTTTGCTATGAATTCTCTGCTGGGAAGTTTGAAATAGCCCCAGGTCATAGACAAGTTGCTGCTTGTG ATCTGTGCAGTGTTAGCCTAGATCATCCTCATGGATTGAAGCTTGACCTTGGATTGTATGGTCCTGGAATTTCACCGGAG GCCTGGCCTCGTCAACCGAAGGAAGAGCTCGAGGCAAATGAATTCAATGATGCTGATTGGAGTGATCTAACAGAAGCCCA ATTGGAAGAACTTGTCCTGAGTAGTTTGGACACCATTTTCAAGAGTGCAATAAAAAGAATTGTTGCGTGTGGCTACACTG AAGAAGTTACTATTAAGGCCATCTTAAGGTCCGGCACCTGTTATGGATGTAAAGATACTGTGTCTAATATAGTTGATAAT ACTTTAGCATTTCTTAGAAGTGGCCAAAGGATCGATTCTTCACCAGAGCACTATTTTGAAGATTTGATGCAACTTGAAAA GTATATATTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTCTTCAGTACTGGGGATGCAATGTGGTGTTTGT TAATTTGCGACATGAATGTGTCACATGCTTGTGCAATGGATTATGACCCTTTAAGTAGTTTAGGAAGTGATGGCACTGCT GATGTCTCATCATCCAGCCTAGCAGCATTGCAATCAAACACGGAAACCCAATCTCTTGAATTAGGTCCTCCAAGTTCTTA TAAATCAATTCCTGCACGTTCTCATAACCCTCAATCTAGGAAACCCTTCGTGGCAGGCGTGAACAACCCAAAAAAATCTC AAATTATTGGTGGACTCTTCCAGAATGGAGGCACTGTTTGTGGATCCAATTGTGCTAATAAATCAATTAGTACTGCTGGA ACATCTCAATCTCCCCGGGTGGAAGAAAAATGTGGAACTGTTAGAAAGGTCCATTCTGGGAGCACCAAGCGGGACTACTC TCTTCGGCAGAAGTCATTTCATTTAGAAAAGAGTTATCGGACTTATGGACCTAAAGGGTCCTCAAGAGCTGGGAAGCTGA GTGGTTTAATCTTGGATAAAAAACTCAAATCTGTGTCGGAATCTTCTACCATAAACTTAAAGAGTGCATCCTTACAGATA AATAAAGCAATGGGAGTTGATGTGGCTCAAGACAATCTTAATGCTAATTTCTTATCTAATGTCGGACCATCAACCCTCAC TGCATTTAGCCAGGATTCTGCTGGTTCTAATTCTAAATCAGCCAATACTTCGTATGCAGTATATGCAGCAAATACTTTAC CTGTATTCAGTGCCTCAAGTTCATTACCAGCTACAGATACAGATCTTTCTCTTTCATTGCCTTCAAAAAACAAATCTTCT ACACAACCTTTCGGCTGCAACAATGCGGCACCTAATAGTGTTAAAATGGGGATAACATGTGACAAGTCCCTGGGGAAGCG GACACCCCAAGATGGAAAGGATGAGATGATTTTGAAGCTGGTTCCAAAGGTCCGGGAGCTGAAAAATCAGCTTCAAGAAT GGACTGAGTGGACCAATCAGAAGATAATGCAGGCTGCTCGTCGACTGAGTAAGGACAAGGCGGAGCTTCAGACACTAAGG CAAGAGAAAGAGGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTCGAGGAAAATACCATGAAGAAGCTTTCTGAGAT GGAAAGTGCCTTGTCTAAAGCTAGTGGGCAGGTTAAGAGAGCAAATGCTGCTGTCCGGAAACTTGAGGGGGAGAAGGCTG CACTGAGGAGAGAGATGGAGGCTGCTAAGCTACATGCTACGGAAACTGCCACAAGCTGTCAAGAGGTTTCAAGGAGAGAA AAGAAGACCCAAATGAAGTTTCAGTCATGGGAAAAACAGAAATCCTTGTTTCAGGGAGAGTTAATGATTGAAAAACAAAA ATTGGCCCAGCTGCTACCAGAATTAGAGCAAGCTAGAATGCAACAGGAGCAATTTGAGGTATGCTATTTCAAGTTTATTC AACTTCTTTCTCATGTCTCTTTGTATCTTGTAAACATCCACCTTATACTAAACGACTATAATATGGCTGAGTTAGTAGTT TCATGGTGTACTTTTAGATGAAGGAAATTATGATTAATGAGTAGTTATCTGAAGTTAAAAAGATGTAGATCGGCCTATAT TGATTAAATGATATAATTGTGTTGTATCAAAAACCATTTCTTAAGAAATTATTTGAATCTTTATATTTTTAACTGTTTCA CTTAGATTTTTTTTCTTCCTTTTCCTATCTTAATTTTTGAGGTTACCTCAGTTATAACAAGTGCATTCATTGGCCTCCAT TGACATTGATATCCACCTCATGATCTAGTTAGCAGAGAAACAGAAAGAGAGGTCTTATGAAAACTCCGACAACTTTTTTC ATTCCTTGTTTGTTTTGTTTTGTTTGAAGGTGTTATCCATATATAGTAGTTACAACTCTCATCCTTGAACATTTGACATG ATAAGGACAAACACATAAATATAGTTGTGAAGTAAACATGATAGAACAGGTTGGTACACAATCACATGCGCCACTCGTAA AATTCCGCAAATGCAACCATTCTTCTAAGTGCTAAATGAGATTTGTTATAGGGTCTGTTCTCATTGTAAAGGGAAATATC ACAGGCTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTCAAACAGGCCAGTTCTATAAGAAAAGAAAGAGGAC AAATTGAGGAATCTGGAAAATCCAAGGAGGGTATCATCAAATTGAAAGCAGAGAAGAATTGGCAAAAGTACAGAGATGAT ATCTGTAAACTTGAAAAAGAAATCTCCCAACTGAGACTGAAGAGTGATTCTTCAAAAATTGCAGCACTAAGGAAGGGCAT TGATGGATGCTATGCCAGCAGATGCATGGACATGAAAAATGACACTTCTTTTATTTCAGAACTAGTCATTGGCTACTCGA TGACTGGTGGTGTAAAACGAGAAAGGGAATGTGTGATGTGCCTTTCAGAGGAGATGTCTGTTGTATTCCTCCCATGTGCA CATCAGGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAACAAGGCATGCTAGATTGTCCTTCTTGTAGGAGCCCCAT CAAGCAGCGTATTGCTGTACGTTTTCCATGTACTTAATTTAATTTTTTTCTTGAGTGAGTTGAGTGTTTTGAATAATAAT GTCTATGTGACTCATGCAATGAATAATGCATTCAAATTGTGCATCTCAAAAGTTTGAGATACATTTGCTTTCAATACCAG GGTTGATTCTTCTGTGCACTTGCTGTCTTTTGAATATCTATAAAATAAAAGATAGACAAAATGTTTCACTTAATATTGTT CATGTGAGAGTATGCTTGATTTTTCAACCATTAGCCCATTCAACCATATTTTGT
CDS sequence (LotjaGi4g1v0348700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTTCAGTTTCTGTTCAAGAAAAACGAAGCAGGAACAAGAGAAAATTCAGGTCTGATCCATTTTTAGGGGAGCC AAATAAGATTTTTCCGGCGCCTCAACACGAGAGCCTTTGCTATGAATTCTCTGCTGGGAAGTTTGAAATAGCCCCAGGTC ATAGACAAGTTGCTGCTTGTGATCTGTGCAGTGTTAGCCTAGATCATCCTCATGGATTGAAGCTTGACCTTGGATTGTAT GGTCCTGGAATTTCACCGGAGGCCTGGCCTCGTCAACCGAAGGAAGAGCTCGAGGCAAATGAATTCAATGATGCTGATTG GAGTGATCTAACAGAAGCCCAATTGGAAGAACTTGTCCTGAGTAGTTTGGACACCATTTTCAAGAGTGCAATAAAAAGAA TTGTTGCGTGTGGCTACACTGAAGAAGTTACTATTAAGGCCATCTTAAGGTCCGGCACCTGTTATGGATGTAAAGATACT GTGTCTAATATAGTTGATAATACTTTAGCATTTCTTAGAAGTGGCCAAAGGATCGATTCTTCACCAGAGCACTATTTTGA AGATTTGATGCAACTTGAAAAGTATATATTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTCTTCAGTACTG GGGATGCAATGTGGTGTTTGTTAATTTGCGACATGAATGTGTCACATGCTTGTGCAATGGATTATGACCCTTTAAGTAGT TTAGGAAGTGATGGCACTGCTGATGTCTCATCATCCAGCCTAGCAGCATTGCAATCAAACACGGAAACCCAATCTCTTGA ATTAGGTCCTCCAAGTTCTTATAAATCAATTCCTGCACGTTCTCATAACCCTCAATCTAGGAAACCCTTCGTGGCAGGCG TGAACAACCCAAAAAAATCTCAAATTATTGGTGGACTCTTCCAGAATGGAGGCACTGTTTGTGGATCCAATTGTGCTAAT AAATCAATTAGTACTGCTGGAACATCTCAATCTCCCCGGGTGGAAGAAAAATGTGGAACTGTTAGAAAGGTCCATTCTGG GAGCACCAAGCGGGACTACTCTCTTCGGCAGAAGTCATTTCATTTAGAAAAGAGTTATCGGACTTATGGACCTAAAGGGT CCTCAAGAGCTGGGAAGCTGAGTGGTTTAATCTTGGATAAAAAACTCAAATCTGTGTCGGAATCTTCTACCATAAACTTA AAGAGTGCATCCTTACAGATAAATAAAGCAATGGGAGTTGATGTGGCTCAAGACAATCTTAATGCTAATTTCTTATCTAA TGTCGGACCATCAACCCTCACTGCATTTAGCCAGGATTCTGCTGGTTCTAATTCTAAATCAGCCAATACTTCGTATGCAG TATATGCAGCAAATACTTTACCTGTATTCAGTGCCTCAAGTTCATTACCAGCTACAGATACAGATCTTTCTCTTTCATTG CCTTCAAAAAACAAATCTTCTACACAACCTTTCGGCTGCAACAATGCGGCACCTAATAGTGTTAAAATGGGGATAACATG TGACAAGTCCCTGGGGAAGCGGACACCCCAAGATGGAAAGGATGAGATGATTTTGAAGCTGGTTCCAAAGGTCCGGGAGC TGAAAAATCAGCTTCAAGAATGGACTGAGTGGACCAATCAGAAGATAATGCAGGCTGCTCGTCGACTGAGTAAGGACAAG GCGGAGCTTCAGACACTAAGGCAAGAGAAAGAGGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTCGAGGAAAATAC CATGAAGAAGCTTTCTGAGATGGAAAGTGCCTTGTCTAAAGCTAGTGGGCAGGTTAAGAGAGCAAATGCTGCTGTCCGGA AACTTGAGGGGGAGAAGGCTGCACTGAGGAGAGAGATGGAGGCTGCTAAGCTACATGCTACGGAAACTGCCACAAGCTGT CAAGAGGTTTCAAGGAGAGAAAAGAAGACCCAAATGAAGTTTCAGTCATGGGAAAAACAGAAATCCTTGTTTCAGGGAGA GTTAATGATTGAAAAACAAAAATTGGCCCAGCTGCTACCAGAATTAGAGCAAGCTAGAATGCAACAGGAGCAATTTGAGG CTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTCAAACAGGCCAGTTCTATAAGAAAAGAAAGAGGACAAATT GAGGAATCTGGAAAATCCAAGGAGGGTATCATCAAATTGAAAGCAGAGAAGAATTGGCAAAAGTACAGAGATGATATCTG TAAACTTGAAAAAGAAATCTCCCAACTGAGACTGAAGAGTGATTCTTCAAAAATTGCAGCACTAAGGAAGGGCATTGATG GATGCTATGCCAGCAGATGCATGGACATGAAAAATGACACTTCTTTTATTTCAGAACTAGTCATTGGCTACTCGATGACT GGTGGTGTAAAACGAGAAAGGGAATGTGTGATGTGCCTTTCAGAGGAGATGTCTGTTGTATTCCTCCCATGTGCACATCA GGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAACAAGGCATGCTAGATTGTCCTTCTTGTAGGAGCCCCATCAAGC AGCGTATTGCTGTACGTTTTCCATGTACTTAA
Protein sequence (LotjaGi4g1v0348700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSVSVQEKRSRNKRKFRSDPFLGEPNKIFPAPQHESLCYEFSAGKFEIAPGHRQVAACDLCSVSLDHPHGLKLDLGLY GPGISPEAWPRQPKEELEANEFNDADWSDLTEAQLEELVLSSLDTIFKSAIKRIVACGYTEEVTIKAILRSGTCYGCKDT VSNIVDNTLAFLRSGQRIDSSPEHYFEDLMQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDYDPLSS LGSDGTADVSSSSLAALQSNTETQSLELGPPSSYKSIPARSHNPQSRKPFVAGVNNPKKSQIIGGLFQNGGTVCGSNCAN KSISTAGTSQSPRVEEKCGTVRKVHSGSTKRDYSLRQKSFHLEKSYRTYGPKGSSRAGKLSGLILDKKLKSVSESSTINL KSASLQINKAMGVDVAQDNLNANFLSNVGPSTLTAFSQDSAGSNSKSANTSYAVYAANTLPVFSASSSLPATDTDLSLSL PSKNKSSTQPFGCNNAAPNSVKMGITCDKSLGKRTPQDGKDEMILKLVPKVRELKNQLQEWTEWTNQKIMQAARRLSKDK AELQTLRQEKEEVERLKKEKQSLEENTMKKLSEMESALSKASGQVKRANAAVRKLEGEKAALRREMEAAKLHATETATSC QEVSRREKKTQMKFQSWEKQKSLFQGELMIEKQKLAQLLPELEQARMQQEQFEARWQQEAKAKEELLKQASSIRKERGQI EESGKSKEGIIKLKAEKNWQKYRDDICKLEKEISQLRLKSDSSKIAALRKGIDGCYASRCMDMKNDTSFISELVIGYSMT GGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMLDCPSCRSPIKQRIAVRFPCT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 860 | 857 | 0.0 | – | |
| PANTHER | 4 | 860 | 857 | 0.0 | – | |
| MobiDBLite | 260 | 294 | 35 | - | – | |
| MobiDBLite | 260 | 283 | 24 | - | – | |
| Coils | 549 | 632 | 84 | - | – | |
| Coils | 703 | 723 | 21 | - | – | |
| Gene3D | 798 | 859 | 62 | 3.4E-12 | ||
| SUPERFAMILY | 804 | 856 | 53 | 5.3E-7 | – | |
| Pfam | 806 | 854 | 49 | 7.8E-11 | – | |
| ProSiteProfiles | 809 | 849 | 41 | 9.804 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0348700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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